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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049639 ID=TCONS_00049639|Name=TCONS_00049639|organism=Clytia hemisphaerica|type=transcript|length=927bp
gtttttttgtcgttttttaccagtttttactattttttagagtcaaccag
caataaactttgtttgatatcttttgattgaatgaatatttttgaaaatt
tttttgatctaagattgaagaatcactcctgtgaaaatggtaattatacc
acatttctacaaaaagttgatttttttctttttcatttttcatcttcatt
ttccttttttttctcaatttttctacttgataatattccactcacgaata
tctttttaacaagcacttaatcgtaacttgattcgaattctatcaaaagt
tacagccatttttgtctccagctgcaaattatttcgagacagactttaac
tCATATCTTCAGATATCTAACGAATCAGCCAAAGCTTACCTAAGCGACGT
TTAGCACTACAGATCTTCTGATTGATGCATTTCactatttgtgatttttt
gagtCCTGGAAATTTCTTCTGTCCATGTACTGAAAAAGAACAAGAAGCTC
CATACCAATTCATCAAGAAGCTCCATACCAATTCATCAAGAAGCAACAAT
AAACAAAAAAGGTCACCTGATGTCTATCAATaTGAAATGGTTACCTTTGC
GGGCTTTGTCATTGTGGACGCACCAGATAGAGGTGTTTAGGTATAtagtt
taaaaagaaactagcATCAAACAAAAGATTTAATAAAGCAGATCAGTGTT
GTGTTACCTTTGCATGCTTTGTCATTGTGGACACGGAAGATCGAGGTGTT
GCTGCTAGTTCCTAAAAGGCAttcaaataagaacaaaatgatACCAGCCG
TATAAATTTTAtgAACTCACATTGGTTCCACAGCTGGTATCTTCAACTGA
TGACTTGAAAGAATCTGTCACCATCACAAGATCTTTAACAAGGGTTTCGA
ATAATTCCAACTTTGACCCTGAAAagg Run BLAST on NCBI transcript from alignment at scaffold_164:101171..106254+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049639 ID=TCONS_00049639|Name=TCONS_00049639|organism=Clytia hemisphaerica|type=transcript|length=5084bp|location=Sequence derived from alignment at scaffold_164:101171..106254+ (Clytia hemisphaerica)
gtttttttgtcgttttttaccagtttttactattttttagagtcaaccag
caataaactttgtttgatatcttttgattgaatgaatatttttgaaaatt
tttttgatctaagattgaagaatcactcctgtgaaaatggtaattatacc
acatttctacaaaaagttgatttttttctttttcatttttcatcttcatt
ttccttttttttctcaatttttctacttgataatattccactcacgaata
tctttttaacaagcacttaatcgtaacttgattcgaattctatcaaaagt
tacagccatttttgtctccagctgcaaattatttcgagacagactttaac
tCATATCTTCAGATATCTAACGAATCAGCCAAAGCTTACCTAAGCGACGT
TTAGCACTACAGATCTTCTGATTGATGCATTTCactatttgtgatttttt
gagtCCTGGAAATTTCTTCTGTCCATGTACTGAAAAAGAACAAGAAGCTC
CATACCAATTCATCAAGAAGCTCCATACCAATTCATCAAGAAGCAACAAT
AAACAAAAAAGGTCACCTGATGTCTATCAATGTAAGTTATTTCCTTACCT
ATGATATCTCCGATTATGGCAGGGTTGAGAGCAACTTTTCTTTCTCCTGT
TGACCTATTTACTCCTCCTTGTGCAGAACACCTATTGAAGTAAGAGATAC
ATAAGTTAAAggaaaaccaaaattttttatAATCGACCAACTCACTTtca
caaaattcacaaaaaaaaaatataatggtAGCATAAACCTTTGCAAATCG
TTGgatgaaaaaactaaatttggcgggaatttaatttggcggttgctgaa
aaatttaaccttgagatggcgtcaaaacagcgaaaaattagcaaaaacac
tttaaaagagatcatattttcaaaatgtttaatttggcgggaatttaatt
tggcaaatggcggaaaaaagaaattttggcgggaactcaatttggcggat
ttcagtcaaatccgccaaattttcttttcgccaaaatttcttcctttaag
gtatatttATTACAATTCCGAGGTTTTGTAGGTTTCCCATTTTGTAAAGA
ATTTTTCGCAAGCGTAAACTTTTGCTAATTGCCCTgtgaagaattttcaa
agacatttactttagtgaaaaaggtcaaaatttgcaaaagtttgtaTGCT
TTAAGtacctttaagggaagaaatttttgcggaatttaattttgcgaatt
tgggcgtaattcgcgaaattaaattctgcgaaacaccgaaattaaattcc
gcgaaacacaccaaaatggctAAACCGCGAAATCAAATTCTGCGAAACAC
