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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048948 ID=TCONS_00048948|Name=TCONS_00048948|organism=Clytia hemisphaerica|type=transcript|length=1139bp
Ntttggtatcttcgttgcgtcacagtgaaaggtttgtttttattttagtt
tgtatctttgaaagaccccatcggctttaggctgggctgtcggctttagg
agcTCTCACGGTATTCATTTCAGCCTTTTTCATGGCATCTTTGGTTTGCT
CAAAAGTAAGGGTAGGTCTTCATCGATGACATCAGTTTCGATAAATACAT
TCTTTCCTCCAATGTATGCTGGTACCTTTACTTTCTTCAAGGATTTCACA
CTATCTCCATTGCCAAACTTGAAGCTTGTGCTGCTTTTGAATTCCTTCAC
TgttgataatttttttccagTGTCTCTAGATAGCATCCAAGCCATGTTTT
TCCACATACATTCTTTGTACATCCAGAGTCCAACACTGCTGTGCCAAGGG
TTTCTCCCACAAACTGCTTTAAAGTGTCACTAAATAAGGCTATGAGTACT
ACAACTACAGAAAAGAAAGCTTGTGAGGCGATCAAACtaaatccaaaata
tttcttttcttatgCTAAAAGACATAGTAAGACCAAAGCTAGAATTGGTC
CTTTAATAGATAAAACAACAAACAATTATGTGTCTGACAGTAAAAAAATG
GCAGACATTCTTCAAAAACAGTACCAATCAGTCTTCAGTAAACCACTCGA
AAACGCAAAATATAATGATAAAGACAGTGATTTTGTTTTGACTGATATTT
TGTTTTGACTGATATTGATTTTACGAAAGTGGACTTTGTTGAGGAGATTG
GAACAATATCCAAAAATGCAGCACCAGGACCTGATTNNTCGGCCAGTGTC
ACTAACCTCGCACATAATGAAAACCTTTGAAAAGATTGTGcgaaaaaaca
ttgttaattATCTAGAAGAgaataacatttttaatgactccCAACGTGGC
TTTCAACAAGGTAGATCTTGTTTGAGTCAACTCCTTGAACATTATGATAC
AATACTATCATACCTTGAGAGAGGTATTAATGTCGACACAATTTATTTGG
ACTTGAGTAAGGCATTTGACAAAGTTGATCATGCAATTTTGTTACACAAA
TTGTCTCAGCTCGGGATCAAAGGAAAGCTATTGCGATGGATTGAATCGTT
TTTGAAAGGCAGAAAACAATCTGTTGTTGTAAATGGCTT Run BLAST on NCBI protein sequence of TCONS_00048948-protein >TCONS_00048948-protein ID=TCONS_00048948-protein|Name=TCONS_00048948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MQHQDLIXRPVSLTSHIMKTFEKIVRKNIVNYLEENNIFNDSQRGFQQGR
SCLSQLLEHYDTILSYLERGINVDTIYLDLSKAFDKVDHAILLHKLSQLG
IKGKLLRWIESFLKGRKQSVVVNG Run BLAST on NCBI transcript from alignment at scaffold_148:148264..149402 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048948 ID=TCONS_00048948|Name=TCONS_00048948|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at scaffold_148:148264..149402 (Clytia hemisphaerica)
AAGCCATTTACAACAACAGATTGTTTTCTGCCTTTCAAAAACGATTCAAT
CCATCGCAATAGCTTTCCTTTGATCCCGAGCTGAGACAATTTGTGTAACA
AAATTGCATGATCAACTTTGTCAAATGCCTTACTCAAGTCCAAATAAATT
GTGTCGACATTAATACCTCTCTCAAGGTATGATAGTATTGTATCATAATG
TTCAAGGAGTTGACTCAAACAAGATCTACCTTGTTGAAAGCCACGTTGgg
agtcattaaaaatgttattcTCTTCTAGATaattaacaatgttttttcgC
ACAATCTTTTCAAAGGTTTTCATTATGTGCGAGGTTAGTGACACTGGCCG
ANNAATCAGGTCCTGGTGCTGCATTTTTGGATATTGTTCCAATCTCCTCA
ACAAAGTCCACTTTCGTAAAATCAATATCAGTCAAAACAAAATATCAGTC
AAAACAAAATCACTGTCTTTATCATTATATTTTGCGTTTTCGAGTGGTTT
ACTGAAGACTGATTGGTACTGTTTTTGAAGAATGTCTGCCATTTTTTTAC
TGTCAGACACATAATTGTTTGTTGTTTTATCTATTAAAGGACCAATTCTA
GCTTTGGTCTTACTATGTCTTTTAGcataagaaaagaaatattttggatt
taGTTTGATCGCCTCACAAGCTTTCTTTTCTGTAGTTGTAGTACTCATAG
CCTTATTTAGTGACACTTTAAAGCAGTTTGTGGGAGAAACCCTTGGCACA
GCAGTGTTGGACTCTGGATGTACAAAGAATGTATGTGGAAAAACATGGCT
TGGATGCTATCTAGAGACActggaaaaaaattatcaacAGTGAAGGAATT
CAAAAGCAGCACAAGCTTCAAGTTTGGCAATGGAGATAGTGTGAAATCCT
TGAAGAAAGTAAAGGTACCAGCATACATTGGAGGAAAGAATGTATTTATC
GAAACTGATGTCATCGATGAAGACCTACCCTTACTTTTGAGCAAACCAAA
GATGCCATGAAAAAGGCTGAAATGAATACCGTGAGAgctcctaaagccga
cagcccagcctaaagccgatggggtctttcaaagatacaaactaaaataa
aaacaaacctttcactgtgacgcaacgaagataccaaaN Coding sequence (CDS) from alignment at scaffold_148:148264..149402 >TCONS_00048948 ID=TCONS_00048948|Name=TCONS_00048948|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_148:148264..149402 (Clytia hemisphaerica)
GCCATTTACAACAACAGATTGTTTTCTGCCTTTCAAAAACGATTCAATCC
ATCGCAATAGCTTTCCTTTGATCCCGAGCTGAGACAATTTGTGTAACAAA
ATTGCATGATCAACTTTGTCAAATGCCTTACTCAAGTCCAAATAAATTGT
GTCGACATTAATACCTCTCTCAAGGTATGATAGTATTGTATCATAATGTT
CAAGGAGTTGACTCAAACAAGATCTACCTTGTTGAAAGCCACGTTGggag
tcattaaaaatgttattcTCTTCTAGATaattaacaatgttttttcgCAC
AATCTTTTCAAAGGTTTTCATTATGTGCGAGGTTAGTGACACTGGCCGAN
NAATCAGGTCCTGGTGCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048948-exon-scaffold_148-1491911889:148264..149402 | TCONS_00048948-exon-scaffold_148-1491911889:148264..149402 | Clytia hemisphaerica | exon |
| TCONS_00048948-exon-scaffold_148-1510915933:148264..149402 | TCONS_00048948-exon-scaffold_148-1510915933:148264..149402 | Clytia hemisphaerica | exon |
| TCONS_00048948-exon-scaffold_148-1575043694:148264..149402 | TCONS_00048948-exon-scaffold_148-1575043694:148264..149402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:148264..149402 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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