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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049562 ID=TCONS_00049562|Name=TCONS_00049562|organism=Clytia hemisphaerica|type=transcript|length=1144bp
NNTTTCGGATTGATTGCCACTTGATCGCACACCGTATATCAACGTCTTTA
TCACTTTCTCTTCAGGTGGCTGGTTGATGTCGAGTGTGTCGTGCCATAAG
TATCGTTGGTAGCACCAGTGATCAGAACGTAGCTTGACGGAATTATACAT
TTTGGTAACATCGGTATGGAAGGCGGATCTGTGAGTGTACCACCTGATGA
GGATTTCCACCAATTTGTTCATTCCGTTGGTTCCTTTGGCGAGGATTGAC
TTTAAGCTATATCAACTACTTGTTGGCTGTGATGCATCGAACACAATTCT
GCATGGCGTTGTTAGCGAGCTGAGTTTCCATACAGCCCGCCATGGAATGT
AGTGTGTAATGGATAGCGTTTGATGACAGTTGATCTTGCTGGTCCTTTGG
AAGATTATTGACGTAATCAACGTGTCCAAGTCTTTGAAGCTTACTTTCGG
ATTGTAGTACATCTGACTTGTCCTCTGGATGACGATTAAGCTTTGAAACT
TGTTGATTGTAGACNTTTGAAGCTTACGTTCGGATTCTAATACATCTGAC
TTGTCCTCTGGATGACGATTAAGCTTTGAAACTTGTTGATTGTAGACTTT
CAGTGCCCTAGAACGGTTGGGCACCAAACGAGTGATGGGATCTTGGATGA
ATGGAAGTGTTGCGATCGTCACTTGCTCGTCTGATTTTACGATGATTGAT
TTATTGATGAGTTCTTGTTCGACCTCTTCACGAATGCTTGTTGCCTCTAT
TGATCCATTGGACTTACAATCGACACAAGAACGACATTTGGTGCAACGAT
AGGTAACTTCACTGCCGGCACTTTCAGCAACATCGAACGTTGATTGTTGG
CCAGGATACGAGTTGTTGGAGACTTGGTAGGTGCGAGTTGTGCACAGAAG
TGGAACGTCTGGGTTGAGTTGGTAACCAGTTTGATAAAGTCTGaattgtt
tagaaatgaaatcACTCTTACCAGTCCTGTGGAATTCATTGTTGATCATG
GTGAACAATTGATGAGGACCACCAATAACTCCACGACTGTCACATGAGCT
GCGAAATATGGATTGGTAAATTGTTAATCCTGAAGGCATCTGGAACACGA
ACTTTGGGAAATAACGGAGGTATCTGATTCCAATCATTAAATCN Run BLAST on NCBI protein sequence of TCONS_00049562-protein >TCONS_00049562-protein ID=TCONS_00049562-protein|Name=TCONS_00049562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
DLMIGIRYLRYFPKFVFQMPSGLTIYQSIFRSSCDSRGVIGGPHQLFTMI
NNEFHRTGKSDFISKQFRLYQTGYQLNPDVPLLCTTRTYQVSNNSYPGQQ
STFDVAESAGSEVTYRCTKCRSCVDCKSNGSIEATSIREEVEQELINKSI
IVKSDEQVTIATLPFIQDPITRLVPNRSRALKVYNQQVSKLNRHPEDKSD
VLESERKLQXSTINKFQSLIVIQRTSQMYYNPKVSFKDLDTLITSIIFQR
TSKINCHQTLSITHYIPWRAVWKLSSLTTPCRIVFDASQPTSS Run BLAST on NCBI transcript from alignment at scaffold_160:259571..260714 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049562 ID=TCONS_00049562|Name=TCONS_00049562|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_160:259571..260714 (Clytia hemisphaerica)
NGATTTAATGATTGGAATCAGATACCTCCGTTATTTCCCAAAGTTCGTGT
TCCAGATGCCTTCAGGATTAACAATTTACCAATCCATATTTCGCAGCTCA
TGTGACAGTCGTGGAGTTATTGGTGGTCCTCATCAATTGTTCACCATGAT
CAACAATGAATTCCACAGGACTGGTAAGAGTgatttcatttctaaacaat
tCAGACTTTATCAAACTGGTTACCAACTCAACCCAGACGTTCCACTTCTG
TGCACAACTCGCACCTACCAAGTCTCCAACAACTCGTATCCTGGCCAACA
ATCAACGTTCGATGTTGCTGAAAGTGCCGGCAGTGAAGTTACCTATCGTT
GCACCAAATGTCGTTCTTGTGTCGATTGTAAGTCCAATGGATCAATAGAG