GAATAaatctttttagggcaaaatagggcttttcgtagacaaataattcc
ctcaaccgcgaaattaaattccgtgaagtttgccattttgaaactctgat
tcgcgaaattaaattccgcgaaaatttcttctcgcgaaaatttcttccct
taaggtagttttTCCCTTTACCAATaaggctcagccaaagaaattttcag
aatcataatttccaaaacttcagaaaataacagaaaaacgaagaagagag
ttacaaacaaaattggtgattttattttgtttaatctcttataaataGCA
CAGCTTGGTCTCTAAAGAATGTACACTTTCTTAACTACCCATctgtcata
atttttttaccaagcatagggttaagcataagTCAAAGCTCAAAATTGAG
CATCATAGCTGGCCTCAccagaaaattggagttgctcaCAAAAAGTGTGT
GAAAAACCCTCATTCAACAGTCaacactctaaaatctttagttttttcGG
ACAACAAGTGATGTAGGAAATAACCTTCAAAATTGggatttattttatag
atttggactttttttttctttttcagtaagTGCCTTTCCTttcttaaaaa
ctaataaagGGGGTCCCAATAAGGTCCAGCGTGGGGGTGCTAATTTGACA
CACGTGAGtagattttaaaaatgaaaatgtgaaATGTTCAAAAGATAGTG
CTACTCAAACACATATTAcctatttattaaaaaaatgtgtagggAATATG
TGTTTGTGTGTATGCTGATAACGTGTAGGACCACTTTAAATAGTGTTTAG
GTATCATACCCTACTAATTCCTCGTCAGTAAAAGAAAGGTCAACTAATGC
TCCTATCAATTTTGACCAGTcttcaaatgattttgatttccatcTCAAAT
CGTCTATTTCTTTTCGTGAGAAAACCAGTGTTGTTGTGTATGGAAGTTTG
ATGTTctgttaataaaaaaataaagttttaattttaaagTGTTAAATGAT
TATCACCTTAAAGCCCATCAACATTATATTTTCTAAGGTCTGAATAGCTG
CTTCAAAAAGTCCTGAGCTTGCATAGAGATTATAGTTAGAGAGTTATTCC
TCAAGTagattaaaacaaaaatggtttGAAAATCTCAATTCAATTTAAAT
TTAACATATAACAAACTAACATAAAATGATGAAGCTTTATAATCTTAAAA
CTTAGGCTGTAGATGTTTAGTTTCCTAAATATTGAAAGATCAGATGCTTA
CTCTAATATGGTCAAGTTCATGCCTTTgattctaaaataaaaacacacaa
aaaaaaaactagaaaaaggTTACTCCTCCTGCCCTAGCCAAAATACAAGG
AGATAGTGTTGATGCCTTTCAGAAGTTGTAACCCTCTTTAAAAATTGCAA
CTGTTGTAGAAAAAGAATTTTGTATTCCTCCAAACCTAGAATAAAACTTG
TTTTTCGCAGCTTCTATATATTGATAACTGTTTTAGACcgcaaaaaatta
atttcaataaggtaactttaaattttttcaagttttataaaGAACTACAT
GATTATTACCTTTTCGAAATTACTGCCTTGACTAGATTGTTGAAAATCAT
CAGATTCTTGACTGGATTCCTGAAATAATTTGTGTTCTATTTTATATGGA
TTGTGATAGATAAGCCagcaaagaaaatgaaaatgaaactcTTTGTCATA
ACAAGCACAATAGTAAAGAGAAAATAAGTCATTGATAAAATACTTACTGT
ATCAAAGGTGTCCTTTGTGACATTATTTGGTGTATTCTGCAGCAATTGCT
AAAATTAAAGTGGATTATATACTGAGTATACCAACACTATTCTACCCGAG
CTTGTTGTGCCTGGTTCTTGTTTGTTTTAACTCAGTTATTTTGACCACTT
GAAACaaaaatagtttgtttatttacttttgttttttagaTGAAATGGTT
ACCTTTGCGGGCTTTGTCATTGTGGACGCACCAGATAGAGGTGTTTAGGT
ATAtagtttaaaaagaaactagcATCAAACAAAAGATTTAATAAAGCAGG
TAGACATTTTTTCATATACTTATTTGTCTTGACTGCATTACTACGGCATA
TTattttaaaagtgttaattctTTTACGAAAAAAAACTGGTTTGAGGTCA
ATAACAGGAGGCTCAGATCGAGCTTACAAGTTCTGTACGTAGTATAAAAG
AAAACTCTCAGTGTAGCCATTTCTGTGAAGATGTCTAAAATAGATTATAT
TTATATTGACCTCTTGAGAATGAGAACCAATCAAAAGAGTGCATTTGACC
TTTATTGACCTAGCcagtgaataaaaaattatttttgtattctAGATCAG
TGTTGTGTTACCTTTGCATGCTTTGTCATTGTGGACACGGAAGATCGAGG
TGTTGCTGCTAGTTCCTAAAAGGCAttcaaataagaacaaaatgatACCA
GCCGTATAAATTTTAGTAAGTGCTTGtagatttcacaaatgagaGGTGCT
ATTTGCAGGAAGATCATCAGAGTTTCCCTACATTAATtaatacaaaattt
attttagaatgtacaaaatgttttaaattagtgttgaaaatattcaaacc
ttgttttttgtgtgtgtgGTGTTCACCTTTTTTACACCAACCAAGTGATC
TTCACATCTTCCGTGTGAGCCTGTTTCTGGTACATACTattgtttgaaaa
taatttacacTGGATCAATTTCCCATGACAAATGTTTCAAATAGTTATTT
TGCTTAATTAAAAGATCATAAttatttaaatataatttttagtgAACTCA
