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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048983 ID=TCONS_00048983|Name=TCONS_00048983|organism=Clytia hemisphaerica|type=transcript|length=474bp
cagaaaaatacaaaaaggctagttttgaaaaagcaataaaaatcaTATGA
AGCGAggcagtttttttttcttggaaaCAATCATTATTGAAATCAACGGT
GCGGATTTGCTTTCAAATGACGGTTGTTGATTTCATTTGTGGCCATGGTT
CAACAACGGTATTATATCAGTCACGTGCAAAATACATCCATTTTGGTCCT
GGAGATTGGTTGATATAGCGATATGTATCCATCTCCAAGCAGATTCTGAT
TACCCAGTGTATGGCACCTAACCACTTTAAAGAATCTCTATAAAAGACCA
ATATCAAGAACTGCAGAAATTCAAACAGATTCAACCATTGCAAAGAAGaa
gtcaaaataagaaagatAACACAATACAAGCTACCAATTAAGTTGTTGTT
TATACAAAATGCCGTGGTTCTATTGTTCAATTGTGATTTCGGTATCACTA
ATTATTGGAGCAAACTCGCAAGGT Run BLAST on NCBI transcript from alignment at scaffold_15:270501..277323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048983 ID=TCONS_00048983|Name=TCONS_00048983|organism=Clytia hemisphaerica|type=transcript|length=6823bp|location=Sequence derived from alignment at scaffold_15:270501..277323+ (Clytia hemisphaerica)
cagaaaaatacaaaaaggctagttttgaaaaagcaataaaaatcaTATGA
AGCGAggcagtttttttttcttggaaaCAATCATTATTGAAATCAACGGT
GCGGATTTGCTTTCAAATGACGGTTGTTGATTTCATTTGTGGTAAGTTGA
GACATCTCTTTATCTATCTGCTCTTGTGATAAAACTaaggattttttttg
catttgatattccgtttttgtttttttaagactgTTATTCCGGTATTTGA
GATACCTACCGgtaccatagatttataaagcccgaggggctagatgtcgg
gctttaagccatcacaggcaaaaaaaagtgaatatcggaaaaccCGCTAA
GCTTCTAATTGGTcaatcgctgaaattctattgtaatgtcacgtgacttt
aggtaggatttcctacttaatcacggcacacttttcagcaaaggCTTTAC
TTCTATGACCGGTTCGggtatttgataaaaaaaatccatttttagTATTT
AGCGACAAAATTACTGCTTTTCCGTTATCTTTTTTAACCGCATATAGTGG
TTTTGTACGATCTTTTTTATTGATGCCGGTATTCCAGTTTTTGGAATCTC
GCGAAAAATGGGCTATATTTTGCAAACCGTGAAGTGGTCGAAACCACTAC
ATAAATCACTGAAAGATGAAATCCAAAGGCTTTGCTGATAGACCTCCTGC
AGTTCAGGATACCGTTACCAATCTTTAATAAAAGATCTATAATCAGATAT
ATTTTAAATGCAAATTCTTAACGAGATAAATAATGCAGATACTTTATATA
TTAGACTATAGATCACTTAAATCCAAAAGaattatttcactttttaacTT
TATTCAGGCCATGGTTCAACAACGGTATTATATCAGTCACGTGCAAAATA
CATCCATTTTGGTCCTGGAGATTGGTTGATATAGCGATATGTATCCATCT
CCAAGCAGATTCTGATTACCCAGTGTATGGCACCTAACCACTTTAAAGGT
GCGTAGTAaagcgaccgtagcatgaaggcagagcatccagctacggtgcg
caagttgtgggttcgaaccccagccgggtcataccaaagattcccaaaat
ggtacttgatgcctctctgcttgatgctcagcaactaaagagacggatca
agggtaagtggagaaaaccagggaaaggagtggcgccctccccttccttc
gggtagacagctatacgaaaagggagcctttgggtcgccctcgactgcgg
tcgcaaacttacttactttaaaGGTCATGGCTCCATAAGAGAATCTTCAC
AGGTTAGCAGACCACTTTGATCTTTTTCGTGAAGATTTCGGATTATTTAA
TGAGCTTTTGATCGCGTTGATTGattaaagcaaaacaatcgcaTCGAAAA
