TCONS_00049553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049553
Unique NameTCONS_00049553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049553 ID=TCONS_00049553|Name=TCONS_00049553|organism=Clytia hemisphaerica|type=transcript|length=1308bp
Cagagattaaaaataaaacttcttgcttaatatttttttggttttggttt
tgtttgatgagagatttatatttttttggttACTGTCTAAAGGCACTATA
CACATcctgattttgaaatatttggttGAATCTGCGGTATATGGAATTTA
TCAAAAGTTTTGACTCGATGAAGAATAATTTTAAACGACAATTCCTTGAA
ACATTTATTTGACTAACTGAGACTGTTGGACTCAATGAGGGATTTATTTC
CTTCTCGATTACTTATTTTGTTGATTTGGGCAACTGAGACGTTTTGAAGG
CAACAAAAAAGAAGATATCATGTTAAAAGCATTGAAATtcaaaagcaata
aaaaaGAATCGGTACGCGAGGGTCGTCATTCTGTGCAATTCTACATGAAC
CAATTATGTCGTCACTTGGATCCACAACTGCGTACCAAGAGTCCATCAAA
GAAACTCTTGAAAGGGTTGATATCAATCGAAAGTTTGTTGACGTCACTCG
AAGTTGATCTTCGTTCAAATCCAAATGCAACGTGGTTACGAGAATTTATT
GATGAACCGAATTGTGGACATGTTGTTTTGTTACGTTTCTTGAAATATCT
CCAAGATCATTCATCTCCTGTTGCCATGGCAAATAGTCTGGAACGAGCTA
ACAACTATAAGAATAAGAAAACTGATGCTTTATTGTCCCGAGAGCCGaaC
GACGAACATCTATGTCTTCTTTGCTTGAAAGCTATCGTAAGAAATAAGta
tGGTTTTCATAAAGTATTAAGTGCACCACGTAGCCTAGCAACGATGACTT
ATTGCTTGAGGCTATCTaatgtcaaaacaaaaatcgCAGTCCTGAGGATT
CTTTCCGAAGCATGTGATCACGGTGGGGGATTCGATAAAGCTTTACAAGC
ATTCGAAGATTACAagcaaatcaaaaaagaaagatatcgCTTCGAAAGTT
TGGTTCATTCTGTTATATTGAAAGGAAAACAAAGCACTCCAACTTATCAG
GAAGTTGTTGTACATTTCTTTAACGCACTATTGAGTAATGCACCCTCATT
GAATCAACGTGTTTTTCATCAACAAGAATTAGAACAAGCTGGATTCACTG
CTGAGAGAGTCGAACAGACGCTGGAGGGATTGAGCTCAGAAGGTATTTAT
GACGAGCTAAGCAAATGGAGGAATAACTATATTGATGTCTCAACAACACT
TGATGAATTCGTATCTATGAAATCCCGATCCACCATGCTTCGAGATGAGG
TTGATTTGCTGCAAGGAAAAGTCGAGCAATTCCAAAGGGAAAGAAACACA
TTACAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_160:225101..237479-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049553 ID=TCONS_00049553|Name=TCONS_00049553|organism=Clytia hemisphaerica|type=transcript|length=12379bp|location=Sequence derived from alignment at scaffold_160:225101..237479- (Clytia hemisphaerica)
CAGAGATTAAAAATAAAACTTCTTGCTTAATATTTTTTTGGTTTTGGTTT
TGTTTGATGAGAGATTTATATTTTTTTGGTTACTGTCTAAAGGCACTATA
CACATCCTGATTTTGAAATATTTGGTTGAATCTGCGGTATATGGAATTTA
TCAAAAGTTTTGACTCGATGAAGAATAATTTTAAACGACAATTCCTTGAA
ACATTTATTTGACTAACTGAGACTGTTGGACTCAATGAGGGATTTATTTC
CTTCTCGATTACTTATTTTGTTGATTTGGGCAACTGAGACGTTTTGAAGG
CAACAAAAAAGAAGATATCATGTTAAAAGCATTGAAATTCAAAAGCAATA
AAAAAGTAAGTATAATTCTTCAGCAGGTACTATATTTACTATCAATCGAT
TTTTGCCAGGATCGAAAGATATGGAAATGCATCGACAAGCTACCTCAAAA
