TCONS_00049637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049637
Unique NameTCONS_00049637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049637 ID=TCONS_00049637|Name=TCONS_00049637|organism=Clytia hemisphaerica|type=transcript|length=1862bp
CGAAAAGGAGCAACATTAGATGATGTGAAGCAAGACTCAACATGGATTCA
AGGATTTGATTGGATGAAGATGGATACTTCACAATTTCCAATGAAGTcaa
tcaaagaattgaagctatCTTCTGAAGAGCTGACTGAAGTCCAAAAGGAA
ACATCCATCAATCAAGAATCCTTCCTGACCATCAATAGAAAGCTAGTCCC
AGCCGAAGTGGCAGACAGATATGTATTCTCTGGGTACCTCATTGATCCCA
ACAGTCACTCACTTTCAAAGGTCATCCGCATCATGTCTTACGTCTTCAAG
TTCTTGAGTAACATTCGAAAGAAAGTCACAATTCGTCCAAAGTCTTTACC
TGTTGTTGTTCATATTCCTTTGACAGATGAAGAACTTAAACAAGGAGCCA
ACTATTTATTTCGCAAGTGTACAGCTGAGATCAAGCAATTTCTACCCAAG
ACGAAATACCAAAACATTTCCAAAGAAGTAGATGGCATCCTGATGTACAC
AGGTTGAATCCTACCGACCAACGAAATAACGTGCACTGGAAAGTCCACCA
AAGCAATGAAAGACCTTTCGTCAACCACCTTTTGTGTTCCAGTAGTCGAC
AAGAACTCACCTGTTTCATACAGTATCATTAATGACATCCACTGGAATCA
TCCCTCTGCAATGCATTGTGGTGTCGAAACAACTTGGAGACACACCCTGA
AGGTTGCATTTATCATTGAAGGTAGAGCACTTGTCAAAATAATTCGCAAA
TCGTGTGAACGTTGTCGTTACCTTATCAAGAAGACCATTGCTGTCGAAAT
GGGACCCATCTCAAATCATAACCTAATGATTGCACCAGCCTTCTACATTA
CACAAGTTGATCTCTCTGGTCCCTACAAAGCTTATTCACCACATAACAAG
AGGTCAACCATCAAAGTTTGGCTGATCATATTCTGTTGTTGCACCACTTC
AACAACATCCTTCAAATGCATGGACAACTATGGTACAACATCCTTTCTGC
AAGCATTCGTTCGATTGGTATCTGAAGTTGGATTTCCGAAGACTGTGCTC
TGCGATGAAGGAAGTCAACTCGTAAAGGGATGTGATGACATGAAGATATC
ATTCACAGACCTCGCCAACAAACTCTACAGAGATGTGAACGTCAATTTCG
AAGTTTGCCCAGTTGGTGGGCATAATATGCACGGCAAGGtcgaaagaaaa
atcaaagaagtcAATGCTTCAATCTCAAAGATCGCTTCAAATGAGAAATT
ATCGTTGATGCAATGGGAAACAATCGGTGCCAAGATCTCAAACTCCATCA
ATAATTTGCCACTCGCATTGGGAAGTATCACCAGTGATTTTGAGACAATG
GACCTCATCACACCCAACCGCTTAAAATTGGGTAGGAACAACGAACACAG
CCCTGTTGGTAAGATGATTATCACCAACAAACCAGACAAGATCATCATGG
AAAATTCTCGTATCTTTGATGCATGGTTCGAAAATTGGCTTCAAAACCAT
TTACCCAAATTGATGGATCaaccaaaatggttttcaaCCAGCAAAGGAGA
CGTTGTACTCTTTCTAAAAAGCGAATCGAAGCTATCGAATACTTATCAAT
TTGAAATCGTGGAGAACCTTGAACCTACCGGTAGTGATGGAATCATTCGT
AAGGTCGACGTGAAGTATAGGAACAGCAACGAGAACGTGTTTCGAGTGAC
GAGAAGAGCTGTCCGTTCATTGGTCAAAATCAAGTCCGTTGACGAGGGCG
ATATTGTTACCGAGCTCGATCGGTTGGCTTGTATTGCTAACAAAATTGGT
TAATTGACTTTGGTGGGGAGTGTGAAATGATTATATCTTTTCATTAAAGt
aattataatttt
Run BLAST on NCBI

protein sequence of TCONS_00049637-protein

>TCONS_00049637-protein ID=TCONS_00049637-protein|Name=TCONS_00049637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MKDLSSTTFCVPVVDKNSPVSYSIINDIHWNHPSAMHCGVETTWRHTLKV
