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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049434 ID=TCONS_00049434|Name=TCONS_00049434|organism=Clytia hemisphaerica|type=transcript|length=2988bpRun BLAST on NCBI protein sequence of TCONS_00049434-protein >TCONS_00049434-protein ID=TCONS_00049434-protein|Name=TCONS_00049434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp MQTLHSMFKSNPPEENLSADLNCKLILALYDFQPSFNDVHVAEAWLAVQLRun BLAST on NCBI transcript from alignment at scaffold_159:2874..21692- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049434 ID=TCONS_00049434|Name=TCONS_00049434|organism=Clytia hemisphaerica|type=transcript|length=18819bp|location=Sequence derived from alignment at scaffold_159:2874..21692- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_159:2874..21692- >TCONS_00049434 ID=TCONS_00049434|Name=TCONS_00049434|organism=Clytia hemisphaerica|type=CDS|length=68472bp|location=Sequence derived from alignment at scaffold_159:2874..21692- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049434 vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2) HSP 1 Score: 505.753 bits (1301), Expect = 9.868e-159 Identity = 338/964 (35.06%), Postives = 545/964 (56.54%), Query Frame = 1
Query: 1 MQTLHSMFKSNPPEENLSADLNCKLILALYDFQPSFNDVHVAEAWLAVQLEAHSNLSLLDNKLCLKHLTKFFGTALNFFQSDHMDVVKAAANYMKEASEKCMESYI-DILEEDVTSNSS----SFLKILKIMESGLTYKFQPVWNIVLQSLQYLYATYGRLFPNQMVYSVANVIQMYSGPAAPFFNNLKKTIGAAFTSMGPKLILNDTPLELIKDSSDCQFPRAWLLPIMKDSIKQTELQYFIDEFLPVAAHLKRRGEECRKNKEDLEAKVYETLLSQVWSLLTGFCHKPTDVSTAFKNIAKVMGSALTDQKNLRQLVIQALRNLISTA--EEESTKFIGQFAKNYLPILFNLYTSD--DEDCKGISLHVLEGIRSFLIVADEKLV-LMFXXXXXXXXXXXXXXXXXHQLMDLIVSMVKYCDDNHLNKLFKLMLTHIDSKDRSMQKKSYRMLEEMLEANSESCKKQISVRFDEIXXXXXXXXXXXXXXXXXXRLRCLSCLVKRLTRDQKDFLQAIIPEVILCTKEIGVKAKTAAFELIVDIGTALVFLSDKPKEECIEEYFTLVMAGLAGSPHMISGTLLAFTKMVFEYRYCLAEKLIGSLLEAAILLLKHKSSDVVKASLIFVRALVKILDASELTGHLGTMINNLFAWSATSKSAHRQQIRIILERLDKKCGYATIRPLVPEEHRKFIVQIHKQMEXXXXXXXXXXXA-------DEGDDVIEQKENTWEDILAESADEEEESVHKRPNKQRXXXXXXXXXXXXXXXWIME--GDETVDLMDPKIAQNIVGTRPKL-HARKRGGASAGFEMSSDGKFMIDNKTNDQTNNEDDIT----EKPLDIGQQDMLAGFDKTPKQLKAGKRKMLEDMPESEGGKFEYQPGGRGIHXXXXXXXXXQPAPKRRF-GGEYKAKKAGGDMKLKGKPDPYAYIPLDRQKLNKRKRAKLTGQFNSMVKATKRGA 2817
MQ HS+F + P LSA+LN ++I ALYD+ PS ND+ AWL V +AH NL L L L HL +FFGTA+ S H V+ AA +KE ++C+ ++ DI VTS++S S K+ + +E GLTYKF W+ VLQ L + GR M + ++ + P P L + +GAA TSMGP+++L PLE+ FPR+WLLP+++D +++T L +F FLP+A LK + + + +E+K+Y+TL Q+W+LL GFC +PTDV+ +FK +A+ +G A++++ +LR V QALR LI+ E + +FAKN+LPILFNLY D VLE IR++L + D +LV + S + LD S + ++DL+V++ D+ ++KL+ + +++SK +QKK+YR+LEE+ + + +++K L DSL S +K PRL+CL +V++L+ + K+F+ A+IPEVILCTKE+ V A+ AF L+V++G A + +EE ++ Y L+ GL G+ M+S ++LA T ++FE++ + + LLE LLL ++ DVVK++L F++ V ++D + L H+ ++ + S + R ++R + + +K G+ ++ L+PEE+ + +V I K R KR + + A +E ++ + K ++ E+ILA+S DEE+ +R + + K + ++ W+ E GDE ++ +DPK+AQ ++ T+P RK+ GF++S+DG+ +I + + E++ E+ D + ++ + + + ++P +YQ GG GIH +P K+ G EYKAKKA GD+K KG+PDPYAYIPL+R KLN+RK+ KL GQF +VKA +RG+
Sbjct: 346 MQAFHSLFHARPGLSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKECVAPHMADI--GSVTSSASGPAQSVAKMFRAVEEGLTYKFHAAWSSVLQLLCVFFEACGRQAHPVMRKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESKIYDTLQWQMWTLLPGFCTRPTDVAISFKGLARTLGMAISERPDLRVTVCQALRTLITKGCQAEADRAEVSRFAKNFLPILFNLYGQPVAAGDTPAPRRAVLETIRTYLTITDTQLVNSLLEKASEKVLDPASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVILCTKEVSVGARKNAFALLVEMGHAFLRFGSN-QEEALQCYLVLIYPGLVGAVTMVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVTVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVLVNIRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSRGKE----QRKLARQRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPGRGRKK---DHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPP------QYQAGGSGIH---------RPVAKKAMPGAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRGS 1284 The following BLAST results are available for this feature:
BLAST of TCONS_00049434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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