TCACTCACCTCTGGTGTTGGGATCTTTATGAAAATTCACAAGATTCATAA
TAAATTCCCGGAATTAGAGTCTTTTTCTGCCAGAACTTTGCATTTTGATA
ATTTTTGGTGACGATAAGTCCAGTGAAGTAAACTAGGAGCACTCGGTGAG
GTCACCATTTTGAAAGAAAAACACTAAAATCCAAATAAAAAAAGCTTTAA
AGTAGAAAAATATAATCAAAAAAAGAAGACAACAAATTTGCAATGCCCTA
TTTACAAATAAAAAAAATTTCCTAGAAGAAGAGGGATGAGCTGAAGTTTT
TATAAGGTACTTCACTAATTGGTCATATGAAGTAATGGAGATGACGTGTT
CTTTTGAAAAAGTAAAGAAATTGTTTTTGTTACATGTTAACGACCAACCA
AATCAAATGAGAGCTTGTAAAAACTCCAGCTTGTCCCGAAGAAGGGACTT
AGAATCTGGCGGACTGTTTACGTTCTATTTAACCAAAAATTCAAAAGTCA
GAATTACCATATACGACATTCCACCTAGCTATCCAGTCTATCGAAATGCT
TTAAGTGGGCTTTAGCTAAAATTTTTCCTGTCTCACAATATCGACTACAG
TATATGGCCCCCAAAACGGAGACGGCCCCCAAAACGGAGGTTGTCATTAA
AATGAGGATTCTGACTTGTAGATTTATCAGAATTAAACGATTTTTGTTTA
TTTAAAAAGAACGATGGTTATACTAAAAAATGAGCATGTTTTTGATGGTT
TGAGACAGATTCAAAATAACATATTTGCGTATGAAGGAGATATTTTAACA
CCAAAATCAGATAAAAATTGCATATAGCTCACTCTAGCTCCTTGGATATT
GAAAATAAGTTATGAAAATGGGGTATAGGAAACTTTCTACACCTAATGCC
GTTCAGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTTAATAATTTGATTTTAACTACACCTCCGTTTTGGG
GGCCCCAAACCTGCATTTTGACAACCAGGGGTATACTGTAAAAATTTTAT
CAAACTAATTTATGCCCAAATCCCTCTAAATCACATTTCAAAACTATGGT
CAAAATTTTGTATTACTATCTTAAATATATCGCGAGAAATCGCTAAAATT
GCAAACCTCCGTTTNTGATGACTTGTTCTATTGTTTTCACTCTAATTACC
CCGAAACTCATTAAAACAAATTTATTATTTAACGGGTATGGCTGATTATC
TGTTTTTTATAAGAAACAGAAGTTTTGAAAGACTACAGTTACTGTCTGGC
TAATTAGAACCAACAATCTCTCAAGCTAACGGTTGTAGGTTAAAAGGACT
TTTACACCCCTGTATCAGTCTTCATTGAAATTGAAACAACGTTATGTGCC
AGCTGGAATGTGACTTCAGAGAAGTTTTCCAATGTAGATGAAATTTCATG
GTATTTTGTCATTGAGGGCTGTTGATTCGTTGACTCTGAGCTGCGTGATC
TTCAAATGGTTGGTTAAACATTTAACTATAAGATGCTGTTTTGGCGTTTC
AGCAAAATTTTCTTATAAATTTAAATCAATGAAGAGCTTAATTTCTAATG
GCAATATGAAAAATCGGTAATGAAGTGTCATTAAGAGAAGTTTCTTTATA
GACATGCGTTTTTGTTTTCTGTCAATTACCTTGTTTCTAGTTTCCTCATT
TTATCTAGAATGTTTACCGGAGTTGATGTTTTTCTCTTATCACAGGAAAA
AGTAGAGGATTTTTTGAATGGACTTTTGAAATTTTGTTTGGTGATTTTTG
TTATGATTTTTGAAACTGTATATTGTTTAAGTAGCTTTGGATAGGTGCAC
TTTGAATGAACATTTTATGACAATATTTTCAAAATGTCAAAAACTACAAT
TTTAACTTTTTTGTAAACTTCTATTAAAGCAGTCATAGGGGGTTTTAGAC
CATGTCAAACTTATGAGATGAAGAGATCTATAATTGTAATTTCATTGTCT
TTTAACGAGCGTTGCTCTCTTCCGCGTGTTTCCAACGTATTTTCTCTATT
GTCTTAGATCCGCCAGTGCAAGTGAAGGTTTTGGAAGGGGTTATCTATGG
TTTTAGATAAAAAAGAATACTTTTCCCATGTATCATAATTTCAAACAATC
TTTTGTCCAGTTTTCTTTAATCTTACTCTTTGATTATTGTAAGTATTAAA
GGGACATTAAAGTAGTAAAATGTAAACATTGTGCAAACCACGTGTCATTA
AAGAGAACAATTAAAATCACGTGTTNAGTCGACGAGCCTAACGAGAACAA
TGATGAAATCGACGAAACTGATAGCGGTTATCAATCGCTGAAGCCATTTT
