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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048941 ID=TCONS_00048941|Name=TCONS_00048941|organism=Clytia hemisphaerica|type=transcript|length=1439bp
gccattatggatttaaaggaaatttttgaaaactcaaaattgatttttcc
taGAGCCCTCCCTGGAGtattcattgctgaaaatttcaagtgtgtaacTT
GAAGAGTTTAAATGTTTTGGGTGCTTCTCGATTTAAATACTGGTCTATTG
TCATGCCTAGACATTTTGTATTGGGGACGACTTTAACATTTAGTTTTACA
GCCTGGAAGGGACCAATAAAAGGCTTCTTTGAAATCATGCGAATTTTGCA
TTTACCTGGGTGTGTCGTAAGAGAATTTCTCTTTGAACACACTTCAACTT
TTTTGGCAGCAACACCCATTTTTGCCACTGTTAAACAACAGTGGCGCCTA
CCTCTAAAAAACAGTTGAGTCCTCTGCAAAAATATCAAGCTCTCCATCAT
TAGGATTGACTTCACTTAGCATATCATTGATGTACGATGAAAAGCAATTA
GGACCTAGAAGACAACCCTCTAGTACATCTTATCAAACATTTGCTCTATC
TGATGAAATACCGTTGATTATCCTATACTGAGAGCGATAATCTAAATTGG
ATATTATGTACTCAAGAAATGATCCAGATATTCCACACCCAGCCAGTTTA
TTAAGCAAAATAGGATGAGCTACACTAtcgaatgctttttgaaagtcaat
aaataaaacaacaacaaNAGGATGAGCTACACTAtcgaatgctttttgaa
agttaataaataaaacaacaacaaccttTCCTGAATCAATAGATTTCAGC
CATTTCTCTGTCATATAAAGAAGAAGATCTTCACAAGAGCTCTGTTTGAA
AAAGTTCCATTGAGATTGAACGGTTCCAAATAACCAACTTGAGCATTACA
AATGAATTTCTCAACGACTTTGTTTGGTATAGATAACAGTGAGATAGGAC
GATAATTACCACAATCTTTCTATGatccttttttttatatataaaggATA
CCCTTGCAGTTTTTCAAGTTTAGGGAAAGGGACCATGCTCAACACCTTTa
caaaaaaacttggaaaaggcTTGAAACTGACGTTGATTCATGTAATTTAA
AATCCTTTGAAGAAATATTATCAGGGCCacaagatttttcatttttaaca
gcTTAGGAAAAACATTCATCACACCATGCATCCTCATTTCTAATTTTGTA
GATTAGGGTTCATTCCTTTTCAAACACAACATTGATACACAGAATTTGGA
ATTAGGTCTCAATAACTGCTGGGTCCAAGATCGTGGTGTTAGAGACTCCG
GGCGTTTgaaaagattattttcaagtatttttttcagataCTTATAAATT
GACTTAACTTTGGTTTGCTTTCTATAAGCCGATACGATAAGTCCTTCAAT
AGGTTCGCTAAATAAGCAGAATTTTGAttatttgtcaaaaaataaattta
tgtaCTTATTGTATATTGTATGAAAAGCGAATAGTGATG Run BLAST on NCBI transcript from alignment at scaffold_148:130505..131943 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048941 ID=TCONS_00048941|Name=TCONS_00048941|organism=Clytia hemisphaerica|type=transcript|length=1439bp|location=Sequence derived from alignment at scaffold_148:130505..131943 (Clytia hemisphaerica)
CATCACTATTCGCTTTTCATACAATATACAATAAGtacataaatttattt
tttgacaaataaTCAAAATTCTGCTTATTTAGCGAACCTATTGAAGGACT
TATCGTATCGGCTTATAGAAAGCAAACCAAAGTTAAGTCAATTTATAAGt
atctgaaaaaaatacttgaaaataatcttttcAAACGCCCGGAGTCTCTA
ACACCACGATCTTGGACCCAGCAGTTATTGAGACCTAATTCCAAATTCTG
TGTATCAATGTTGTGTTTGAAAAGGAATGAACCCTAATCTACAAAATTAG
AAATGAGGATGCATGGTGTGATGAATGTTTTTCCTAAgctgttaaaaatg
aaaaatcttgtGGCCCTGATAATATTTCTTCAAAGGATTTTAAATTACAT
GAATCAACGTCAGTTTCAAgccttttccaagtttttttgtAAAGGTGTTG
AGCATGGTCCCTTTCCCTAAACTTGAAAAACTGCAAGGGTATcctttata
tataaaaaaaaggatCATAGAAAGATTGTGGTAATTATCGTCCTATCTCA
CTGTTATCTATACCAAACAAAGTCGTTGAGAAATTCATTTGTAATGCTCA
AGTTGGTTATTTGGAACCGTTCAATCTCAATGGAACTTTTTCAAACAGAG
CTCTTGTGAAGATCTTCTTCTTTATATGACAGAGAAATGGCTGAAATCTA
TTGATTCAGGAaaggttgttgttgttttatttattaactttcaaaaagca
ttcgaTAGTGTAGCTCATCCTNttgttgttgttttatttattgactttca
aaaagcattcgaTAGTGTAGCTCATCCTATTTTGCTTAATAAACTGGCTG
GGTGTGGAATATCTGGATCATTTCTTGAGTACATAATATCCAATTTAGAT
TATCGCTCTCAGTATAGGATAATCAACGGTATTTCATCAGATAGAGCAAA
TGTTTGATAAGATGTACTAGAGGGTTGTCTTCTAGGTCCTAATTGCTTTT
CATCGTACATCAATGATATGCTAAGTGAAGTCAATCCTAATGATGGAGAG
CTTGATATTTTTGCAGAGGACTCAACTGTTTTTTAGAGGTAGGCGCCACT
GTTGTTTAACAGTGGCAAAAATGGGTGTTGCTGCCAAAAAAGTTGAAGTG
TGTTCAAAGAGAAATTCTCTTACGACACACCCAGGTAAATGCAAAATTCG
CATGATTTCAAAGAAGCCTTTTATTGGTCCCTTCCAGGCTGTAAAACTAA
ATGTTAAAGTCGTCCCCAATACAAAATGTCTAGGCATGACAATAGACCAG
TATTTAAATCGAGAAGCACCCAAAACATTTAAACTCTTCAAgttacacac
ttgaaattttcagcaatgaataCTCCAGGGAGGGCTCtaggaaaaatcaa
ttttgagttttcaaaaatttcctttaaatccataatggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048941-exon-scaffold_148-1491911889:130505..131943 | TCONS_00048941-exon-scaffold_148-1491911889:130505..131943 | Clytia hemisphaerica | exon |
| TCONS_00048941-exon-scaffold_148-1510915933:130505..131943 | TCONS_00048941-exon-scaffold_148-1510915933:130505..131943 | Clytia hemisphaerica | exon |
| TCONS_00048941-exon-scaffold_148-1575043694:130505..131943 | TCONS_00048941-exon-scaffold_148-1575043694:130505..131943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:130505..131943 . |
Blast
The following BLAST results are available for this feature:
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