|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048945 ID=TCONS_00048945|Name=TCONS_00048945|organism=Clytia hemisphaerica|type=transcript|length=1603bp
TAGCTTTCGCAAATTTATTTGTGAGAGCTTAGCTGTACAGGGTCCAAAAC
TCTTCAACAGTATTCCCTCTGACATACGAAATATCACTGGCTGTTCAAAA
GACCCATTCAAGAAACGACTCCATAAATATCTGTGCTCTATACCCGACGA
ACCTCACACTACGTCGCGACAAACAAGATTGGCTGAATCAAATGCtcttt
tcgatcaaattataCGTGTTGGGCTCAACGAGCTGGACAGATAaatatca
tcaaatcaaactgAAGTATACTGAAGTATGAAGTATGCTATCTCGTCATC
TTCTTTGCTCTTGTTCTTGTGCTTCATTAAATTGTCATATGAATCAGGAT
AATCCCTGACCCAATGAAACACTGATCCACAAACCATACAAGTTGAAGGG
GCACCGTCTGGTCCAGCTGGGTTTCGTCTTGGTTTTCCATCTTGTTGTCT
TCTTTCCGCACCACCATGCTGTCCACGACCTCCTATACCTCTAAAATTGA
ATCGTCCACGATTAGGTCGAGATCTTCCACCACGATTTGATCTATCACGG
TATGGTGTCTCAAATGTCATCTCATTTCGCGACTCAAACTTCACCGGATT
GTTTACAGCACCTACATCTTTGCTCTTGTTTGAAGATACTGAGAGGCTCA
AATCTCCAAAAACCTTGCATAGTTGGTCTTTCATTGAATTGTAAGATAGC
TCAGTCATTGTTGCTCTAATTAACTTTTCGTGTGAATCCGAGATGTTTGC
ATTATTGAGGAACTTGTACACTAAGATACCATCAGGGAGAATCATTTCGT
AAGCTTTGGCTTTGTTGTACAGACGTTCAAACTCGACAACAAAATCTGCA
ATTGGCATATCATTGGGTCGTTTAAACTTCCAAAAACTGTCATATGCTTG
AAACAAGAGTTGCAGCTTATCTTTGAGATACAGTTTATCTAGTTGTGCAA
GCACCTTGCTCACACCATCTGAATCTTTACTTACTTTTGCTACTACTACC
TTTAACTCCAGCGCAGCTTCCCTTGCTTTGCCTTCAAAGGATAATAAAAT
TGCCAAGCCTTGCTTCTTCTTCTCCAACGAAGTGAAGAGCTGCCAAATGG
TTATTTCCTTCTTCCAGTTTTCGTAAGGAACATCCTCCTTCAATGCCGAC
GGGGCTTTGATATCATTCTTGTTTGCCATAGTGGATCGTTGTTTCCTCTG
CTACCAAATGTTAAATAAGTATTTACCAACCTAGTGATTGCTGATCCTTG
CTTGACCGGATGCAATATAAACCAATATAATAAGTCTTCACCAACAAAAG
ACTTGATGAACACAATCCAACTTGAACCAACACAAGAATCAATATGAACG
ATGATCAATatcaattgatccaaataccaTTTACAGAATTCACATAAAGC
CTCACTGGCTATCATATATTATTCTTTACCACTTCTTTGTATTATTCATT
TATAAGGTAGAGATTAACAAACTGCTCtacgattggttgaaacatgggac
tgttgatatctggcctgtattttcacttactgttaaatctctttgacaat
aaatttgttttgataacttcaccaagtttatcaatcatactttctgtcat
aac Run BLAST on NCBI protein sequence of TCONS_00048945-protein >TCONS_00048945-protein ID=TCONS_00048945-protein|Name=TCONS_00048945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MANKNDIKAPSALKEDVPYENWKKEITIWQLFTSLEKKKQGLAILLSFEG
KAREAALELKVVVAKVSKDSDGVSKVLAQLDKLYLKDKLQLLFQAYDSFW
KFKRPNDMPIADFVVEFERLYNKAKAYEMILPDGILVYKFLNNANISDSH
EKLIRATMTELSYNSMKDQLCKVFGDLSLSVSSNKSKDVGAVNNPVKFES
RNEMTFETPYRDRSNRGGRSRPNRGRFNFRGIGGRGQHGGAERRQQDGKP
RRNPAGPDGAPSTCMVCGSVFHWVRDYPDSYDNLMKHKNKSKEDDEIAYF
ILQYTSV Run BLAST on NCBI transcript from alignment at scaffold_148:142909..144511 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048945 ID=TCONS_00048945|Name=TCONS_00048945|organism=Clytia hemisphaerica|type=transcript|length=1603bp|location=Sequence derived from alignment at scaffold_148:142909..144511 (Clytia hemisphaerica)
gttatgacagaaagtatgattgataaacttggtgaagttatcaaaacaaa
tttattgtcaaagagatttaacagtaagtgaaaatacaggccagatatca
acagtcccatgtttcaaccaatcgtaGAGCAGTTTGTTAATCTCTACCTT
ATAAATGAATAATACAAAGAAGTGGTAAAGAATAATATATGATAGCCAGT
GAGGCTTTATGTGAATTCTGTAAAtggtatttggatcaattgatATTGAT
CATCGTTCATATTGATTCTTGTGTTGGTTCAAGTTGGATTGTGTTCATCA
AGTCTTTTGTTGGTGAAGACTTATTATATTGGTTTATATTGCATCCGGTC
AAGCAAGGATCAGCAATCACTAGGTTGGTAAATACTTATTTAACATTTGG