CAAAAACTAATCATAAACATGAGACCTTGTGTACCGCAGTCATATTTGCT
TATTCTTTTAGTCATTAGGCAACGTCGTCTTGAATGATTTGGCCAGGTCG
GATGAGCACATTCACCACTTGAGAGCATAGCGTGGTTTGCGCTAAATGGG
TGATCTTTTACGAGATTAAGGAATCACTAGTAAGTCATATCCGTAGTATT
CTCGGTCACTAGTAGTAAAGCTTCACGCCCCAGCTAATCAGTTATTGACA
AATAACCACACCCCGCTCTTTATCATAGCGCTCCGCATTTCACacgtcat
aattatttcaaTAAGAAATTTGTACGAGTTCCGATCCCACAGTTCATTTC
GAAATGATTGGAGAATAAAGTTAttacctttcttttgatattgtaaTTAA
TTAACGTGCAAGGGCAATTAACACAAATGAGGATGGGATTGAAAGTTGTA
CAAACGAATAAATTTGACCAGATTTGttactatttttagattcgtCGCGT
TGTGCTATTCCGTTGAAGCTGTTTTAGCACTAGACATCATAAGCTATTTT
TTCCTATTTACTAcagttttttacatttttttttttgaaataatgaagAC
ATGCTAAGCTTGTCAATCAAAGCGACAGAGTTATAATACGTTTATTATGA
TTAATTGATGTATAATCATTAAATTATCATTATCATTAAATTCCGTATTC
CGTCGACTctcatctttttttaaaaaacgtttctttcaaaattagaatat
AGAAAAATTTGTACTTCGCTACCTCTAATATTTAATAAGCATTGGAGAGT
TCATGCAACTAACCCTTTTGAGGCGACAGGAGGCGACCGACCGAAGTTGA
ACATCCCACAGTTTTGACCAGTAAAATCGAGGGCGTTAAAGTTGGTATAA
GTTATCGAACGTAGGAAAATGAAAAGCTAGTCGTCTCTGCACGACACATg
gtgttttttataataacaaactGTATGAGAAAATAAGACTTTGATggaca
aaattttaagaataatttaagaCTTTGcgatttcttgggaaaatggacaa
aatactcacaaaatggcgaaactaacatgttaagaaaatctttaggctta
aaactcaataagttaagaacatacaGAGGCTTAATTCTTGGACGTTCTTA
TTAAGGAATCGAAAACTCGTTGTTTGACATTTCTATTTAACCTGTGAAAG
TAAAAGCTGTAAAGTACTCATCTGACTTAATGATGCAATCGATCTCTGCT
TGGGAAGGGGGAAATGTAAGAAAATTTCATAGAACTGCTTTTCAAGATGT
ACAGGCATGCAATAATAATGAATCAATAATGAACTCTTTAGATTCTATGA
ACATCTGATGGTATGAtgtttcttctttgtttttagatCCATGATTTTAA
GTCCAAAAATGGGCAAATCTACATTTCCAGAACAATAAGTAAAGTTTCTT
GTAATTCTCTTATAGGTTATTAAGTTATTAAAAATCATGAACTTGATGTA
AAATACCACATGTTgtgaacattttcaattctaGCTGTCTCTAGAAGGTC
CTTATTCTTACCAAGGGTTTCAAAATTTGTCCAAACACCTTTAATGAGAT
TCACtattaatatatattttttcaattttcaatcttaaaaagataatttt
aaaatttgaaaataaaaaaacttacaaaattttatattatGTTTAATGTC
TAACAGAATCTCGTTGAAAAGTTTCCTCAAaggttaattttgaaaaatgt
attgGTCAAAAAGGcaattttgagttatttttGGGGTGGTGTATTGAAAT
CTGACCTCAAAATCAATTTGTACATTGTGTACCAAGTGAAAAGGGGTGGT
GGTCCTTTTCAAAATTAtctaaaatcagttagtactcATAGTGTTCCGgg
ctaactgcttgaccccccatGCTTGAGGGGtcaattgtttaaaaatttgt
tttctgtAAGTAGTAAGTCTAAGTGATAAATAAATTGGTGGTGAAGGAAA
ATTATACATTTGCATTCTTTTCGATCAATGATGTTTCCTCTACCAAAACT
TCGCGGAAAATTATGGGTTAACCCCTCTTTATTCCCTCTTAAAATtccaa
attgaaaaaatattttttctccaatGAGAAGATTAAATCTGAAGTTGGAG
GGTACAGTACTAATCTGATAGAATTAGTTCAAAAGGCCCATACTTTATTT
AAGGTAAAAATCTAGTTTTACTtacacccctatctcacagccccggtgaa
acttttttcctcagtggggataaaaatataaaaattccaatggggataga
aattatatttttccaaggttaaaaaatccagtggggactgccacttttaa
acattgaattccgaatggggatgaaatcaaagtaaatttcccagtggggc
tgaaattccagggtattttccccaTCGTGGACGAAATtgttgccaaattt
