TCONS_00049663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049663
Unique NameTCONS_00049663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049663 ID=TCONS_00049663|Name=TCONS_00049663|organism=Clytia hemisphaerica|type=transcript|length=396bp
GCCGATTAGTgaatataaattcaaaaaaacgaacCTTTTGCCTCGCAAAA
TTACAGCTTacgaaaattaatccatttAAAGTATGCTGAGATGAAAACGA
AACAAAATATTGAATTAAAAGTTGGGATTACGACGGCAGGTTACGGTAAC
AAATCAAGGACCATCATCCGTACCTTATTGTGATTTACCATCTTATGGGA
CTAGCGTATAGATGGATTTCCATGAAAATTTTTGAGTGAAAAATTTTGCC
GAATTCGCCAAATTTGTAAGGCAAGAAGTCTTCCCTTAACAAAATGGAAA
GTTTTATCGAAATATAGTACTAGATGTTTTTGACTGGAGAGATTCAatca
tatataatatatactTTCATAGGGATAGAACACTAAAAACGCGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_164:4751..5146

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049663 ID=TCONS_00049663|Name=TCONS_00049663|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at scaffold_164:4751..5146 (Clytia hemisphaerica)
TTACGCGTTTTTAGTGTTCTATCCCTATGAAagtatatattatatatgat
TGAATCTCTCCAGTCAAAAACATCTAGTACTATATTTCGATAAAACTTTC
CATTTTGTTAAGGGAAGACTTCTTGCCTTACAAATTTGGCGAATTCGGCA
AAATTTTTCACTCAAAAATTTTCATGGAAATCCATCTATACGCTAGTCCC
ATAAGATGGTAAATCACAATAAGGTACGGATGATGGTCCTTGATTTGTTA
CCGTAACCTGCCGTCGTAATCCCAACTTTTAATTCAATATTTTGTTTCGT
TTTCATCTCAGCATACTTTaaatggattaattttcgtAAGCTGTAATTTT
GCGAGGCAAAAGgttcgtttttttgaatttatattcACTAATCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031485XLOC_031485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049663-exon-scaffold_164-1491911889:4751..5146TCONS_00049663-exon-scaffold_164-1491911889:4751..5146Clytia hemisphaericaexon
TCONS_00049663-exon-scaffold_164-1510915933:4751..5146TCONS_00049663-exon-scaffold_164-1510915933:4751..5146Clytia hemisphaericaexon
TCONS_00049663-exon-scaffold_164-1575043694:4751..5146TCONS_00049663-exon-scaffold_164-1575043694:4751..5146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:4751..5146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.973814	1.38059	2.42476	0	4.81804	4.20973	5.54771	4.33867	3.46415	4.5162	1.76744	2.26197	1.60864	0.543173	2.2883	2.37712	2.15285	2.7667	2.28064	1.78841	3.72278	2.40262	1.61553	2.14868	0	2.86571	2.51859	2.00459	1.80184	1.12799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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