CTCGGCGATCGCTATCCTACGATAATATTCACGACTTTGTGACGGAACAA
GACAAGAAAACCGACAAAATGTCACCGACTAAACACGACTATGACATGAA
TACGCCTGAACTAGAAATTGGAAATTCCGACAAACTACAGGACAAAAACT
CGTTACCAAATATACAAAATAAAAAGTCGGGATTACCGAAAAACGACAAT
TTCACTGAACCGAGAAACGCTTTTTCAGACGATGAAGATTTAACTCGAGT
CATTGACGACTGCTCACCGAGAAATTACGAGCGTCGAGTTTTCGAATACC
TTAAAGAAGATGTAGATGCACTTAGCACTGTTAATCATCCAATTAGCCGA
CATTTATCGTACGATGTTAACATGCCTGGGAACTATAATACTATACATTC
AGGCTCAATGAGTAGTCATCAATTGAAAACGTTGAAACACATGGTTTCTC
TTTTCAAACCAAAAATCGGTGGAAACCCTTTGGAAGCTCAAGAGGAGCAC
GGTTTTAGAGTAAGAAACTCCATTTGAAATTCTCCATTTACCTCAATTCA
ACACCCTTTTACGCCCTTTTCACGCCTTAGTAGGTATTTCTGCAACCGCA
CTCAGTCAGAGGCTACTGAAAGGTTTCTTTTTTGATAGCTATTTTCCGGG
GTGCCATTTTTTTCTCCCTGGATTGTTCCACTTAACCTAGATCCTTCTCT
TCAATTGCTGTGCATCAAGCAGAGATATATCAAGCGCCATTTTGTACCAG
GGGGCACTCGATTCAAAAAAGCAACCATACCTGCGGCCCAAAATGAGGTC
TTTGAAATCAGCCTTATACAGTGCCCTTTGGGAAGCTTGAAAAAGGGTCT
AGCCTTGAGTGCCCCTTGGGTTTTGTACTAAGTACGAAGTTTTTGGTATG
ACCAAAGATAATATTTTGGGTTGAATTCTTTCTAATTCCTTTACCGGATA
ACCAATCTTTTAAATCACCTTTTCGTTCTCAAATCGGAAATAAGAAACAC
ATAAAAATGTCAAAAACATGTGATAAAATACATTGTTCTGTTCAAATTTT
GTATCAGTATTGTGGTGCAATATTATTTTCAGAACTTTGACAACCAAGTG
TAAGATTTAAACGAGGCTCTCGTCTAACAAGAGTATACAGCAGAGGTTCC
GTTTAAGTCTCTCCGTCCTGGAGAGCATTATAGGATTTTTTACAAAAGTG
AAACATAAAACACTTTGAAAGAAAGTGCATTTTATGGTGAAAATACTGAA
AAAGATTTGCAACATATTGAGAATAATTTGATAATAATTTTCTGATTGTT
GATATTTTTTGGTATCTGATTTGACATAGCATAGTGGTCATAGATAACTT
CATTGAAAAAGCAAGTTTCTTTTATGAAGTATTTATTTTTAGAATATCTT
TATTTGGAAATGTGAATTGCATTTTATCAATTCGATTTCTTGTATAAAGG
GACCAAGTGAAGTCAATAATACACCCCTGTCTCACAGCCCCGGTGAAACT
CTTCCCGCTGTGAGGATATAAATTTCTATCTAAATCCCAACGGGGATAGA
AATTCTATTGTTGCCAGGTTCAAAAATTCTAATGGGAGTGGTTTTGTAGT
TAATTCTTTCTCGAATTTCGAATAGGGATGAAATCAAACTCAATTTCCCA
GTGGGCCTGAAATTGTAGGGTATTTTTCCTACAGGAGACGAAATTTTTGC
CAAATTGTAATGATATTGTAAAACACAAGTATTGACATGAGCATCAATGA
CAAAGTTAATTTCATGAAATTAACTTTGTCATTGACATGAGCATCAATGA
CAAAGTTAATTTCATGAAATTAACTTTGTCATTGACATGAGCATCAATGA
CAAAGTTAATTTCATGAAATTAACTTTGTCATTGACATGAGCATCAATGA
CAAAGTTAATTTCATGAAATTAACTTTGTCATTGACATGAGCATCAATGA
CAAAGTTAATTTCATGAAACCTTAGAGTAAAAGCTGGCTCTAAGTGCTAG
CCTGGAGGCCACTTAGGCTTTTTTACGTAAAGTTACTATTTAAATGAAGT
AGTTTAAGTCTAAACAAACAGAAGGGACAAAAGCCGTCTCCCTTCCGTCT
CCCTTATTTATCTTAAGTAGAGAGGTTGGAAAGCCTTGGGAGAAAACGTA
TGCTAAAAATTATATAGCAGTGTTTCTATTCTATTAAGAAAAATATAAGT
TAAGTTTCAGTATAAGGGTAAGTGACCCTGCGGCAAAAACTTTCCTGAAG
GAAAAAAATCCTAGATAACTACAAAAACTTCCAATAACCTTATTTTCTTT
TACTTTTAACCAATAGGAATCGGTACGCGAGGGTCGTCATTCTGTGCAAT
