TCONS_00049635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049635
Unique NameTCONS_00049635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049635 ID=TCONS_00049635|Name=TCONS_00049635|organism=Clytia hemisphaerica|type=transcript|length=620bp
CAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTTGTTTATACATT
CAAGCAtcgtcatttttttctataGCACAGAAACTAAACCTTACCTGTCT
TCATGAAAAAGACTGTTTAGATGTTAGTTTTGGACGTACTGTATGGAGGG
AGCCTTTTACACTCCGGGACTGAATTTTGATTGTAGCCCTGTTATTGAAG
AGAACGTACTGGCTTTTTCGGATCGCGTTCACATTGTAAATGGTGAAGTA
TGTGCATGTAGGCAGATAAATTAGCAACTAGGTTCTTTAATACCCAATTA
CGCAAGCCTAACTGTGCGATGGCTGGTTGTGCCTCGTCGCCAATTGTCTC
AAAATTAGAGAAGAAAGGAGGTAAGCAGAATCTTGAGCAAACTTTTACCT
GTCCCAAAGCCATTTCTGTCTAGGGTAAAGGGAGGCAACACTCCTTCTta
cagccccactgggaatcctccccactggaaaaaatagccaaaattttgtc
cccactgaaaatagaTCACCGCAaattattgtgctattttttccaactga
attttctgctcaaaaacaatagaattcaaatccTCAGTCATGAGCAAAAT
GGGAATAttaatccccattg
Run BLAST on NCBI

transcript from alignment at scaffold_162:97722..98341

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049635 ID=TCONS_00049635|Name=TCONS_00049635|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at scaffold_162:97722..98341 (Clytia hemisphaerica)
caatggggattaaTATTCCCATTTTGCTCATGACTGAggatttgaattct
attgtttttgagcagaaaattcagttggaaaaaatagcacaataattTGC
GGTGAtctattttcagtggggacaaaattttggctattttttccagtggg
gaggattcccagtggggctgtaAGAAGGAGTGTTGCCTCCCTTTACCCTA
GACAGAAATGGCTTTGGGACAGGTAAAAGTTTGCTCAAGATTCTGCTTAC
CTCCTTTCTTCTCTAATTTTGAGACAATTGGCGACGAGGCACAACCAGCC
ATCGCACAGTTAGGCTTGCGTAATTGGGTATTAAAGAACCTAGTTGCTAA
TTTATCTGCCTACATGCACATACTTCACCATTTACAATGTGAACGCGATC
CGAAAAAGCCAGTACGTTCTCTTCAATAACAGGGCTACAATCAAAATTCA
GTCCCGGAGTGTAAAAGGCTCCCTCCATACAGTACGTCCAAAACTAACAT
CTAAACAGTCTTTTTCATGAAGACAGGTAAGGTTTAGTTTCTGTGCtata
gaaaaaaatgacgaTGCTTGAATGTATAAACAACACTCTTCCCGCCAATC
AAAAGGTAAAGGAGCCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031473XLOC_031473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049635-exon-scaffold_162-1491911889:97722..98341TCONS_00049635-exon-scaffold_162-1491911889:97722..98341Clytia hemisphaericaexon
TCONS_00049635-exon-scaffold_162-1510915933:97722..98341TCONS_00049635-exon-scaffold_162-1510915933:97722..98341Clytia hemisphaericaexon
TCONS_00049635-exon-scaffold_162-1575043694:97722..98341TCONS_00049635-exon-scaffold_162-1575043694:97722..98341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:97722..98341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.201463	0.090101	0	0.114978	2.09109	1.84943	0.70617	0.864129	0.777606	1.94825	4.36869	2.98274	0.50136	0.244252	0.446924	0.72932	0.221728	0.138927	4.11009	3.05053	7.10718	6.06317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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