TCONS_00049664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049664
Unique NameTCONS_00049664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049664 ID=TCONS_00049664|Name=TCONS_00049664|organism=Clytia hemisphaerica|type=transcript|length=389bp
AGAGCATTTAATTTTTGTAGAacgttatttttttcaaggagATAAAAAAA
GCATTACTAATACATACGATGGAATAATTACAAGTAATACTAATAACTGT
AAAATGAAAGATCTATGTTCTACAAAGtaaaattatttcttaaaaaaaaa
ctcctATAGCTCTATTACAATAAACATTGCcttacattcttataaaaacg
tacCTATTGGAAACACCTGAAAAGACGGAAATTGACCCATGTGCTGTTAT
TTCTATTAAAAAACAATATCTGAAATACTACAGATTATTCAGTGCCATCT
ACAAAACCTCTATAGAAGGGAGGCTGCGTACCAGAAATATACATTTTAAC
AATATAAATATGAAAAACTATGTTCGAGAGGCCTTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_164:23502..23890

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049664 ID=TCONS_00049664|Name=TCONS_00049664|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_164:23502..23890 (Clytia hemisphaerica)
CTTCAAGGCCTCTCGAACATAGTTTTTCATATTTATATTGTTAAAATGTA
TATTTCTGGTACGCAGCCTCCCTTCTATAGAGGTTTTGTAGATGGCACTG
AATAATCTGTAGTATTTCAGATATTGTTTTTTAATAGAAATAACAGCACA
TGGGTCAATTTCCGTCTTTTCAGGTGTTTCCAATAGgtacgtttttataa
gaatgtaagGCAATGTTTATTGTAATAGAGCTATaggagtttttttttaa
gaaataattttaCTTTGTAGAACATAGATCTTTCATTTTACAGTTATTAG
TATTACTTGTAATTATTCCATCGTATGTATTAGTAATGCTTTTTTTATct
ccttgaaaaaaataacgtTCTACAAAAATTAAATGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031486XLOC_031486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049664-exon-scaffold_164-1491911889:23502..23890TCONS_00049664-exon-scaffold_164-1491911889:23502..23890Clytia hemisphaericaexon
TCONS_00049664-exon-scaffold_164-1510915933:23502..23890TCONS_00049664-exon-scaffold_164-1510915933:23502..23890Clytia hemisphaericaexon
TCONS_00049664-exon-scaffold_164-1575043694:23502..23890TCONS_00049664-exon-scaffold_164-1575043694:23502..23890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:23502..23890 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58758	0.716889	2.55485	2.2753	2.80334	2.57351	4.95847	8.06475	21.0103	20.4375	8.0511	16.9601	3.25719	4.93953	0.642627	0.505853	0	0.336883	0.44542	0.737612	0.330077	1.70505	0	0	0	3.25007	1.24875	0	1.42722	0.583176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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