TCTACATGAACCAATTATGTCGTCACTTGGATCCACAACTGCGTACCAAG
AGTCCATCAAAGAAACTCTTGAAAGGGTTGATATCAATCGAAAGTTTGTT
GACGTCACTCGAAGTTGATCTTCGTTCAAATCCAAATGCAACGTAAGCAT
AAAAAAATTCAAAATTTTCTTAAAAGTACTTCAACCAAATCATTTTTCGC
GTGATTTACTTTTTATGTACTCGAAGCCCTTCTATATAGCTATATAGTTA
TTTTTTCCTTGAAGTTTGGAATCCTCTAAAGGTAGCTCGTCGAAAACCCA
TGTTTTTGTTGGGTTTTTACTCCAACGGGGAACCTGTTAAAGCTTATAAT
TTTCTATGCAATAATTCTAAAGTGCAAAATATTTGTATATTTCAAATCAG
GAGGTTTCAAAGTCAGGGGTTTTGCTTTTTTTGGTAGGCTGGCGAATGAA
AAATTAACTCTGGTGGTTTCTAGATTCTAGCAAGCGCAGTGTATTGATTA
GCGTAAATATGTACTTGAGGCGGCAAACCAAACTTTTTGAATGGCGAATC
TTAATTTTTTTCATGCCTTGGTCCGGCGAAATTCATCGTTCGTCGGATCT
AAATAAGACCCCATCAAAGTGGAGGTACTTCGAAGCCTTCCGATTTCGGA
TATAGAATTTTTTTCTCACTTAGAAGTATCGCATAAAAACTATGAAATAA
TATAACTAGCGACTTCTCATTTTTAGGTGGTTACGAGAATTTATTGATGA
ACCGAATTGTGGACATGTTGTTTTGTTACGTTTCTTGAAATATCTCCAAG
ATCATTCATCTCCTGTTGCCATGGCAAATAGTCTGGAACGAGCTAACAAC
TATAAGAATAAGAAAACTGATGCTTTATTGTCCCGAGAGCCGGTGAGTCG
CAAGAATGCTTACGCTTCATACAACGTTGTTTGGACGTCATTGACGCTAT
ATAGTTGTCATGACCGTTATAATTGACGTCGTGAACGTTATACAGACGCC
ACAAACGTTGTATAGACATTGTTAGCGTTATATAGACGTCGTGAACGTTA
TACAGACGCCACAAACGTTATATAGATGTCATGAACGTTGTATAGACATT
GTGAGCGTTATATAGATGTCGTGAACGTTATACAGACGCCACAAATGTTA
CATAGACATCATGAACGTTTTATAGACGTCGTCATATAAAATGGACGGCA
TAAACGTTATAATGCAATTGAAACAATAACATGTTCAGCTTTTTATACCG
CAACGAATTCGGAAGCATTAGAGCCTATCATTAGAATTTTTTGATTCTTC
AATTTAAACAAAGATTTCTGAAACAGAACGTTGAAAGAACGTTGAAACAA
CACGACTGTCAGTTTTTAGCAAATGTTGCCTAGCACACGATGTTGTTTCA
ACGGCCATCTAACGTTCATAACATCCATATAACGTTAGATGAACGTTATA
ACAACGCTGTGAGTCAGCTGGGTTTGCTCATTTGGAAAGTGATATAAAAC
ACCCTTTATTCGAATATTTGTTAATTCGATAACTGTTGGTCCCTTGAAGA
TCGAATTAGAGAGGATCAAATGTATTTGAATCAATATACAACTACTCCTT
TTATTTTTCAGAACGACGAACATCTATGTCTTCTTTGCTTGAAAGCTATC
GTAAGAAATAAGGTACGATTTACTTCAAACCTAATTAACACCCCCTAATA
CCCGCTCCAGGGGGAGCCCTTCGACTATGACCGTTGATTGAAATTAGATT
TGTGAGAGTTTTATTTGTCCACAGTTTCCTACACTGATAGCGAACACTCT
TCATGATAGATAGCTATGGAGACATTCACTGGTCGTGTATGTCCTATTAT
AACCATTTTGTGAAGGATGTTAGGGAAAACCACTCTCTATTTTAAGACTT
CACCTTAAAGGAAAAAACAAAGTCGGGTAAAACTTAGTCGTTGGTAAAAC
TTTTCACCGTAGAAAATTCGTCACTTTTGTGAAAATCTTTGTCGTAGTCC
TCTTGAAGTTATAGTCTGAAGACTTCGTGAAGACGTATTTCGTCGGGGAA
AACTTAGCCACTTGCCTACAAAACTGTATCACTTCGTCGCAAGTTTTCGC
CTTAGAAGAACAGGTTTAATAAAGTTTAAATATAAATTTTTTCAATTTTT
CAGTATGGTTTTCATAAAGTATTAAGTGCACCACGTAGCCTAGCAACGAT
GACTTATTGCTTGAGGCTATCTAATGTCAAAACAAAAATCGCAGTCCTGA
GGGTAGGTATCTCATTTCTTCTTATTTCTTTAAATCAACTTGATCAGGAA
AAACATAGCCCTTCAAGTAGGAGCCCCCCCCTCCCTCAGATGAGTCTCTG
