TCONS_00049557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049557
Unique NameTCONS_00049557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049557 ID=TCONS_00049557|Name=TCONS_00049557|organism=Clytia hemisphaerica|type=transcript|length=244bp
atttgatggttctggtgaatgtgatggttaaattgatggttctggtgaat
ttgatggtggcattgatggTTGTGGTGAATGTGCTGTAGGAGTTGATAGT
TTTGGTGAATTTGCAGCAGGAGTTAATATACTGATAAATTGTTATTGAGA
TGTTATTCATGGATGTAATAACAACACGTTCATTAACTAGCAAAAAATTT
CAGATTAACCATAACTGTATTTTCATTACATCCATGAATGACat
Run BLAST on NCBI

transcript from alignment at scaffold_160:18889..19132

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049557 ID=TCONS_00049557|Name=TCONS_00049557|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at scaffold_160:18889..19132 (Clytia hemisphaerica)
atGTCATTCATGGATGTAATGAAAATACAGTTATGGTTAATCTGAAATTT
TTTGCTAGTTAATGAACGTGTTGTTATTACATCCATGAATAACATCTCAA
TAACAATTTATCAGTATATTAACTCCTGCTGCAAATTCACCAAAACTATC
AACTCCTACAGCACATTCACCACAAccatcaatgccaccatcaaattcac
cagaaccatcaatttaaccatcacattcaccagaaccatcaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031428XLOC_031428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049557-exon-scaffold_160-1491911889:18889..19132TCONS_00049557-exon-scaffold_160-1491911889:18889..19132Clytia hemisphaericaexon
TCONS_00049557-exon-scaffold_160-1510915933:18889..19132TCONS_00049557-exon-scaffold_160-1510915933:18889..19132Clytia hemisphaericaexon
TCONS_00049557-exon-scaffold_160-1575043694:18889..19132TCONS_00049557-exon-scaffold_160-1575043694:18889..19132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:18889..19132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.91007	0	1.13748	8.08969	10.8443	8.12184	3.55393	7.92381	11.9638	3.93228	13.4634	5.82576	11.016	14.3918	5.06559	7.7881	1.79328	5.62961	4.07763	0	0.96712	0.879252	2.71683	4.84941	15.0356	11.109	9.36199	12.3999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top