TCONS_00048943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048943
Unique NameTCONS_00048943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048943 ID=TCONS_00048943|Name=TCONS_00048943|organism=Clytia hemisphaerica|type=transcript|length=389bp
ATTAGATCAACTTACGGTAATTGCTTATCAGTCTTTTGGGAGAACGCGAG
ggtctattgaataactaattactctgGCAGAAACTTATATTtataattga
tttgtctcttACAACACAACTGTTAGCTAggtacaagataatttatcccg
TTTGTATTGTACTGGCTGGATTGATTTGATATTCAATATTCAATGGACTG
TCATGCCAAACAACTATTTGTTCAATAGACTTGGATCAGGCGTTCCATAT
TCAATGTCAGGACTAATAGACGACATCGGcttaacatgaaaactcagatt
tgttCTCCAAAAATTGCCCACAATACTTTGCGcagaaaaaagttcacggt
gaaataTTTTACGCGCAAAgtattgtggggaattctcgg
Run BLAST on NCBI

transcript from alignment at scaffold_148:135456..135844

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048943 ID=TCONS_00048943|Name=TCONS_00048943|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_148:135456..135844 (Clytia hemisphaerica)
ccgagaattccccacaatacTTTGCGCGTAAAAtatttcaccgtgaactt
ttttctgCGCAAAGTATTGTGGGCAATTTTTGGAGaacaaatctgagttt
tcatgttaagCCGATGTCGTCTATTAGTCCTGACATTGAATATGGAACGC
CTGATCCAAGTCTATTGAACAAATAGTTGTTTGGCATGACAGTCCATTGA
ATATTGAATATCAAATCAATCCAGCCAGTACAATACAAAcgggataaatt
atcttgtaccTAGCTAACAGTTGTGTTGTaagagacaaatcaattataAA
TATAAGTTTCTGCcagagtaattagttattcaatagaccCTCGCGTTCTC
CCAAAAGACTGATAAGCAATTACCGTAAGTTGATCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031091XLOC_031091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048943-exon-scaffold_148-1491911889:135456..135844TCONS_00048943-exon-scaffold_148-1491911889:135456..135844Clytia hemisphaericaexon
TCONS_00048943-exon-scaffold_148-1510915933:135456..135844TCONS_00048943-exon-scaffold_148-1510915933:135456..135844Clytia hemisphaericaexon
TCONS_00048943-exon-scaffold_148-1575043694:135456..135844TCONS_00048943-exon-scaffold_148-1575043694:135456..135844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:135456..135844 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197099	0	0	0.436664	0	0.210037	0	0.237231	0	0	0.599062	0.131267	0	0	0.111919	0.120106	0.443883	0.151655	0.20952	0	0.190566	0.278854	0	0.616371	1.05808	0	0.540523	0.57686	0.437528	0.891544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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