ATCACACCATCACCTAAAAGAATATAATCTGATATTCTGATGGCGGATTA
TGGCGTACTGTCGTATTGGCAGATTAACATCCAACCACGCTAAAGCTCTA
ATGGAGCGGACCCGAAAATCCCCAAAAACGAGAGCTGGGGTCCTCCAGCC
TCACACTGTGGAATCCTTGACCAGATTCCGTAATCTCCGGGGTGACTATA
AAAAAAGTAAAATCTCTACAACTCACTTGGATGAGAGCTTTTAATTATAT
TCGATTTTTTTACCGGGTTATCCACTGTCGCGGGGATCTTACCGGGTCAC
TGGTACAGGAGCCTCTTGTATAGAAGTTTAGCCAATCAAAGGGTATCTTA
TGATACCACGTTGTTTATTCTAACAATCAAATTCGTGATATAGTACCAGG
GAATCTGTTTTAACCANAAGTTTTCGCCTTAGAAGAACAAGTTTAATAAA
GTTTAAATATAAATTTTTTCAATTTTTCAGTATGGTTTTCATAAAGTATT
AAGTGCACCACGTAGCCTAGCAACGATGACTTATTGCTTGAGGCTATCTA
ATGTCAAAACAAAAATCGCAGTCCTGAGGGTAGGTATCTCATTTCTTCTT
ATTTCTTTAAATCAACTTGATCAGGAAAAACATAGCCCTTCAAGTAGGAC
CCCCCCCTCCCTCAGATGAGTCTCTGATCACACCATCACCTAAAAGAATA
TAATCTGATATTCTGATGGCGGATTATGGCGTATTGTCGTATTGGCGGAT
TGACATCCAACCACGCTAAAGCTCTAATGGAGCGGACCCGAAAATCCCCC
AAAACGAGAACTGGGGTCCTCCAGCCTCACACTGTAGAATCCTTGACCAG
ATTCCGTAATCTCCGGGGTGACTATAAAAAAAGTAAAATCTCTACAACTC
ACTTGGACGAGAGCTTCTAATTATATTCGATTTTTTTCACCGGGTTATCC
ACTGTCGCGGGGATCTGACCGGGTCACTGGTACAGGAGCCTCTTGTATAG
AAGTTTAGCCAATCAAAGCGTATCTTATGATACCACGTTGTTTATTCTAA
CGAATCAAATTCGTGATATAATACCAGGGAATCTGTTTTAACCAATCCAA
ATGTATCTTTATCCAGATTCTTTCCGAAGCATGTGATCACGGTGGGGGAT
TCGATAAAGCTTTACAAGCATTCGAAGATTACAAGCAAATCAAAAAAGAA
AGATATCGCTTCGAAAGTTTGGTTCATTCTGTTATATTGAAAGGAAAACA
AAGCACTCCAACTTATCAGGCTAGTTTTTCTTATATTTTGTAATCCATCC
TACATCTACTGCAAGCTTCTTCAACAGTATATACGCTTTTTATAAGAACT
TTTTGTAGCATTCGGGTTTTCTTAAACATTTGAATTTTAAGCCTAAAAAT
ATTTTTATTTTCTCTTTTTTGTCAGTAACTTTGTCCTAAAGCTGGAAATG
TTTACGAGAAGTGTGCCTTTATAAGAATAAATATTCAATTTGCTGAAGAA
AACTTCTATTTTGCTATATAATTTGTATATTTTAAAGAGTATCAAAATTT
CTTTATTATGACTGTTTGTCTTGGGGGTCACTCATATATCGATTTTCTCC
ACGATTAACGTCAAAATGACGCTAAGGCTAAGTCCAAGACCGTTAGTTGG
GGGTTAGTCGTGGGAAACATCGATATGTGAGCTACCCCTTGGGTATCTTT
GTTTGCAAATAGTCAAACGAACGTGGCCCATTTTTCGACCTCACTTTTTT
CATGGTTTTACATCATAGGAAGTTGTTGTACATTTCTTTAACGCACTATT
GAGTAATGCACCCTCATTGAATCAACGTGTTTTTCATCAACAAGAATTAG
AACAAGCTGGATTCACTGCTGAGAGAGTCGAACAGGTAGCTACATGTTCT
TAATATTCATGATGAAATTAGTCAAAAAAATCAAAAATATGCTAAGAATA
TCACCATCATAGACATAAGAATACCATATTTAGAGCACTTTTAAATTTAA
ATTACCAACTATCCCTAGAAAGACTTTCCCAATGACATCATGTTTTGCCT
CAAGTGGGTATTATACATGTAAAATTTTAATTTTGATTCTAACCTAAGAA
TACTGTAAGTGTGGATTATTTCTTTCCAAAAAGTTAAGAATACCTATGAT
AAAATAAAAACAAGAAGCCCAGAGGGCATGAAGGCCCAGCGAATAAAAAT
ATGAACTGAACAAGACTTGAGTAGCAGAGGGGATTTGAACCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTGTGTTTGAAAACGCGTATCGCCTAGTAAATTGTTACACACTGA