AFIIEGRALVKIIRKSCERCRYLIKKTIAVEMGPISNHNLMIAPAFYITQ
VDLSGPYKAYSPHNKRSTIKVWLIIFCCCTTSTTSFKCMDNYGTTSFLQA
FVRLVSEVGFPKTVLCDEGSQLVKGCDDMKISFTDLANKLYRDVNVNFEV
CPVGGHNMHGKVERKIKEVNASISKIASNEKLSLMQWETIGAKISNSINN
LPLALGSITSDFETMDLITPNRLKLGRNNEHSPVGKMIITNKPDKIIMEN
SRIFDAWFENWLQNHLPKLMDQPKWFSTSKGDVVLFLKSESKLSNTYQFE
IVENLEPTGSDGIIRKVDVKYRNSNENVFRVTRRAVRSLVKIKSVDEGDI
VTELDRLACIANKIG
Run BLAST on NCBI

transcript from alignment at scaffold_164:64307..66281+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049637 ID=TCONS_00049637|Name=TCONS_00049637|organism=Clytia hemisphaerica|type=transcript|length=1975bp|location=Sequence derived from alignment at scaffold_164:64307..66281+ (Clytia hemisphaerica)
CGAAAAGGAGCAACATTAGATGATGTGAAGCAAGACTCAACATGGATTCA
AGGATTTGATTGGATGAAGATGGATACTTCACAATTTCCAATGAAGTcaa
tcaaagaattgaagctatCTTCTGAAGAGCTGACTGAAGTCCAAAAGGAA
ACATCCATCAATCAAGAATCCTTCCTGACCATCAATAGAAAGCTAGTCCC
AGCCGAAGTGGCAGACAGATATGTATTCTCTGGGTACCTCATTGATCCCA
ACAGTCACTCACTTTCAAAGGTCATCCGCATCATGTCTTACGTCTTCAAG
TTCTTGAGTAACATTCGAAAGAAAGTCACAATTCGTCCAAAGTCTTTACC
TGTTGTTGTTCATATTCCTTTGACAGATGAAGAACTTAAACAAGGAGCCA
ACTATTTATTTCGCAAGTGTACAGCTGAGATCAAGCAATTTCTACCCAAG
ACGAAATACCAAAACATTTCCAAAGAAGTAGATGGCATCCTGATGTACAC
AGGTTGAATCCTACCGACCAACGAAATAACGTGCACTGGAAAGTCCACCA
AAGCAATGAAAGACCTTTCGTCAACCACCTTTTGTGTTCCAGTAGTCGAC
AAGAACTCACCTGTTTCATACAGTATCATTAATGACATCCACTGGAATCA
TCCCTCTGCAATGCATTGTGGTGTCGAAACAACTTGGAGACACACCCTGA
AGGTTGCATTTATCATTGAAGGCAGAGCACTTGTCAAAATAATTCGCAAA
TCGTGTGAACGTTGTCGTTACCTTATCAAGAAGACCATTGCTGTCGAAAT
GGGACCCATCTCAAATCATAACCTAATGATNAAGGTAGAGCACTTGTCAA
AATAATTCGCAAATCGTGTGAACGTTGTCGTTACCTTATCAAGAAGACCA
TTGCTGTCGAAATGGGACCCATCTCAAATCATAACCTAATGATTGCACCA
GCCTTCTACATTACACAAGTTGATCTCTCTGGTCCCTACAAAGCTTATTC
ACCACATAACAAGAGGTCAACCATCAAAGTTTGGCTGATCATATTCTGTT
GTTGCACCACTTCAACAACATCCTTCAAATGCATGGACAACTATGGTACA
ACATCCTTTCTGCAAGCATTCGTTCGATTGGTATCTGAAGTTGGATTTCC
GAAGACTGTGCTCTGCGATGAAGGAAGTCAACTCGTAAAGGGATGTGATG
ACATGAAGATATCATTCACAGACCTCGCCAACAAACTCTACAGAGATGTG
AACGTCAATTTCGAAGTTTGCCCAGTTGGTGGGCATAATATGCACGGCAA
GGtcgaaagaaaaatcaaagaagtcAATGCTTCAATCTCAAAGATCGCTT
CAAATGAGAAATTATCGTTGATGCAATGGGAAACAATCGGTGCCAAGATC
TCAAACTCCATCAATAATTTGCCACTCGCATTGGGAAGTATCACCAGTGA
TTTTGAGACAATGGACCTCATCACACCCAACCGCTTAAAATTGGGTAGGA
ACAACGAACACAGCCCTGTTGGTAAGATGATTATCACCAACAAACCAGAC