tccagtgggtttgtgacacaggggtgtttactTGAACATAAGTCGAGAAA
AGGACACTTCTTTTGTGGGTTGATTTGGAAGATCAATCAAATGCAGGTGT
TGAAAGGGAAATTTTATATGAGGAGAGTTTGTACACATCAACCTATAATG
ACCATAAAAGGTTTAGATTTGATATTTAACCATATATAGACAAAGTTATC
TATCCCTTTACGACAGATTGTGATAATTTGGTCTAAATTTAAACTATTCC
TTATAGGGTACGGGCCGTTGTAAATTCGAACGATTGGTCAAAAAACAAGA
GACGTTAACGAAAGAATTGAATTCTTAGAAACTAAAACGCCACACGAGAG
ACACGatttcaaaatatcattttccACTACTTTAAAAACTAAAACTGAAC
GCCTACGCAACTCCATTGAGTCGTATATAGTAAATGAAACAAAAAGCTAA
ACAAATAGGTAACGTACACGGTAATCcgatttaagaaaaaaataggaAGC
TTAAGTTAAATATTCGAAATATGCTTGTATGCTTGtaccataaatttttt
ttctcacttttttccTCAATCTCGACCCTAATAAAAGTTTTACAAAAGGG
CAGTACAAATTCATCTTCCTGTAAAcctatgaaaatgcttcctacagGCC
taacccctgtgtcacagacccactaggacCATCACCCCCAATGGAAAATT
TTATGgcaaaaataccctagaatttcatccccattcgaaattagATATTT
AGATATTGCACTCCAAAGCCATCCTCGCTGGATTTTTTAGCCTTGGcaca
atagaattttcatctGGATTGGAATTTCAGTAGAAATTCTTTATCCCCGC
CTTGTggggaaaagttccaccggggctgtgagacataCAGGGTGTTACAT
AAAATCCTAAAAGATTCCATTCTTGTGTACAAAGATCACAGAAAACTTGG
GTGTTGTTTTAAGGTGTAAGTGCACCGAAATGAATACAGGTGATTTAAAC
ATAAACCTGGAAGCTGTTTTATGGTATGTACATCCAGGCTATCCACACAC
TTAGCCTCTTAGATATGGAAGTTTTTATTTACATCCATTTTAATCCATTC
CCTAGTACTGAACTCCCGGAATCATCTGATAAGCGGGAAAATtcctaggc
ttctgctcatcctctagcgaaaataGTTTCTTAtatatataggaagtata
tctatagaggtctgcgattcagactagaaaATTCCCGAGGAAATTCTGGC
GCCGATAATGAGTGGCTGTAGTATAAAGATAGGGAATTCGGCTAGGCCGT
GCAAATTCACCTGGCAGGAGCATCCCAGAGACTACCAAAGTAGTACTTGA
TGTCACAATTAAAGGGTATAGGATCAAGGGTAATTGGAGCAATTCAGGGA
GAAAAAACGCGCCCTCCCCCACCTTGGGGTAGATAGCTATGTAAAGGTGA
GGGTGTCTACAACTGCGGTGACAAGAATATCTCGTTTTTAGAGAAATTTA
TGTATGGGAACTTTTTCATTAGCTGATTAGCCTAGAGCTAGACTACTAAT
TAATATCAGTTTTAGCTTCTTTTACAGTAGTAGAAAAACCTACCTAGATG
TTTGCTTACTTTTCGAGTGTTTGAATTAGTATTACTATTCCAAATTCCCG
TAcggctttttttcttctttttttctttgaggCAGGATTGCTCCTACGTT
TTGTGTTAAAAGAATAGTGGTCTGGAAATCGAGACTATCAGCTGATTAGA
AGTTTCGATATCTTCTAAAATCTACAGTAATTGAATAAGGCCATCGATTC
CCATCTCAAAGAATTTGCTCATCAAAAAAAGTTGTAAGCGGACGTTGTTT
GCAATCCTGGTTCGCATTccttataacaaaaaaaacCAAAGGGATACTGG
CAGTCTATCTATAATTATTCCCTTTTTAATTATCGTATTTGATTGATTAA
GCAGTACATTTGATAGAGGGAAATATAAGTGAATTTCTTAGAGTACAACT
GCTTACAAAAGCATATTAGCACTTACGCTTCCTACATTTTTCACATTGTC
CTTTGTCCAGAATCTCTATAAAAGACCAATATCAAGAACTGCAGAAATTC
AAACAGATTCAACCATTGCAAAGAAGaagtcaaaataagaaagatAACAC
AATACAAGGTAAGTGAGTAAGTTATAGTTTCTAGGTTTAAAAAGTTTAGG
TCCAAAGTGAAGTGTGATTGTTGAGAGTAGGAGTAGTTTTTGGACTAGAT
GATGCGCTCAAAAGGTCTAAGTGAGAGGCTTGGTTTGGTTGACGTTAGGG
GAACCCGTTGATGCAGGTCTAGCGTTTATCTCAttaagaaatatgaaaaa
aagttattctctaatttttgtccccgcagAAAATAACCAGATAaccaaat