CACCGGGCAGAATGCTAATGAAAGGCCCAGTACGCTAAAGCTAGCTGGGC
CAAAAACATCATATAAAAAAAACGTGTAGTCTATATATTCCTTCTGTTAT
CTCGGCTAAAATTTTGAAAAACATGTAAACTCTACATTGCTTGTGCCTTC
TTAACTTTATAGACGCTGGAGGGATTGAGCTCAGAAGGTATTTATGACGA
GCTAAGCAAATGGAGGAATAACTATATTGATGTCTCAACAACACTTGATG
AATTCGTATCTATGAAATCCCGATCCACCATGCTTCGAGATGAGGTACGC
CAATTTGTTGTCATAGAAACCAAAATAACGTTCCTCAATATTGTGCAAAC
TCGAGCCCAATCCCTTAGTTCGCTTCTGATAGCACTTTATCAGTAAAATG
AAGAAAGCGTTAAACAAGTAGTCCAGAGTACTAAATTGGATATTGTTGGC
TCTCAAAATGTAAGCGTAATTGGAATTCTAGTTTTTACTATTTCAATTAA
ATTATCAACAATATTATATATTACTGATTTTGTTGATGGCTTATTTATCA
CTACCGTGGTTTTAAGCAAAAGTTTGTTAAGCCACTCACTCAACATTTGC
ATACTTCAATATTTTATCAAGAATTTTCTCTTTTTTGTTTTTTTTCCTAA
GAATTTACCCAATTTTTATTTCTAGGTTGATTTGCTGCAAGGAAAAGTCG
AGGTAAATTTCCAATTTTAAACTATGTGAATATCAACCAACCTGTACATA
ACCACAGAGAACGTCCATCTAGCATTCATAACGCGAGACTATATTAGATG
TCGCAGATTTTTTTCTGTAGACATTATCTATTATTCCACTTTAAGTCTTT
TTCCCAGGTTTTCGAATTTGCGTCAAAACATTTGAAAGCAAAATTTTGAC
GTGACGATACCGAAAGATATATAAATCACCTGCAAGGAACCCATGGGCGA
AATTTGAAACCCTCGGGGGCGCGAGAACCCGCGGGAAACCCCGATAAACC
TGCAGAAAGCGAGGGATCTCTGAAAAGAGAAACATAAACCCGAGGAGAAT
CGAGGGAACCCCAAAGTATTCAAGGAAAGTAGATCTAGTACTCTCGATGT
ATTTATAGAGTCTCTCTAGAGTCTATATTTTCTGCTGCCCTTGATTGGTA
TTCGTAATCATCTCGTCCGCATAAGAATGAAAAAATGAAAAAAGAAAAAA
GAGATCGGGTTGGAAAGCGCTGCAATTATCTTATGACATTTTGTTTTCGT
CATCTTCTTTGCAATCATCTTTAAATTTCCACTTTCTTCTTCCACAGCAA
TTCCAAAGGGAAAGAAACACATTACAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031427XLOC_031427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049553-exon-scaffold_160-1575043694:237125..237479TCONS_00049553-exon-scaffold_160-1575043694:237125..237479Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:231438..231613TCONS_00049553-exon-scaffold_160-1575043694:231438..231613Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:230688..230853TCONS_00049553-exon-scaffold_160-1575043694:230688..230853Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:229918..229968TCONS_00049553-exon-scaffold_160-1575043694:229918..229968Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:229328..229426TCONS_00049553-exon-scaffold_160-1575043694:229328..229426Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:227961..228113TCONS_00049553-exon-scaffold_160-1575043694:227961..228113Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:227345..227461TCONS_00049553-exon-scaffold_160-1575043694:227345..227461Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:226136..