TAGCAGAGGAAACAACGATCCACTATGGCAAACAAGAATGATATCAAAGC
CCCGTCGGCATTGAAGGAGGATGTTCCTTACGAAAACTGGAAGAAGGAAA
TAACCATTTGGCAGCTCTTCACTTCGTTGGAGAAGAAGAAGCAAGGCTTG
GCAATTTTATTATCCTTTGAAGGCAAAGCAAGGGAAGCTGCGCTGGAGTT
AAAGGTAGTAGTAGCAAAAGTAAGTAAAGATTCAGATGGTGTGAGCAAGG
TGCTTGCACAACTAGATAAACTGTATCTCAAAGATAAGCTGCAACTCTTG
TTTCAAGCATATGACAGTTTTTGGAAGTTTAAACGACCCAATGATATGCC
AATTGCAGATTTTGTTGTCGAGTTTGAACGTCTGTACAACAAAGCCAAAG
CTTACGAAATGATTCTCCCTGATGGTATCTTAGTGTACAAGTTCCTCAAT
AATGCAAACATCTCGGATTCACACGAAAAGTTAATTAGAGCAACAATGAC
TGAGCTATCTTACAATTCAATGAAAGACCAACTATGCAAGGTTTTTGGAG
ATTTGAGCCTCTCAGTATCTTCAAACAAGAGCAAAGATGTAGGTGCTGTA
AACAATCCGGTGAAGTTTGAGTCGCGAAATGAGATGACATTTGAGACACC
ATACCGTGATAGATCAAATCGTGGTGGAAGATCTCGACCTAATCGTGGAC
GATTCAATTTTAGAGGTATAGGAGGTCGTGGACAGCATGGTGGTGCGGAA
AGAAGACAACAAGATGGAAAACCAAGACGAAACCCAGCTGGACCAGACGG
TGCCCCTTCAACTTGTATGGTTTGTGGATCAGTGTTTCATTGGGTCAGGG
ATTATCCTGATTCATATGACAATTTAATGAAGCACAAGAACAAGAGCAAA
GAAGATGACGAGATAGCATACTTCATACTTCAGTATACTTcagtttgatt
tgatgatattTATCTGTCCAGCTCGTTGAGCCCAACACGtataatttgat
cgaaaagaGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTGTGA
GGTTCGTCGGGTATAGAGCACAGATATTTATGGAGTCGTTTCTTGAATGG
GTCTTTTGAACAGCCAGTGATATTTCGTATGTCAGAGGGAATACTGTTGA
AGAGTTTTGGACCCTGTACAGCTAAGCTCTCACAAATAAATTTGCGAAAG
CTA Coding sequence (CDS) from alignment at scaffold_148:142909..144511 >TCONS_00048945 ID=TCONS_00048945|Name=TCONS_00048945|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_148:142909..144511 (Clytia hemisphaerica)
ATGGCAAACAAGAATGATATCAAAGCCCCGTCGGCATTGAAGGAGGATGT
TCCTTACGAAAACTGGAAGAAGGAAATAACCATTTGGCAGCTCTTCACTT
CGTTGGAGAAGAAGAAGCAAGGCTTGGCAATTTTATTATCCTTTGAAGGC
AAAGCAAGGGAAGCTGCGCTGGAGTTAAAGGTAGTAGTAGCAAAAGTAAG
TAAAGATTCAGATGGTGTGAGCAAGGTGCTTGCACAACTAGATAAACTGT
ATCTCAAAGATAAGCTGCAACTCTTGTTTCAAGCATATGACAGTTTTTGG
AAGTTTAAACGACCCAATGATATGCCAATTGCAGATTTTGTTGTCGAGTT
TGAACGTCTGTACAACAAAGCCAAAGCTTACGAAATGATTCTCCCTGATG
GTATCTTAGTGTACAAGTTCCTCAATAATGCAAACATCTCGGATTCACAC
GAAAAGTTAATTAGAGCAACAATGACTGAGCTATCTTACAATTCAATGAA
AGACCAACTATGCAAGGTTTTTGGAGATTTGAGCCTCTCAGTATCTTCAA
ACAAGAGCAAAGATGTAGGTGCTGTAAACAATCCGGTGAAGTTTGAGTCG
CGAAATGAGATGACATTTGAGACACCATACCGTGATAGATCAAATCGTGG
TGGAAGATCTCGACCTAATCGTGGACGATTCAATTTTAGAGGTATAGGAG
GTCGTGGACAGCATGGTGGTGCGGAAAGAAGACAACAAGATGGAAAACCA
AGACGAAACCCAGCTGGACCAGACGGTGCCCCTTCAACTTGTATGGTTTG
TGGATCAGTGTTTCATTGGGTCAGGGATTATCCTGATTCATATGACAATT
TAATGAAGCACAAGAACAAGAGCAAAGAAGATGACGAGATAGCATACTTC
ATACTTCAGTATACTTcagtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048945-exon-scaffold_148-1491911889:142909..144511 | TCONS_00048945-exon-scaffold_148-1491911889:142909..144511 | Clytia hemisphaerica | exon |
| TCONS_00048945-exon-scaffold_148-1510915933:142909..144511 | TCONS_00048945-exon-scaffold_148-1510915933:142909..144511 | Clytia hemisphaerica | exon |
| TCONS_00048945-exon-scaffold_148-1575043694:142909..144511 | TCONS_00048945-exon-scaffold_148-1575043694:142909..144511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:142909..144511 . |
Blast
The following BLAST results are available for this feature:
|
