TCONS_00048944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048944
Unique NameTCONS_00048944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048944 ID=TCONS_00048944|Name=TCONS_00048944|organism=Clytia hemisphaerica|type=transcript|length=744bp
aactcaaatcaaatgactttggaggttcggtgaaatggtggctgaattgc
cgtcccatgttttgtcagatagtctcaagttagagcagttgacggtaaag
aaaaatagtttccatcagcgattccaacattctgattattcctatcttta
aagaagggtgtcgaaattagaaggggGATGTCAATATTAGTATACTGTAA
TCAGTCTGCACAGACCTATAGATCCAGGGGTTGTCAACCGATCCTTGTCG
aaccaatttttttaatcgaaccaTCAAACTCAATTGAACTTAATCAAACG
ATAGGTGTTATTGAGCTTTACCACAGAAAAATCTTGATTACTGTAGTTTC
AGTGTAGGTAGAACTCTGATattccttggttagaaaaagttatactgttt
tcttttctctttacagAATATACAAGCCTTTAACATCAAcaaattccaca
catttcctTGCCAGAAacttatctgccattatgactttcttgaagcggTT
CCAAAGTTAACCAATCAGTAGGTTATGTATCAGAATTCTTAttggagttc
ttttccgagatttgtagaATAGCTAAGTCgacaaaaaacttaaaataaca
GAACTGCCATCATTTGTGTCATCACAAGCAACTTTAAATGCAAATAAAAT
GGAACGTTCTAGTAAAACGAACGATATGGAACGTTCTTCAACGTTTAGGA
ACGTTCTTAGAACGCTAGAGGACGTTCTTGAACGTTCCTGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_148:141908..142651

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048944 ID=TCONS_00048944|Name=TCONS_00048944|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at scaffold_148:141908..142651 (Clytia hemisphaerica)
GTTTCAGGAACGTTCAAGAACGTCCTCTAGCGTTCTAAGAACGTTCCTAA
ACGTTGAAGAACGTTCCATATCGTTCGTTTTACTAGAACGTTCCATTTTA
TTTGCATTTAAAGTTGCTTGTGATGACACAAATGATGGCAGTTCtgttat
tttaagttttttgtcGACTTAGCTATtctacaaatctcggaaaagaactc
caaTAAGAATTCTGATACATAACCTACTGATTGGTTAACTTTGGAAccgc
ttcaagaaagtcataatggcagataagtTTCTGGCAaggaaatgtgtgga
atttgTTGATGTTAAAGGCTTGTATATTctgtaaagagaaaagaaaacag
tataactttttctaaccaaggaatATCAGAGTTCTACCTACACTGAAACT
ACAGTAATCAAGATTTTTCTGTGGTAAAGCTCAATAACACCTATCGTTTG
ATTAAGTTCAATTGAGTTTGAtggttcgattaaaaaaattggttCGACAA
GGATCGGTTGACAACCCCTGGATCTATAGGTCTGTGCAGACTGATTACAG
TATACTAATATTGACATCccccttctaatttcgacacccttctttaaaga
taggaataatcagaatgttggaatcgctgatggaaactatttttctttac
cgtcaactgctctaacttgagactatctgacaaaacatgggacggcaatt
cagccaccatttcaccgaacctccaaagtcatttgatttgagtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031092XLOC_031092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048944-exon-scaffold_148-1491911889:141908..142651TCONS_00048944-exon-scaffold_148-1491911889:141908..142651Clytia hemisphaericaexon
TCONS_00048944-exon-scaffold_148-1510915933:141908..142651TCONS_00048944-exon-scaffold_148-1510915933:141908..142651Clytia hemisphaericaexon
TCONS_00048944-exon-scaffold_148-1575043694:141908..142651TCONS_00048944-exon-scaffold_148-1575043694:141908..142651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:141908..142651 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.345332	0.203089	0.804666	0.604477	0.220549	0.649245	0.178283	0.410459	0.22562	0.282952	0	0.362273	0.185803	0.671859	0.364262	0.267348	0.155695	0.160705	0.144345	0.235831	0.593256	0.286891	0.0774071	0	0.379409	0.521826	0.324116	0.330976	0.240705	0.785013
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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