TCONS_00049631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049631
Unique NameTCONS_00049631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049631 ID=TCONS_00049631|Name=TCONS_00049631|organism=Clytia hemisphaerica|type=transcript|length=596bp
AACCGACCCAGCTCAATCATTCAAATCTTTACTTGCTTTCCTAGGTATCT
TTTATTTCGAATGAGATTGTTGTGTGTTTGTATGGTTCTTTACTTTAGGG
CACTGGGTCTGTGGGTCCCTTTTATTTTTAGTCCCCTTGACATGTGAGTA
AAAGTGCAATTTGTGTTAAAACACTCACCTTTTCTGATCGATGAAGAACA
CATACGTGGATGAAACATGTTGCATTTTGTGCCAGCATTACAGCCTTTTG
GGGATTTATTACCATGTCTCAGTAACTTGGTACAGATTTTTGGATGCTTG
AATCGGCAATCTTTGCCTGTGATGCCATATATTTACATTTTCCTATTTTG
TAAAAGTTACAAACTGGAGTTTCATCAGAGACTTTGTCCTTGGTTGTAGT
ATTTTCCAAAGATAGGGTTGCGTCGTTTTGTAAATCGCgtttgaaattta
gattttaggaAATTAGTCCTACCCCCCCAGATATATATTCCATCACAACA
ATCTTATTTGAGGGTCTGTCGATAATAATATCTGGGGTGATTGGAATGTG
AGGGAGTGTCCTTCTTGGAGTGGGTTGTCCTTCTTGGAGTGGGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_162:50199..50794

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049631 ID=TCONS_00049631|Name=TCONS_00049631|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at scaffold_162:50199..50794 (Clytia hemisphaerica)
CAACCCACTCCAAGAAGGACAACCCACTCCAAGAAGGACACTCCCTCACA
TTCCAATCACCCCAGATATTATTATCGACAGACCCTCAAATAAGATTGTT
GTGATGGAATATATATCTGGGGGGGTAGGACTAATTtcctaaaatctaaa
tttcaaacGCGATTTACAAAACGACGCAACCCTATCTTTGGAAAATACTA
CAACCAAGGACAAAGTCTCTGATGAAACTCCAGTTTGTAACTTTTACAAA
ATAGGAAAATGTAAATATATGGCATCACAGGCAAAGATTGCCGATTCAAG
CATCCAAAAATCTGTACCAAGTTACTGAGACATGGTAATAAATCCCCAAA
AGGCTGTAATGCTGGCACAAAATGCAACATGTTTCATCCACGTATGTGTT
CTTCATCGATCAGAAAAGGTGAGTGTTTTAACACAAATTGCACTTTTACT
CACATGTCAAGGGGACTAAAAATAAAAGGGACCCACAGACCCAGTGCCCT
AAAGTAAAGAACCATACAAACACACAACAATCTCATTCGAAATAAAAGAT
ACCTAGGAAAGCAAGTAAAGATTTGAATGATTGAGCTGGGTCGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031469XLOC_031469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049631-exon-scaffold_162-1491911889:50199..50794TCONS_00049631-exon-scaffold_162-1491911889:50199..50794Clytia hemisphaericaexon
TCONS_00049631-exon-scaffold_162-1510915933:50199..50794TCONS_00049631-exon-scaffold_162-1510915933:50199..50794Clytia hemisphaericaexon
TCONS_00049631-exon-scaffold_162-1575043694:50199..50794TCONS_00049631-exon-scaffold_162-1575043694:50199..50794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:50199..50794 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11331	1.22511	1.43986	1.7365	2.43385	2.30077	3.39905	4.63725	3.82377	1.59705	1.9369	3.17848	0.914071	1.7957	1.46582	1.34285	1.2203	1.7084	1.87357	1.51715	1.3033	0	0.161474	0.538923	2.86586	3.32463	0.817027	0.572233	0.752648	1.14231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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