cctcactgcaaaatattgtgctatttttccatccccactggatcgctaga
aaacaatagaattcaagtCCCCAGTCATAAGCAACATGGggatatcaatc
cccatcgagtttcagttcgttatttttatccccacttgcTGAAAAAGTCC
CACCGGGtcggtgagaagggggtgtattggATAGCAGACTGTAAATTATC
GTTACGTGTTACTAAGGTTGCTTAGTATAAACAAAACATAGATTATCGGC
TACGGAGTGTGCAAGGTTGTTGGTTCAACTCTGCTCCAGTCATACCTAGA
AACTGAGAACTGGTAGTTGATGTCTTTCTACTTGATGCTCAGTTAAAAAG
AAGGCAAAAGGGTAATTGGAGAAAGCCAGGGAGAAGAGTAGCGCCCTCTC
CTACCTTCGGATAGACAGCCAAGAGCATTTTGGTCACCCTTGCAAACTAA
CTCAGTATTACTTCATTGATTCTTTTTAGCTACCAATTAAGTTGTTGTTT
ATACAAAATGCCGTGGTTCTATTGTTCAATTGTGATTTCGGTATCACTAA
TTATTGGAGCAAACTCGCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048983-exon-scaffold_15-1491911889:270501..270641 | TCONS_00048983-exon-scaffold_15-1491911889:270501..270641 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1510915933:270501..270641 | TCONS_00048983-exon-scaffold_15-1510915933:270501..270641 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1575043694:270501..270641 | TCONS_00048983-exon-scaffold_15-1575043694:270501..270641 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1491911889:271358..271498 | TCONS_00048983-exon-scaffold_15-1491911889:271358..271498 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1510915933:271358..271498 | TCONS_00048983-exon-scaffold_15-1510915933:271358..271498 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1575043694:271358..271498 | TCONS_00048983-exon-scaffold_15-1575043694:271358..271498 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1491911889:276411..276508 | TCONS_00048983-exon-scaffold_15-1491911889:276411..276508 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1510915933:276411..276508 | TCONS_00048983-exon-scaffold_15-1510915933:276411..276508 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1575043694:276411..276508 | TCONS_00048983-exon-scaffold_15-1575043694:276411..276508 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1491911889:277230..277323 | TCONS_00048983-exon-scaffold_15-1491911889:277230..277323 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1510915933:277230..277323 | TCONS_00048983-exon-scaffold_15-1510915933:277230..277323 | Clytia hemisphaerica | exon |
| TCONS_00048983-exon-scaffold_15-1575043694:277230..277323 | TCONS_00048983-exon-scaffold_15-1575043694:277230..277323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:270501..277323 + |
Blast
The following BLAST results are available for this feature:
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