TCONS_00049304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049304
Unique NameTCONS_00049304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049304 ID=TCONS_00049304|Name=TCONS_00049304|organism=Clytia hemisphaerica|type=transcript|length=1288bp
GtgtttctttcagttttttttcaatcataAATCAAGAAAATTAGTGAAAA
CATCTGGATTTTTCTCTACAAAGTTCTCtcttccttgaaaatttgaatat
tctCAGTTTCACATGAAAATTTAGAGGGAATGATTTAAGCTAAGGTAATT
GATACTGGTTATAAGAGAAAGCTGATGCTAGccCCGAAGATTGAAAAAGA
TATTCCATCCTATGCTGAGGAAAAAACTGAAGAAACTAAACCGTCACCTC
CTTCATATCTTGAGAGAATTTTATCCATGACTGCTGACATTGAGGAGATA
AAACAACCTGAAGATGACGGGCAAGAAACGACAAGCGTTGGTGTATCAAC
CGAGGAATATCATGGAGATAATAAAGATATGACACCACCTGATTTGAAAG
TTATGGAGATCAATGAAGAGGGAATTGAACCAGAGGATGAACACTCAGAG
ATTTTAAGACAAGCGAAATTTGAATGGCTGATTCCAAAAGATTTCGGAAC
CTTTCAGGTTGTACATTACGATCGGCCAACCGTTCCCGACCCATTCAACG
ACATTATTCAAAGCGTCATGGAGGAAAACTCGTCAAACAAAAACCGGCTT
TCGGTTAACCAATCAAAACGAGCTACACCTAAATCTCCACGCACGCCTCG
GACACCTTTATCCGCGCGTTCAACTACAAGCGGTCCACCAGCACCGAAAC
CTTTAAAAGGAAAAGAGCGCGTTTTGCACGCGGATAAAGTCTACAATTTA
TTAATGGAGCTCgatcaaaacaatagaaacatTAGCCAATCATATCGCAC
GAAAAGCCCCGTTCTGGCACCTAATTGGCTGATATCTTCGCGTCCGATCT
CCTCAAACTCTTTTGCGCCATTACCTGAGATCAATGCAACAACGaagaaa
cagaaaaagaaaaagacacaaaaagaaGTCAAATTTACTacTGAAAGTGT
TCGGCGTACGATATCAAAGGTATTAGAAGAGAACTTGAGAGACAAAGCGT
ACGACgccgaatatttcaaaacacATTTATGTATACTGACAGACATTATC
AAGAGTAAAATCAAACGATTTTATGGTCCTCGGTACCGTGTCATTTGTAA
TATGAACGTTTTCGAGATCAAAGGACAATCAGTGAGAACGGCAAGTCGCT
GTTGTTGGGACACGGAAAGAGATAATTTTACGGAATGTATTTTTGAAGGG
AATGGTTTTTCTATTACTTTTGTGGCCTATGGTGTTTACCTGGAATGACC
ACTGATTGGCTGAAATTgtaatcaaagcaaaattttcc
Run BLAST on NCBI

transcript from alignment at scaffold_154:660487..665090-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049304 ID=TCONS_00049304|Name=TCONS_00049304|organism=Clytia hemisphaerica|type=transcript|length=4604bp|location=Sequence derived from alignment at scaffold_154:660487..665090- (Clytia hemisphaerica)
GTGTTTCTTTCAGTTTTTTTTCAATCATAAATCAAGAAAATTAGTGAAAA
CATCTGGATTTTTCTCTACAAAGTTCTCTCTTCCTTGAAAATTTGAATAT
TCTCAGTTTCACATGAAAATTTAGAGGGAATGATTTAAGCTAAGGTAATT
GATACTGGTTATAAGAGAAAGCTGATGCTAGGCAAGTCACTTTGTTTAAA
ATTGCATACACACCCTTTGTTGGGCAGGAGGGGGTGGTGGGGCTGGGGTA
GATATCTAGTTTAATTTTTTTATAAGAACATCCAAAGTTGTGGACGCCTT
CGGATGTTTTAGAAATTTTTCCAGTTTTAAGCCTAAAAATGTTCTCAAAC
CCTACCCTTAAGCTCGGGTCAATCTATGGACCGTTAGCCTCTCTCTGCAT
GTTTGTGCTTTGGTTCTTTTGGCGAAAAAAGTTCTAGCCTAATTGCCATT
CATCAATGATGACAATGATATCCAATATGATTAACAGTAACAGGAATCAA
CCCTAGAAATCAGCTATAAATTGCTTTTTCAGGAAGTCTCTCACAATATC
ATAAGAAACCTCAGTCTAGACGACGCTTAAGATAATAAGAAATAGGATAT
AGAATTACTTCTCGGCTAAAAAGTATTGAAGGAAGAAATATATCTCTTGA
TTAAACTTAAAAAATATTTTATGAATTAGAGGTACAGACATAGTCGAAGG
ACTTGATCAAGTATATTTTATTTTTCTTAGCCCCGAAGATTGAAAAAGAT
ATTCCATCCTATGCTGAGGAAAAAACTGAAGAAACTAAACCGTCACCTCC
TTCATATCTTGAGAGAATTTTATCCATGACTGCTGACATTGAGGAGATAA
AACAACCTGAAGATGACGGGCAAGAAACGACAAGCGTTGGTGTATCAACC
GAGGAATATCATGGAGATAATAAAGATATGACACCACCTGATTTGAAAGT
TATGGAGATCAATGAAGAGGGAATTGAACCAGAGGATGAACACTCAGAGA