GCAACAAGCATTCGTGAAGAGGTCGAACAAGAACTCATCAATAAATCAAT
CATCGTAAAATCAGACGAGCAAGTGACGATCGCAACACTTCCATTCATCC
AAGATCCCATCACTCGTTTGGTGCCCAACCGTTCTAGGGCACTGAAAGTC
TACAATCAACAAGTTTCAAAGCTTAATCGTCATCCAGAGGACAAGTCAGA
TGTATTAGAATCCGAACGTAAGCTTCAAANGTCTACAATCAACAAGTTTC
AAAGCTTAATCGTCATCCAGAGGACAAGTCAGATGTACTACAATCCGAAA
GTAAGCTTCAAAGACTTGGACACGTTGATTACGTCAATAATCTTCCAAAG
GACCAGCAAGATCAACTGTCATCAAACGCTATCCATTACACACTACATTC
CATGGCGGGCTGTATGGAAACTCAGCTCGCTAACAACGCCATGCAGAATT
GTGTTCGATGCATCACAGCCAACAAGTAGTTGATATAGCTTAAAGTCAAT
CCTCGCCAAAGGAACCAACGGAATGAACAAATTGGTGGAAATCCTCATCA
GGTGGTACACTCACAGATCCGCCTTCCATACCGATGTTACCAAAATGTAT
AATTCCGTCAAGCTACGTTCTGATCACTGGTGCTACCAACGATACTTATG
GCACGACACACTCGACATCAACCAGCCACCTGAAGAGAAAGTGATAAAGA
CGTTGATATACGGTGTGCGATCAAGTGGCAATCAATCCGAAANN Coding sequence (CDS) from alignment at scaffold_160:259571..260714 >TCONS_00049562 ID=TCONS_00049562|Name=TCONS_00049562|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_160:259571..260714 (Clytia hemisphaerica)
GATTTAATGATTGGAATCAGATACCTCCGTTATTTCCCAAAGTTCGTGTT
CCAGATGCCTTCAGGATTAACAATTTACCAATCCATATTTCGCAGCTCAT
GTGACAGTCGTGGAGTTATTGGTGGTCCTCATCAATTGTTCACCATGATC
AACAATGAATTCCACAGGACTGGTAAGAGTgatttcatttctaaacaatt
CAGACTTTATCAAACTGGTTACCAACTCAACCCAGACGTTCCACTTCTGT
GCACAACTCGCACCTACCAAGTCTCCAACAACTCGTATCCTGGCCAACAA
TCAACGTTCGATGTTGCTGAAAGTGCCGGCAGTGAAGTTACCTATCGTTG
CACCAAATGTCGTTCTTGTGTCGATTGTAAGTCCAATGGATCAATAGAGG
CAACAAGCATTCGTGAAGAGGTCGAACAAGAACTCATCAATAAATCAATC
ATCGTAAAATCAGACGAGCAAGTGACGATCGCAACACTTCCATTCATCCA
AGATCCCATCACTCGTTTGGTGCCCAACCGTTCTAGGGCACTGAAAGTCT
ACAATCAACAAGTTTCAAAGCTTAATCGTCATCCAGAGGACAAGTCAGAT
GTATTAGAATCCGAACGTAAGCTTCAAANGTCTACAATCAACAAGTTTCA
AAGCTTAATCGTCATCCAGAGGACAAGTCAGATGTACTACAATCCGAAAG
TAAGCTTCAAAGACTTGGACACGTTGATTACGTCAATAATCTTCCAAAGG
ACCAGCAAGATCAACTGTCATCAAACGCTATCCATTACACACTACATTCC
ATGGCGGGCTGTATGGAAACTCAGCTCGCTAACAACGCCATGCAGAATTG
TGTTCGATGCATCACAGCCAACAAGTAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049562-exon-scaffold_160-1491911889:259571..260714 | TCONS_00049562-exon-scaffold_160-1491911889:259571..260714 | Clytia hemisphaerica | exon |
| TCONS_00049562-exon-scaffold_160-1510915933:259571..260714 | TCONS_00049562-exon-scaffold_160-1510915933:259571..260714 | Clytia hemisphaerica | exon |
| TCONS_00049562-exon-scaffold_160-1575043694:259571..260714 | TCONS_00049562-exon-scaffold_160-1575043694:259571..260714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:259571..260714 . |
Blast
The following BLAST results are available for this feature:
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