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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048968 ID=TCONS_00048968|Name=TCONS_00048968|organism=Clytia hemisphaerica|type=transcript|length=1953bpRun BLAST on NCBI protein sequence of TCONS_00048968-protein >TCONS_00048968-protein ID=TCONS_00048968-protein|Name=TCONS_00048968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp MTHGTLWIPLCTLCVLLLVTGVHSDDELIMSNLLYRHGARSPQFIYPTDPRun BLAST on NCBI transcript from alignment at scaffold_15:32098..56536+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048968 ID=TCONS_00048968|Name=TCONS_00048968|organism=Clytia hemisphaerica|type=transcript|length=24439bp|location=Sequence derived from alignment at scaffold_15:32098..56536+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_15:32098..56536+ >TCONS_00048968 ID=TCONS_00048968|Name=TCONS_00048968|organism=Clytia hemisphaerica|type=CDS|length=15732bp|location=Sequence derived from alignment at scaffold_15:32098..56536+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048968 vs. Swiss-Prot (Human)
Match: PPAL (Lysosomal acid phosphatase OS=Homo sapiens GN=ACP2 PE=1 SV=3) HSP 1 Score: 171.4 bits (433), Expect = 1.498e-46 Identity = 114/357 (31.93%), Postives = 180/357 (50.42%), Query Frame = 3
Query: 141 LIMSNLLYRHGARSPQFIYPTDPHKDY-WKDGVGRLTQKGMKMEYDLGKFLKARYVDTKFVSQHYLHTQVTIRSSGVDRCLQSAEAQLAALYPPSDWQIWGDDELGKLWQPIPIQTVPGDEDPVLRPENTKNCPGYDDLMEEMQKDEAYQERINSDETKDLLKYMSLHSGW-NLTVDNMWIIYDAVKSEVAEELKQPQWIVDR-LDEISSLSWYLFRFKYQPQKDTADXXXXXXXXXXXXIMNDNMKLWTSGTEDEKKDLHKLNIFSAHDSTLLCLSAALQTDIVDEIPFSASILVELFNS-SGSYYVKMTYKHKDTLTPWKLS--DCDEKCPLDGFISKVKDRVPTHRVEDCHWDS 1193
L LLYRHG RSP YP DP+++ W G G+LT++GM ++LG+ L+ RY F++ Y +V +RS+ DR L SAEA LA L+PP+ Q + + WQPIP+ TVP ED +L+ CP Y+ L E ++ YQ S L ++ +G +LT++ +W +YD + E L+ P W + + +S L + FRF + + + N + TS L KL ++SAHD+TL+ L AL ++ P+++ + EL+ SG++ V+M ++++ PW LS C +CPL F+ + VP ++C S
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDPYQEEEWPQGFGQLTKEGMLQHWELGQALRQRY--HGFLNTSYHRQEVYVRSTDFDRTLMSAEANLAGLFPPNGMQRFNPN---ISWQPIPVHTVPITEDRLLK-FPLGPCPRYEQLQNETRQTPEYQN--ESSRNAQFLDMVANETGLTDLTLETVWNVYDTLFCEQTHGLRLPPWASPQTMQRLSRLKDFSFRFLFGIYQQAEKARLQGGVLLAQIRKNLTLMATTS-------QLPKLLVYSAHDTTLVALQMALDVYNGEQAPYASCHIFELYQEDSGNFSVEMYFRNESDKAPWPLSLPGCPHRCPLQDFLRLTEPVVPKDWQQECQLAS 374 The following BLAST results are available for this feature:
BLAST of TCONS_00048968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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