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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049570 ID=TCONS_00049570|Name=TCONS_00049570|organism=Clytia hemisphaerica|type=transcript|length=872bp
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGTAACATCTCTGAACACTTATTCCTTCGAAT
TGCATTCTGAtcaaaaaattggtgaaaagaTCATTCGATGTCTCTTTATT
CGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTCTCACAAAGATA
TTATCCACTTGTACGTGAATATGATTTTGCTCTATATGGCATCAAATTCg
aaagAGATTTGAGCAATTATATGGACCATAATTATGAAATTGAAGTGATC
GTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAACCACGTGCCCG
GACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAGCGGTCGTGAAT
TTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTAACATCACAGAC
TGATTTTTTGCGTCCCAAGAACTCTTTTGAAAAGTTCGGAAAAACCGAAG
GGAAAATTTACTCTCAGAAATACACAAATTTCctatatacatgttttttt
ttatacaaaaatccgaaaacag Run BLAST on NCBI protein sequence of TCONS_00049570-protein >TCONS_00049570-protein ID=TCONS_00049570-protein|Name=TCONS_00049570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MDWQVFGIIWFSLLTMVTSLNTYSFELHSDQKIGEKIIRCLFIRLSDETT
GQTHDFSQRYYPLVREYDFALYGIKFERDLSNYMDHNYEIEVIVNHDWCS
FENGGQPRARTGDLKGTNLKRISGREFYYTMTVDIKAVVNITD Run BLAST on NCBI transcript from alignment at scaffold_161:136169..138600+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049570 ID=TCONS_00049570|Name=TCONS_00049570|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at scaffold_161:136169..138600+ (Clytia hemisphaerica)
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGGTGAGTACCTTAACGCAAAacggatttttc
attttttttcgggattttcTAATTCTTGtcatgaaaaaaggaaaattatt
aaatatcTTCATTAAGTATCTTTGCGGGGAAATCACTCAGTTATTTCAAT
TCAACCTCGTATTTGATATCGTTTATATCTTTTTTCACCATAGTAACATC
TCTGAACACTTATTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaa
agaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAA
ACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTT
TGCTCTATATGGCATCAAATTCgaaaggtattttttttttaaaattaccT
GACTATGGCCCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAA
AACTTTGTCAGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAAC
TAAATTTCTAcgagaaaaaactatataagaacacaaggctacGATAGCTA
AAATATTAAGGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGT
TCTGGAATCcgtttcagaattttcaaagtAAGCTAttcttatattgttgt
ttcttttaaactagtgttttttttctaaaataagcACCGcggtttaaatt
tatttttcgctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGA
CCCATTTTTATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcac
attttcctttaaaatattTGCAGAGATTTGAGCAATTATATGGACCATAA
TTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATG
GCGGACAACCANaattttttttcggacactttggtgtgattttcggacaa
atatgacggtctcaggcaaaaatcatagggttaaaaattaatgaaaattt
tagctcgagaaaaaaagacctgttgtatatttttggaaagctctcaaaaa
attaagattagagatatattgcaagtatagttGATTTCTGTACcttactc
gagatattaacccttgaaaaccgtttttttcagccagaaacagctatttt
gtccagtttttgcgctttttgaagctcaatatctcgagttaggtactgaa
atcacctatacttgcaatatatctctaatccNTACCGGACAAACACATGA
CTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTTTGCTCTAT
ATGGCATCAAATTCgaaaggtattttttttttaaattacctgACTGTGGC
CCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAAAACTTTGTC
AGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAACTAAATTTCT
AcgagaaaaaactatataagaacacaaggctacGATAGCTAAAATATTAA
GGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGTTCTGGAATC
cgtttcagaattttcaaagtAAGCTAttcttatattgttgtttcttttaa
actagtgttttttttctaaaataagcACCGcggtttaaatttatttttcg
ctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGACCCATTTTT
ATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcacattttcctt
