TCONS_00049633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049633
Unique NameTCONS_00049633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049633 ID=TCONS_00049633|Name=TCONS_00049633|organism=Clytia hemisphaerica|type=transcript|length=547bp
GGagattcattttttgttgaattttttttttactccgtgaaaagtttgaa
tttcttctttttttcttcagatgttTGGGAAATTTTGGGCGAaaagaaat
tcgcgaaattcgaagaaattttCCACCAAAAACCGAACATCGTCAACTCA
TTGCGTGATGGTTTTCGTGGTCGGACACTTCTCATGGAGGCTGTTTATAA
TGATCGTTTCGACGTTTTCGTTCACTTGATGAATTATCCTCAAGATTTTT
CACTCGTGGACAATTATGGTCGGAACGTTCTTCATTATGTTGGTGATTAT
GGAAAAGTTCGTTATTTGGAACAATTTGAtcaacaaacaatcaaaatgtt
gATCGATGGAAGAGACAATGAGAACAACACACCGTTGCATCTTGCAGCAT
GGAACaacaatcatgacgtcatcgaaTGGTTGTTGGCCAAAGGAGCGaat
catgaaatgaaaaacaaatatggtCGACGCCCTGGTGAACATCATAATTG
TGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTCTtggt
Run BLAST on NCBI

protein sequence of TCONS_00049633-protein

>TCONS_00049633-protein ID=TCONS_00049633-protein|Name=TCONS_00049633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
GDSFFVEFFFYSVKSLNFFFFSSDVWEILGEKKFAKFEEIFHQKPNIVNS
LRDGFRGRTLLMEAVYNDRFDVFVHLMNYPQDFSLVDNYGRNVLHYVGDY
GKVRYLEQFDQQTIKMLIDGRDNENNTPLHLAAWNNNHDVIEWLLAKGAN
HEMKNKYGRRPGEHHNCDGVTKEIFRSFRSSW
Run BLAST on NCBI

transcript from alignment at scaffold_162:87056..87602

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049633 ID=TCONS_00049633|Name=TCONS_00049633|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_162:87056..87602 (Clytia hemisphaerica)
accaAGACGAACGAAACGATCGAAAGATTTCTTTGGTAACACCATCACAA
TTATGATGTTCACCAGGGCGTCGaccatatttgtttttcatttcatgatt
CGCTCCTTTGGCCAACAACCAttcgatgacgtcatgattgttGTTCCATG
CTGCAAGATGCAACGGTGTGTTGTTCTCATTGTCTCTTCCATCGATcaac
attttgattgtttgttgaTCAAATTGTTCCAAATAACGAACTTTTCCATA
ATCACCAACATAATGAAGAACGTTCCGACCATAATTGTCCACGAGTGAAA
AATCTTGAGGATAATTCATCAAGTGAACGAAAACGTCGAAACGATCATTA
TAAACAGCCTCCATGAGAAGTGTCCGACCACGAAAACCATCACGCAATGA
GTTGACGATGTTCGGTTTTTGGTGGaaaatttcttcgaatttcgcgaatt
tctttTCGCCCAAAATTTCCCAaacatctgaagaaaaaaagaagaaattc
aaacttttcacggagtaaaaaaaaaattcaacaaaaaatgaatctCC

Coding sequence (CDS) from alignment at scaffold_162:87056..87602

>TCONS_00049633 ID=TCONS_00049633|Name=TCONS_00049633|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_162:87056..87602 (Clytia hemisphaerica)
ccaAGACGAACGAAACGATCGAAAGATTTCTTTGGTAACACCATCACAAT
TATGATGTTCACCAGGGCGTCGaccatatttgtttttcatttcatgattC
GCTCCTTTGGCCAACAACCAttcgatgacgtcatgattgttGTTCCATGC
TGCAAGATGCAACGGTGTGTTGTTCTCATTGTCTCTTCCATCGATcaaca
ttttgattgtttgttgaTCAAATTGTTCCAAATAACGAACTTTTCCATAA
TCACCAACATAATGAAGAACGTTCCGACCATAATTGTCCACGAGTGAAAA
ATCTTGAGGATAATTCATCAAGTGAACGAAAACGTCGAAACGATCATTAT
AAACAGCCTCCATGAGAAGTGTCCGACCACGAAAACCATCACGCAATGAG
TTGACGATGTTCGGTTTTTGGTGGaaaatttcttcgaatttcgcgaattt
ctttTCGCCCAAAATTTCCCAaacatctgaagaaaaaaagaagaaattca
aacttttcacggagtaaaaaaaaaattcaacaaaaaatgaatctCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031471XLOC_031471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049633-exon-scaffold_162-1491911889:87056..87602TCONS_00049633-exon-scaffold_162-1491911889:87056..87602Clytia hemisphaericaexon
TCONS_00049633-exon-scaffold_162-1510915933:87056..87602TCONS_00049633-exon-scaffold_162-1510915933:87056..87602Clytia hemisphaericaexon
TCONS_00049633-exon-scaffold_162-1575043694:87056..87602TCONS_00049633-exon-scaffold_162-1575043694:87056..87602Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049633-proteinTCONS_00049633-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:87056..87602 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339084	0.509063	0.261429	0	0.871325	0.447417	1.2297	1.04185	0.626949	1.72589	0.99735	0.288696	3.02561	2.49898	3.84532	7.60851	3.91132	5.01883	6.44598	5.73072	3.48393	3.39591	3.09962	3.29613	2.91869	3.04363	10.028	10.3475	12.6365	11.6915
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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