TTTTAAGACAAGCGAAATTTGAATGGCTGATTCCAAAAGATTTCGGAACC
TTTCAGGTATGTTTACAATTATCACAGACGTTTTTTGGACGTTCATCTAA
CGTTGGACGTTATGGGCGTTAGGCTGACGATATTTTGACATTTTGTGACT
TAAATAAAAAATGAATCAAGAGAATGAATTTGAAATTCATCCCAAAACTG
CATTTAAAACTTCAAAGCAGTTCTTCTAGCCAGGGTAGATCCTCTAAAGA
GCTCGCCTAGTAATCATGAAGCGCAAAAACCGTTTTTTATCATATAAAGT
TGATTCGCGACATTGTCATCGTTCATTACAGGGAAAATAATATGCAAATG
GTGGTATACGGAATTTTCTTCGGCTTTTGGGTTTTTATTCAGTGATTTGT
CTTGACTGTAGAATTGTCTAAGTTGACTCTCGCAAATTCGAATTCAAACG
GGAAGTCTTCTTTGTTCGAATAACAGAGAGGTTGAAATTATAGAAAGTAA
TTTTCCCTACGACGGGAACTGATAAATAAAGTCTATTCACGATAAGTGTG
CACTCTTTTTTCATTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTA
TAAATTTGGTATCATTGTAAAGATATTACTGAGTGGAACAATTTAAAATA
AAAAAGTTCTTGAAAAATCCTAAAAACGAAGATGAAAATGAAGAAGAAAA
AAATGAAGATCTTGTAGAGAAGTGCTATAACTTTCATTTTTACTGTAGTG
AATCTTTGATTATTGAACGTCATCACTGTGAAAAAATTTCTCAAATATAA
TCATTCAATCAAAAGATATCAAACAAAGTTATAAGCTGATTGACGTCTAA
AAACCCTGTTTTCTGCTGTTTTCTGCTGTTTTTTGGGGTCAATCACTTAT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAATATCTTTCCAATGATACCAAATTTATAAAGATT
GAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTA
TCGTGAATAGACTTTAGTTCGAATTATAGAAAGCTTCGAATAATAGAAGT
TACAATTAGCGAAAGTCCATTGTTGCCTCTTTACTTTTTTTAGGTTGTAC
ATTACGATCGGCCAACCGTTCCCGACCCATTCAACGACATTATTCAAAGC
GTCATGGAGGAAAACTCGTCAAACAAAAACCGGCTTTCGGTTAACCAATC
AAAACGAGCTACACCTAAATCTCCACGCACGCCTCGGACACCTTTATCCG
CGCGTTCAACTACAAGCGGTCCACCAGCACCGAAACCTTTAAAAGGAAAA
GAGCGCGTTTTGCACGCGGATAAAGTCTACAATTTATTAATGGAGCTCGA
TCAAAACAATAGAAACATTAGCCAATCATATCGCACGAAAAGCCCCGTTC
TGGCACCTAATTGGCTGATATCTTCGCGTCCGATCTCCTCAAACTCTTTT
GCGCCATTACCTGAGATCAATGCAACAACGAAGAAACAGAAAAAGAAAAA
GACACAAAAAGAAGTCAAATTTACTGTAAGTATCTATGACGCTATGTTGG
TTTGCTCTCTCAAAGGCCTCTGTAAAGCCATAACACATCTAGAAAAATTT
GAACATGAAGAATATTCCTAATATAGTCTCACGCATTTAGTTGTGAAGAT
TTCAGGACGCTCTTGTTTAGAGCACTCGTTAACGGTGCATAAGGTTGTGA
TTTCAACCCAACTGGGATTTACTAAAAGAATTGTAAATAGTACATTAAGC
CTTTAAGACTCAGTGTAGGGGTAATGTAAGTAGAGGCGCTCAAGAAAAAA
GAGTGGCCTCACCCCTTAGCATAAAATATCAAAATTAAGTAAGAAAGCTA
ATTAAAAAGTAAGACTAGGTTCACCCTCAAATGCGGTCACAAAGCTTTGG
AACACACAATCTTTAACAAGTAAAAATAGACAATTTGAAGCATTTTTAGA
GTGCTTTAAAGTGGTTTAACATATTTCATAGGGTTAGACGTCTAAGTACT
TTCGTAGCCTTTTTTATAAGAACATGCTCGAAAAAAACTTTCCCTGGTTA
AATTAAATTAAGTTAAATTAAATCTTTCGCTAAGTGATTACATTTTTGCC
ACGGTAAACAAAGTGCCAATTTGAGCCTGACCAATTTTACACCGCTTCTC
AAGGTTGTACAAGTGGAGTCAACTCTCACAAATTCCAACTTCTATATTTC
GAAATAATCCCCTCAGTTTGGCTACTAGTATAAAATGCTTTTTCTTTAAT
TCAAAATAAATTATTTGTTTCTGGAGGATCGAATTAGAAAGAGACAACTG
TACCTTAATGGCCCAAATCTTGAGCATACGCAAATTTGGACTGGAAGTAA
CTACAAGATTAGGCATAACTTTATCTAGAACATATAACGAAAAAAACAAC
ATAAAGTTTTATTACAGTTGAGCCTTTATAACTCGAAAACATAGGGGCCA
CAAATTTGTTCGAGCTATGGAAAATTTGAATTATGAAACTTCGTCTATGT
TTGTTATCTGTGACAGAACCAGAAAAAATTTTCGAGTTGAGGAGATATTC
GAATCATAGAGGTCCTACATATTTTAGAAAGGCAGGGCAGCGTCCGTTGA
TGGCCAGAAAGGGCACTTTTTCTTATGGTTTTCTGCTAAAAAGGCTGTTT
TTACCAAAATTTTAGAGATTTCAGGAGGGGCGGCAGCGTCCGATAACCGG
ACGCTAAAAGGGCATGAAAAATTGCCTGTTCTAGATTTGAAGGCCTTCAT
TTTTTCTTATAACATAACATTTTTGCATTTATTTTTGTTTAGACTGAAAG
TGTTCGGCGTACGATATCAAAGGTATTAGAAGAAAACTTGATAGACAAAA