AAGATCATCATGGAAAATTCTCGTATCTTTGATGCATGGTTCGAAAATTG
GCTTCAAAACCATTTACCCAAATTGATGGATCaaccaaaatggttttcaa
CCAGCAAAGGAGACGTTGTACTCTTTCTAAAAAGCGAATCGAAGCTATCG
AATACTTATCAATTTGAAATCGTGGAGAACCTTGAACCTACCGGTAGTGA
TGGAATCATTCGTAAGGTCGACGTGAAGTATAGGAACAGCAACGAGAACG
TGTTTCGAGTGACGAGAAGAGCTGTCCGTTCATTGGTCAAAATCAAGTCC
GTTGACGAGGGCGATATTGTTACCGAGCTCGATCGGTTGGCTTGTATTGC
TAACAAAATTGGTTAATTGACTTTGGTGGGGAGTGTGAAATGATTATATC
TTTTCATTAAAGtaattataatttt

Coding sequence (CDS) from alignment at scaffold_164:64307..66281+

>TCONS_00049637 ID=TCONS_00049637|Name=TCONS_00049637|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_164:64307..66281+ (Clytia hemisphaerica)
ATGAAAGACCTTTCGTCAACCACCTTTTGTGTTCCAGTAGTCGACAAGAA
CTCACCTGTTTCATACAGTATCATTAATGACATCCACTGGAATCATCCCT
CTGCAATGCATTGTGGTGTCGAAACAACTTGGAGACACACCCTGAAGGTT
GCATTTATCATTGAAGGTAGAGCACTTGTCAAAATAATTCGCAAATCGTG
TGAACGTTGTCGTTACCTTATCAAGAAGACCATTGCTGTCGAAATGGGAC
CCATCTCAAATCATAACCTAATGATTGCACCAGCCTTCTACATTACACAA
GTTGATCTCTCTGGTCCCTACAAAGCTTATTCACCACATAACAAGAGGTC
AACCATCAAAGTTTGGCTGATCATATTCTGTTGTTGCACCACTTCAACAA
CATCCTTCAAATGCATGGACAACTATGGTACAACATCCTTTCTGCAAGCA
TTCGTTCGATTGGTATCTGAAGTTGGATTTCCGAAGACTGTGCTCTGCGA
TGAAGGAAGTCAACTCGTAAAGGGATGTGATGACATGAAGATATCATTCA
CAGACCTCGCCAACAAACTCTACAGAGATGTGAACGTCAATTTCGAAGTT
TGCCCAGTTGGTGGGCATAATATGCACGGCAAGGtcgaaagaaaaatcaa
agaagtcAATGCTTCAATCTCAAAGATCGCTTCAAATGAGAAATTATCGT
TGATGCAATGGGAAACAATCGGTGCCAAGATCTCAAACTCCATCAATAAT
TTGCCACTCGCATTGGGAAGTATCACCAGTGATTTTGAGACAATGGACCT
CATCACACCCAACCGCTTAAAATTGGGTAGGAACAACGAACACAGCCCTG
TTGGTAAGATGATTATCACCAACAAACCAGACAAGATCATCATGGAAAAT
TCTCGTATCTTTGATGCATGGTTCGAAAATTGGCTTCAAAACCATTTACC
CAAATTGATGGATCaaccaaaatggttttcaaCCAGCAAAGGAGACGTTG
TACTCTTTCTAAAAAGCGAATCGAAGCTATCGAATACTTATCAATTTGAA
ATCGTGGAGAACCTTGAACCTACCGGTAGTGATGGAATCATTCGTAAGGT
CGACGTGAAGTATAGGAACAGCAACGAGAACGTGTTTCGAGTGACGAGAA
GAGCTGTCCGTTCATTGGTCAAAATCAAGTCCGTTGACGAGGGCGATATT
GTTACCGAGCTCGATCGGTTGGCTTGTATTGCTAACAAAATTGGTTAAAT
GAAAGACCTTTCGTCAACCACCTTTTGTGTTCCAGTAGTCGACAAGAACT
CACCTGTTTCATACAGTATCATTAATGACATCCACTGGAATCATCCCTCT
GCAATGCATTGTGGTGTCGAAACAACTTGGAGACACACCCTGAAGGTTGC
ATTTATCATTGAAGGTAGAGCACTTGTCAAAATAATTCGCAAATCGTGTG
AACGTTGTCGTTACCTTATCAAGAAGACCATTGCTGTCGAAATGGGACCC
ATCTCAAATCATAACCTAATGATTGCACCAGCCTTCTACATTACACAAGT
TGATCTCTCTGGTCCCTACAAAGCTTATTCACCACATAACAAGAGGTCAA
CCATCAAAGTTTGGCTGATCATATTCTGTTGTTGCACCACTTCAACAACA