226267TCONS_00049553-exon-scaffold_160-1575043694:226136..226267Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:225728..225754TCONS_00049553-exon-scaffold_160-1575043694:225728..225754Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1575043694:225101..225132TCONS_00049553-exon-scaffold_160-1575043694:225101..225132Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:237125..237479TCONS_00049553-exon-scaffold_160-1510915933:237125..237479Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:231438..231613TCONS_00049553-exon-scaffold_160-1510915933:231438..231613Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:230688..230853TCONS_00049553-exon-scaffold_160-1510915933:230688..230853Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:229918..229968TCONS_00049553-exon-scaffold_160-1510915933:229918..229968Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:229328..229426TCONS_00049553-exon-scaffold_160-1510915933:229328..229426Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:227961..228113TCONS_00049553-exon-scaffold_160-1510915933:227961..228113Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:227345..227461TCONS_00049553-exon-scaffold_160-1510915933:227345..227461Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:226136..226267TCONS_00049553-exon-scaffold_160-1510915933:226136..226267Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:225728..225754TCONS_00049553-exon-scaffold_160-1510915933:225728..225754Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1510915933:225101..225132TCONS_00049553-exon-scaffold_160-1510915933:225101..225132Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:237125..237479TCONS_00049553-exon-scaffold_160-1491911889:237125..237479Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:231438..231613TCONS_00049553-exon-scaffold_160-1491911889:231438..231613Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:230688..230853TCONS_00049553-exon-scaffold_160-1491911889:230688..230853Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:229918..229968TCONS_00049553-exon-scaffold_160-1491911889:229918..229968Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:229328..229426TCONS_00049553-exon-scaffold_160-1491911889:229328..229426Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:227961..228113TCONS_00049553-exon-scaffold_160-1491911889:227961..228113Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:227345..227461TCONS_00049553-exon-scaffold_160-1491911889:227345..227461Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:226136..226267TCONS_00049553-exon-scaffold_160-1491911889:226136..226267Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:225728..225754TCONS_00049553-exon-scaffold_160-1491911889:225728..225754Clytia