NTTATAACTCGAAAACGCTAGGGGCCACAAATTTGTTCGAGTTATGGAAA
ATTTGAATTATGAAACTTCGTCTTGTTCGAGTTAAGAGGAGGTTCGAGAT
TTGAAGGCTTTCATTTTTTCTTATAACATAAATATTTGTATTTATTTTTG
TTTAGACTGAAAGTGTTCGGCGTACGATATCAAAGGTATTAGAAGAGAAC
TTGAGAGACAAAGCGTACGACGCCGAATATTTCAAAACACATTTATGTAT
ACTGACAGACATTATCAAGAGTAAAATCAAACGATTTTATGGTCCTCGGT
ACCGTGTCATTTGTAATATGAACGTTTTCGAGATCAAAGGACAATCAGTG
AGAACGGCAAGTCGCTGTTGTTGGGACACGGAAAGAGATAATTTTACGGA
ATGTATTTTTGAAGGGAATGGTTTTTCTATTACTTTTGTGGCCTATGGTG
TTTACCTGGAATGACCACTGATTGGCTGAAATTGTAATCAAAGCAAAATT
TTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031282XLOC_031282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049304-exon-scaffold_154-1575043694:664910..665090TCONS_00049304-exon-scaffold_154-1575043694:664910..665090Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1575043694:664035..664360TCONS_00049304-exon-scaffold_154-1575043694:664035..664360Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1575043694:662316..662747TCONS_00049304-exon-scaffold_154-1575043694:662316..662747Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1575043694:661019..661048TCONS_00049304-exon-scaffold_154-1575043694:661019..661048Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1575043694:660487..660805TCONS_00049304-exon-scaffold_154-1575043694:660487..660805Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1510915933:664910..665090TCONS_00049304-exon-scaffold_154-1510915933:664910..665090Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1510915933:664035..664360TCONS_00049304-exon-scaffold_154-1510915933:664035..664360Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1510915933:662316..662747TCONS_00049304-exon-scaffold_154-1510915933:662316..662747Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1510915933:661019..661048TCONS_00049304-exon-scaffold_154-1510915933:661019..661048Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1510915933:660487..660805TCONS_00049304-exon-scaffold_154-1510915933:660487..660805Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1491911889:664910..665090TCONS_00049304-exon-scaffold_154-1491911889:664910..665090Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1491911889:664035..664360TCONS_00049304-exon-scaffold_154-1491911889:664035..664360Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1491911889:662316..662747TCONS_00049304-exon-scaffold_154-1491911889:662316..662747Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1491911889:661019..661048TCONS_00049304-exon-scaffold_154-1491911889:661019..661048Clytia hemisphaericaexon
TCONS_00049304-exon-scaffold_154-1491911889:660487..660805TCONS_00049304-exon-scaffold_154-1491911889:660487..660805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:660487..665090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	2.7649	0.908768	0	0	0	0	0	0	0	0	4.01576e-09	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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