TCCTTCAAATGCATGGACAACTATGGTACAACATCCTTTCTGCAAGCATT
CGTTCGATTGGTATCTGAAGTTGGATTTCCGAAGACTGTGCTCTGCGATG
AAGGAAGTCAACTCGTAAAGGGATGTGATGACATGAAGATATCATTCACA
GACCTCGCCAACAAACTCTACAGAGATGTGAACGTCAATTTCGAAGTTTG
CCCAGTTGGTGGGCATAATATGCACGGCAAGGtcgaaagaaaaatcaaag
aagtcAATGCTTCAATCTCAAAGATCGCTTCAAATGAGAAATTATCGTTG
ATGCAATGGGAAACAATCGGTGCCAAGATCTCAAACTCCATCAATAATTT
GCCACTCGCATTGGGAAGTATCACCAGTGATTTTGAGACAATGGACCTCA
TCACACCCAACCGCTTAAAATTGGGTAGGAACAACGAACACAGCCCTGTT
GGTAAGATGATTATCACCAACAAACCAGACAAGATCATCATGGAAAATTC
TCGTATCTTTGATGCATGGTTCGAAAATTGGCTTCAAAACCATTTACCCA
AATTGATGGATCaaccaaaatggttttcaaCCAGCAAAGGAGACGTTGTA
CTCTTTCTAAAAAGCGAATCGAAGCTATCGAATACTTATCAATTTGAAAT
CGTGGAGAACCTTGAACCTACCGGTAGTGATGGAATCATTCGTAAGGTCG
ACGTGAAGTATAGGAACAGCAACGAGAACGTGTTTCGAGTGACGAGAAGA
GCTGTCCGTTCATTGGTCAAAATCAAGTCCGTTGACGAGGGCGATATTGT
TACCGAGCTCGATCGGTTGGCTTGTATTGCTAACAAAATTGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031475XLOC_031475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049637-proteinTCONS_00049637-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049637-exon-scaffold_164-1491911889:64307..65027TCONS_00049637-exon-scaffold_164-1491911889:64307..65027Clytia hemisphaericaexon
TCONS_00049637-exon-scaffold_164-1510915933:64307..65027TCONS_00049637-exon-scaffold_164-1510915933:64307..65027Clytia hemisphaericaexon
TCONS_00049637-exon-scaffold_164-1575043694:64307..65027TCONS_00049637-exon-scaffold_164-1575043694:64307..65027Clytia hemisphaericaexon
TCONS_00049637-exon-scaffold_164-1491911889:65141..66281TCONS_00049637-exon-scaffold_164-1491911889:65141..66281Clytia hemisphaericaexon
TCONS_00049637-exon-scaffold_164-1510915933:65141..66281TCONS_00049637-exon-scaffold_164-1510915933:65141..66281Clytia hemisphaericaexon
TCONS_00049637-exon-scaffold_164-1575043694:65141..66281TCONS_00049637-exon-scaffold_164-1575043694:65141..66281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:64307..66281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27381	1.95523	0.700945	0.625132	0.895994	0.762018	1.21136	1.18021	0.6602	1.03853	0.937021	3.70546	0.525205	0.360747	0.215735	0.274932	0.379491	0.252	0.219759	0.308113	0.477688	0.317753	0.558115	0.438778	0.345652	0.483832	0.307173	0.125632	0.404972	0.218436
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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