CATTGGTTCCACAGCTGGTATCTTCAACTGATGACTTGAAAGAATCTGTC
ACCATCACAAGATCTTTAACAAGGGTTTCGAATAATTCCAACTTTGACCC
TGAAAaggtaaaagaaaatttttaaactaaTATTTGTTTGACACCTACAT
TCAGATTCcaatctctttttttttattctgagAGTGATGCAAACAGatag
tagaggccactatgtcttctCGTGTGCAGGtttaattttgcgattttgta
ttttagaaaaatttgatttaaaaaatcaggAAACTAAGCACATTATATAA
CATAATATCAATAAGATAACagaagttttttgaaatgaaTTCCTTACTTT
GCTTTTCGATTAAGGCTTTTGCTTCTTCCAGGCGATCTTCAACTGATTGG
CAGTTTGANAACACGGAAGATCGAGGTGTTGCTGGTAGTTCCTAAAAGGC
AttcaaataagaacaaaatgatACCAGCCGTATAAATTTTAGTAAGTGCT
TGtagatttcacaaatgagaGGTGCTATTTGCAGGAAGATCATCAGAGTT
TCCCTACATTAATtaatacaaaatttattttagaatgtacaaaatgtttt
aaattagtgttgaaaatattcaaaccttgttttttgtgtgtgtgGTGTTC
ACCTTTTTTACACCAACCAAGTGATCTTCACATCTTCCGTGTGAGCCTGT
TTCTGGTACATACTattgtttgaaaataatttacacTGGATCAATTTCCC
ATGACAAATGTTTCAAATAGTTATTTTGCTTAATTAAAAGATCATAAtta
tttaaatataatttttagtgAACTCACATTGGTTCCACAGCTGGTATCTT
CAACTGATGACTTGAAAGAATCTGTCACCATCACAAGATCTTTAACAAGG
GTTTCGAATAATTCCAACTTTGACCCTGAAAagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049639-exon-scaffold_164-1491911889:101171..101751 | TCONS_00049639-exon-scaffold_164-1491911889:101171..101751 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1510915933:101171..101751 | TCONS_00049639-exon-scaffold_164-1510915933:101171..101751 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1575043694:101171..101751 | TCONS_00049639-exon-scaffold_164-1575043694:101171..101751 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1491911889:104460..104569 | TCONS_00049639-exon-scaffold_164-1491911889:104460..104569 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1510915933:104460..104569 | TCONS_00049639-exon-scaffold_164-1510915933:104460..104569 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1575043694:104460..104569 | TCONS_00049639-exon-scaffold_164-1575043694:104460..104569 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1491911889:104866..104985 | TCONS_00049639-exon-scaffold_164-1491911889:104866..104985 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1510915933:104866..104985 | TCONS_00049639-exon-scaffold_164-1510915933:104866..104985 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1575043694:104866..104985 | TCONS_00049639-exon-scaffold_164-1575043694:104866..104985 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1491911889:106139..106254 | TCONS_00049639-exon-scaffold_164-1491911889:106139..106254 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1510915933:106139..106254 | TCONS_00049639-exon-scaffold_164-1510915933:106139..106254 | Clytia hemisphaerica | exon |
| TCONS_00049639-exon-scaffold_164-1575043694:106139..106254 | TCONS_00049639-exon-scaffold_164-1575043694:106139..106254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_164 | supercontig | scaffold_164:101171..106254 + |
Blast
The following BLAST results are available for this feature:
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