TCONS_00049640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049640
Unique NameTCONS_00049640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049640 ID=TCONS_00049640|Name=TCONS_00049640|organism=Clytia hemisphaerica|type=transcript|length=651bp
cttgattcgaattctatcaaaagttacagccatttttgtctccagctgca
aattatttcgagacagactttaactCATATCTTCAGATATCTAACGAATC
AGCCAAAGCTTACCTAAGCGACGTTTAGCACTACAGATCTTCTGATTGAT
GCATTTCactatttgtgattttttgagtCCTGGAAATTTCTTCTGTCCAT
GTACTGAAAAAGAACAAGAAGCTCCATACCAATTCATCAAGAAGCTCCAT
ACCAATTCATCAAGAAGCAACAATAAACAAAAAAGGTCACCTGATGTCTA
TCAATaTGAAATGGTTACCTTTGCGGGCTTTGTCATTGTGGACGCACCAG
ATAGAGGTGTTTAGGTATAtagtttaaaaagaaactagcATCAAACAAAA
GATTTAATAAAGCAGATCAGTGTTGTGTTACCTTTGCATGCTTTGTCATT
GTGGACACGGAAGATCGAGGTGTTGCTGGTAGTTCCTAAAAGGCAttcaa
ataagaacaaaatgatACCAGCCGTATAAATTTTAtgAACTCACATTGGT
TCCACAGCTGGTATCTTCAACTGATGACTTGAAAGAATCTGTCACCATCA
CAAGATCTTTAACAAGGGTTTCGAATAATTCCAACTTTGACCCTGAAAag
g
Run BLAST on NCBI

transcript from alignment at scaffold_164:101447..106254+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049640 ID=TCONS_00049640|Name=TCONS_00049640|organism=Clytia hemisphaerica|type=transcript|length=4808bp|location=Sequence derived from alignment at scaffold_164:101447..106254+ (Clytia hemisphaerica)
cttgattcgaattctatcaaaagttacagccatttttgtctccagctgca
aattatttcgagacagactttaactCATATCTTCAGATATCTAACGAATC
AGCCAAAGCTTACCTAAGCGACGTTTAGCACTACAGATCTTCTGATTGAT
GCATTTCactatttgtgattttttgagtCCTGGAAATTTCTTCTGTCCAT
GTACTGAAAAAGAACAAGAAGCTCCATACCAATTCATCAAGAAGCTCCAT
ACCAATTCATCAAGAAGCAACAATAAACAAAAAAGGTCACCTGATGTCTA
TCAATGTAAGTTATTTCCTTACCTATGATATCTCCGATTATGGCAGGGTT
GAGAGCAACTTTTCTTTCTCCTGTTGACCTATTTACTCCTCCTTGTGCAG
AACACCTATTGAAGTAAGAGATACATAAGTTAAAggaaaaccaaaatttt
ttatAATCGACCAACTCACTTtcacaaaattcacaaaaaaaaaatataat
ggtAGCATAAACCTTTGCAAATCGTTGgatgaaaaaactaaatttggcgg
gaatttaatttggcggttgctgaaaaatttaaccttgagatggcgtcaaa
acagcgaaaaattagcaaaaacactttaaaagagatcatattttcaaaat
gtttaatttggcgggaatttaatttggcaaatggcggaaaaaagaaattt
tggcgggaactcaatttggcggatttcagtcaaatccgccaaattttctt
ttcgccaaaatttcttcctttaaggtatatttATTACAATTCCGAGGTTT
TGTAGGTTTCCCATTTTGTAAAGAATTTTTCGCAAGCGTAAACTTTTGCT
AATTGCCCTgtgaagaattttcaaagacatttactttagtgaaaaaggtc
aaaatttgcaaaagtttgtaTGCTTTAAGtacctttaagggaagaaattt
ttgcggaatttaattttgcgaatttgggcgtaattcgcgaaattaaattc
tgcgaaacaccgaaattaaattccgcgaaacacaccaaaatggctAAACC
GCGAAATCAAATTCTGCGAAACACGAATAaatctttttagggcaaaatag