hemisphaericaexon
TCONS_00049553-exon-scaffold_160-1491911889:225101..225132TCONS_00049553-exon-scaffold_160-1491911889:225101..225132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:225101..237479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.137136	0.246462	0.664074	0.048818	1.34449	1.11986	0	0.108316	0.100124	0.250433	2.47484	3.48916	0.202465	0	0.126253	0.177541	0.0953975	0.357761	0.128364	0	0	0
Blast
[Close]
BLAST of TCONS_00049553 vs. Swiss-Prot (Human)
Match: FMNL3 (Formin-like protein 3 OS=Homo sapiens GN=FMNL3 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 2.374e-22
Identity = 91/351 (25.93%), Postives = 159/351 (45.30%), Query Frame = 2 
Query:  284 LRRFEGNKKEDIMLKALKFKSNKKESVREGRHSVQFYMNQLCRHLDPQLRTKSPSKKLLKGXXXXXXXXXXXXVDLRSNPNATWLREFIDEPNCGHVVLLRFLKYLQ-----------------------------DHSSPVAMA----NSLERANNYKNKKTDALLSR----------EPNDEHLCLLCLKAIVRNKYGFHKVLSAPRSLATMTYCLRLSNVKTKIAVLRILSEACDHGGGFDKALQAFEDYKQIKKERYRFESLVHSVILKGKQSTPTYQEVVVHFFNALLSNAPSLNQRVFHQQELEQAGFTAERVEQTLEGLSSEGIYDELSKWRNNYIDVSTTLDE 1207
            LR+++  KK D++    +F+      V+   H+   Y+ +L   LDP +      KK  + +     +L  LE+ LR+N +  W+REF+++ N G  VL+ +L + Q                             D   P A++    NSL R+      +   L  R          + +D H+C+LCL+AI+  +YGF+ V+S P ++  +   L   N +TK  VL +L+  C   GG +  L AF+++K++ KE +RFE L+     + + S   +    + F N ++ +   +N RV  Q E  + G   E   Q      SE +  ++  + +N  DV   L++
Sbjct:   55 LRQYDNEKKWDLICDQERFQ------VKNPPHT---YIQKLQSFLDPSV----TRKKFRRRVQESTKVLRELEISLRTN-HIGWVREFLNDENKGLDVLVDYLSFAQCSVMFDFEGLESGDDGAFDKLRSWSRSIEDLQPPSALSAPFTNSLARSARQSVLRYSTLPGRRALKNSRLVSQKDDVHVCILCLRAIMNYQYGFNLVMSHPHAVNEIALSLNNKNPRTKALVLELLAAVCLVRGGHEIILAAFDNFKEVCKELHRFEKLME--YFRNEDSNIDFMVACMQFINIVVHSVEDMNFRVHLQYEFTKLGL--EEFLQKSRHTESEKLQVQIQAYLDNVFDVGGLLED 387
The following BLAST results are available for this feature:
BLAST of TCONS_00049553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMNL32.374e-2225.93Formin-like protein 3 OS=Homo sapiens GN=FMNL3 PE=... [more]
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