|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048981 ID=TCONS_00048981|Name=TCONS_00048981|organism=Clytia hemisphaerica|type=transcript|length=3610bpRun BLAST on NCBI protein sequence of TCONS_00048981-protein >TCONS_00048981-protein ID=TCONS_00048981-protein|Name=TCONS_00048981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1016bp MMLRVLQSGTKRIPKFKMTSNSNKFHQQHAKKAVIFDMGGVIIPTPVPLVRun BLAST on NCBI transcript from alignment at scaffold_15:251635..270344+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048981 ID=TCONS_00048981|Name=TCONS_00048981|organism=Clytia hemisphaerica|type=transcript|length=18710bp|location=Sequence derived from alignment at scaffold_15:251635..270344+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_15:251635..270344+ >TCONS_00048981 ID=TCONS_00048981|Name=TCONS_00048981|organism=Clytia hemisphaerica|type=CDS|length=67122bp|location=Sequence derived from alignment at scaffold_15:251635..270344+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048981 vs. Swiss-Prot (Human)
Match: ACD10 (Acyl-CoA dehydrogenase family member 10 OS=Homo sapiens GN=ACAD10 PE=1 SV=1) HSP 1 Score: 1091.64 bits (2822), Expect = 0.000e+0 Identity = 523/1018 (51.38%), Postives = 693/1018 (68.07%), Query Frame = 3
Query: 96 KAVIFDMGGVIIPTPVPLVQAFAVKNNLNPKQMDDLLFKGGDKSLWGQLECGLINTQVFGELLTKRSSELFGCECKDEIISKMISDQKYYQPYPEMMSAIQTLKNHGIKTALLTNNFLLENGESVLFM-KNDFDVVVESAIEQIRKPNPRIYEIALERLSVHPEEAVFLDDLGVNLKAAKALGISTIKVSDTHSALKELSDVVNIPFENIVSGTIDVSKQHQLPLDSLQNYLESDIGLQDDGSGIILRKFKHGQSNPTYYLKFGGKEMVLRKKPPGKLLPSAHAVEREYRVMKALGENGVPMPNLLALCEDNSVVGTPFYLMDYVRGRIFSDSVPKDVAPGELRTIYNSLNDVLQKIHSVDVEKAGLQDYGKPGNYVKRQIDRWSKQYEASKTEERPSMNRLMNWLKENAPNTDKSSVVHGDFRIDNCIFDENSSKVLAVLDWELSTLGDPLSDLAYSCIIHHLPQNFPLFPGLQGIDFKATGVPTEEEIVNKYCKDMNIKEIKDWNAYMAFSFFRIAAIAQGVYKRSLQGQASSDKAKGIGGLVTVCADIGCTFIDREETKRSKE-----------------------SGS-------------SSEQQMIFSIDGLRPPVRKIYDDLIQFLDTEVYPREKEIMAERPESVRWTVHPLIEELKEKAKSQGLWNLFIPAETDPEQKYGAGFTNVEYALFCEQMGKCLYAPEIFNCAAPDTGNMEVLIKYGTEEQKEKWLTPLLDGKIRSCFGMTEPQVASSDASNIESRIERHGDEYVINGRKWWTSGANHPDCKICVFMGKTDFTADRTKQQSMILVPMDAPGVRVIRPLTVFGFDDAPHGHAEVEFTDVRVPASNILLGEGRGFEIAQGRLGPGRIHHCMRLIGYAERALDMMIERTSSRVAFGAPILKQGTIQSDIAESRMEIEQARLLTLKAAHMMDTVGNKKAAKEIAMIKVVAPRMAQAVIDRAMQSFGGMGLSGDTPLAGLFIWARVLRLADGPDEVHKRSIARMEIAQQL 3038
+AVIFDMGGV+IP+P + + V+N + + L +GG+ W + I + F + SE+ + +++ ++ + +P M AI ++ G++TA+L+NNF L N +S L + + FDV+VES +E I KP+PRIY++ LE+L + P E++FLDDLG NLK A LGI TIKV+D +A+KEL ++ V T V K ++P DSLQ YL+ +G+Q G + L +F HGQSNPTYY++ +++VLRKKPPG LLPSAHA+ERE+R+MKAL GVP+PN+L LCED+SV+GTPFY+M+Y G I+ D + P R IY ++N VL KIHSVD++ GL+DYGK G+Y+ RQ+ W KQY AS+T P+M RL+ WL + P +++VVHGDFR+DN +F +VLAVLDWELSTLGDPL+D+AYSC+ H+LP +FP+ G+ D G+P EE YC M + ++WN YMAFSFFR+AAI QGVYKRSL GQASS A+ G L +++ F +E + KE +GS +S ++ S + L PPVR++Y L F++ VYP E E+ + + + RW+ PLIE+LKEKAK++GLWNLF+P E DPE+KYGAG TNVEYA CE MG LYAPE+ NC+APDTGNME+L++YGTE QK +WL PLL+GK RSCF MTEPQVASSDA+NIE+ I YVING KWW +G P C++CVFMGKTD A R +QQS++LVPMD PG+++IRPLTV+G +DAP GH EV F VRVP N++LG GRGFEIAQGRLGPGRIHHCMRLIG++ERAL +M R SR+AFG P+++QGT+ +DIA+SR+EIEQARLL L+AAH+MD GNK AA +IAMIK+VAP MA VIDRA+Q+FG GLS D PLA F WAR LR ADGPDEVH+ ++A++E+ ++
Sbjct: 43 RAVIFDMGGVLIPSPGRVAAEWEVQNRIPSGTILKALMEGGENGPWMRFMRAEITAEGFLREFGRLCSEMLKTSVPVDSFFSLLTSERVAKQFPVMTEAITQIRAKGLQTAVLSNNFYLPNQKSFLPLDRKQFDVIVESCMEGICKPDPRIYKLCLEQLGLQPSESIFLDDLGTNLKEAARLGIHTIKVNDPETAVKELEALLGFTLRVGVPNTRPVKKTMEIPKDSLQKYLKDLLGIQTTGP-LELLQFDHGQSNPTYYIRLANRDLVLRKKPPGTLLPSAHAIEREFRIMKALANAGVPVPNVLDLCEDSSVIGTPFYVMEYCPGLIYKDPSLPGLEPSHRRAIYTAMNTVLCKIHSVDLQAVGLEDYGKQGDYIPRQVRTWVKQYRASETSTIPAMERLIEWLPLHLPRQQRTTVVHGDFRLDNLVFHPEEPEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPVLRGINDCDLTQLGIPAAEEYFRMYCLQMGLPPTENWNFYMAFSFFRVAAILQGVYKRSLTGQASSTYAEQTGKLTEFVSNLAWDFAVKEGFRVFKEMPFTNPLTRSYHTWARPQSQWCPTGSRSYSSVPEASPAHTSRGGLVISPESLSPPVRELYHRLKHFMEQRVYPAEPELQSHQASAARWSPSPLIEDLKEKAKAEGLWNLFLPLEADPEKKYGAGLTNVEYAHLCELMGTSLYAPEVCNCSAPDTGNMELLVRYGTEAQKARWLIPLLEGKARSCFAMTEPQVASSDATNIEASIREEDSFYVINGHKWWITGILDPRCQLCVFMGKTDPHAPRHRQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVRFEHVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGFSERALALMKARVKSRLAFGKPLVEQGTVLADIAQSRVEIEQARLLVLRAAHLMDLAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSSDYPLAQFFTWARALRFADGPDEVHRATVAKLELKHRI 1059 The following BLAST results are available for this feature:
BLAST of TCONS_00048981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.