taaaatattTGCAGAGATTTGAGCAATTATATGGACCATAATTATGAAAT
TGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAAC
CACGTGCCCGGACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAGC
GGTCGTGAATTTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTAA
CATCACAGACTGATTTTTTGCGTCCCAAGAACTCTTTTGAAAAGTTCGGA
AAAACCGAAGGGAAAATTTACTCTCAGAAATACACAAATTTCctatatac
atgtttttttttatacaaaaatccgaaaacag Coding sequence (CDS) from alignment at scaffold_161:136169..138600+ >TCONS_00049570 ID=TCONS_00049570|Name=TCONS_00049570|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_161:136169..138600+ (Clytia hemisphaerica)
ATGGATTGGCAGGTGTTTGGTATAATTTGGTTCAGTTTGCTAACGATGGT
AACATCTCTGAACACTTATTCCTTCGAATTGCATTCTGAtcaaaaaattg
gtgaaaagaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACC
GGACAAACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATA
TGATTTTGCTCTATATGGCATCAAATTCgaaagAGATTTGAGCAATTATA
TGGACCATAATTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGT
TTTGAAAATGGCGGACAACCACGTGCCCGGACAGGTGATTTGAAAGGAAC
AAACCTTAAACGAATCAGCGGTCGTGAATTTTATTATACGATGACTGTTG
ATATTAAAGCTGTTGTTAACATCACAGACTGAATGGATTGGCAGGTGTTT
GGTATAATTTGGTTCAGTTTGCTAACGATGGTAACATCTCTGAACACTTA
TTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaaagaTCATTCGAT
GTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTC
TCACAAAGATATTATCCACTTGTACGTGAATATGATTTTGCTCTATATGG
CATCAAATTCgaaagAGATTTGAGCAATTATATGGACCATAATTATGAAA
TTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAA
CCACGTGCCCGGACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAG
CGGTCGTGAATTTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTA
ACATCACAGACTGAATGGATTGGCAGGTGTTTGGTATAATTTGGTTCAGT
TTGCTAACGATGGTAACATCTCTGAACACTTATTCCTTCGAATTGCATTC
TGAtcaaaaaattggtgaaaagaTCATTCGATGTCTCTTTATTCGTCTGT
CGGACGAAACTACCGGACAAACGCATGACTTCTCACAAAGATATTATCCA
CTTGTACGTGAATATGATTTTGCTCTATATGGCATCAAATTCgaaagAGA
TTTGAGCAATTATATGGACCATAATTATGAAATTGAAGTGATCGTCAATC
ATGACTGGTGTAGTTTTGAAAATGGCGGACAACCACGTGCCCGGACAGGT
GATTTGAAAGGAACAAACCTTAAACGAATCAGCGGTCGTGAATTTTATTA
TACGATGACTGTTGATATTAAAGCTGTTGTTAACATCACAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049570-exon-scaffold_161-1491911889:136169..136538 | TCONS_00049570-exon-scaffold_161-1491911889:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1510915933:136169..136538 | TCONS_00049570-exon-scaffold_161-1510915933:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1575043694:136169..136538 | TCONS_00049570-exon-scaffold_161-1575043694:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1491911889:136712..136895 | TCONS_00049570-exon-scaffold_161-1491911889:136712..136895 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1510915933:136712..136895 | TCONS_00049570-exon-scaffold_161-1510915933:136712..136895 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1575043694:136712..136895 | TCONS_00049570-exon-scaffold_161-1575043694:136712..136895 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1491911889:138283..138600 | TCONS_00049570-exon-scaffold_161-1491911889:138283..138600 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1510915933:138283..138600 | TCONS_00049570-exon-scaffold_161-1510915933:138283..138600 | Clytia hemisphaerica | exon |
| TCONS_00049570-exon-scaffold_161-1575043694:138283..138600 | TCONS_00049570-exon-scaffold_161-1575043694:138283..138600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:136169..138600 + |
Blast
The following BLAST results are available for this feature:
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