ggcttttcgtagacaaataattccctcaaccgcgaaattaaattccgtga
agtttgccattttgaaactctgattcgcgaaattaaattccgcgaaaatt
tcttctcgcgaaaatttcttcccttaaggtagttttTCCCTTTACCAATa
aggctcagccaaagaaattttcagaatcataatttccaaaacttcagaaa
ataacagaaaaacgaagaagagagttacaaacaaaattggtgattttatt
ttgtttaatctcttataaataGCACAGCTTGGTCTCTAAAGAATGTACAC
TTTCTTAACTACCCATctgtcataatttttttaccaagcatagggttaag
cataagTCAAAGCTCAAAATTGAGCATCATAGCTGGCCTCAccagaaaat
tggagttgctcaCAAAAAGTGTGTGAAAAACCCTCATTCAACAGTCaaca
ctctaaaatctttagttttttcGGACAACAAGTGATGTAGGAAATAACCT
TCAAAATTGggatttattttatagatttggactttttttttctttttcag
taagTGCCTTTCCTttcttaaaaactaataaagGGGGTCCCAATAAGGTC
CAGCGTGGGGGTGCTAATTTGACACACGTGAGtagattttaaaaatgaaa
atgtgaaATGTTCAAAAGATAGTGCTACTCAAACACATATTAcctattta
ttaaaaaaatgtgtagggAATATGTGTTTGTGTGTATGCTGATAACGTGT
AGGACCACTTTAAATAGTGTTTAGGTATCATACCCTACTAATTCCTCGTC
AGTAAAAGAAAGGTCAACTAATGCTCCTATCAATTTTGACCAGTcttcaa
atgattttgatttccatcTCAAATCGTCTATTTCTTTTCGTGAGAAAACC
AGTGTTGTTGTGTATGGAAGTTTGATGTTctgttaataaaaaaataaagt
tttaattttaaagTGTTAAATGATTATCACCTTAAAGCCCATCAACATTA
TATTTTCTAAGGTCTGAATAGCTGCTTCAAAAAGTCCTGAGCTTGCATAG
AGATTATAGTTAGAGAGTTATTCCTCAAGTagattaaaacaaaaatggtt
tGAAAATCTCAATTCAATTTAAATTTAACATATAACAAACTAACATAAAA
TGATGAAGCTTTATAATCTTAAAACTTAGGCTGTAGATGTTTAGTTTCCT
AAATATTGAAAGATCAGATGCTTACTCTAATATGGTCAAGTTCATGCCTT
TgattctaaaataaaaacacacaaaaaaaaaactagaaaaaggTTACTCC
TCCTGCCCTAGCCAAAATACAAGGAGATAGTGTTGATGCCTTTCAGAAGT
TGTAACCCTCTTTAAAAATTGCAACTGTTGTAGAAAAAGAATTTTGTATT
CCTCCAAACCTAGAATAAAACTTGTTTTTCGCAGCTTCTATATATTGATA
ACTGTTTTAGACcgcaaaaaattaatttcaataaggtaactttaaatttt
ttcaagttttataaaGAACTACATGATTATTACCTTTTCGAAATTACTGC
CTTGACTAGATTGTTGAAAATCATCAGATTCTTGACTGGATTCCTGAAAT
AATTTGTGTTCTATTTTATATGGATTGTGATAGATAAGCCagcaaagaaa
atgaaaatgaaactcTTTGTCATAACAAGCACAATAGTAAAGAGAAAATA
AGTCATTGATAAAATACTTACTGTATCAAAGGTGTCCTTTGTGACATTAT
TTGGTGTATTCTGCAGCAATTGCTAAAATTAAAGTGGATTATATACTGAG
TATACCAACACTATTCTACCCGAGCTTGTTGTGCCTGGTTCTTGTTTGTT
TTAACTCAGTTATTTTGACCACTTGAAACaaaaatagtttgtttatttac
ttttgttttttagaTGAAATGGTTACCTTTGCGGGCTTTGTCATTGTGGA
CGCACCAGATAGAGGTGTTTAGGTATAtagtttaaaaagaaactagcATC
AAACAAAAGATTTAATAAAGCAGGTAGACATTTTTTCATATACTTATTTG
TCTTGACTGCATTACTACGGCATATTattttaaaagtgttaattctTTTA
CGAAAAAAAACTGGTTTGAGGTCAATAACAGGAGGCTCAGATCGAGCTTA
CAAGTTCTGTACGTAGTATAAAAGAAAACTCTCAGTGTAGCCATTTCTGT
GAAGATGTCTAAAATAGATTATATTTATATTGACCTCTTGAGAATGAGAA
CCAATCAAAAGAGTGCATTTGACCTTTATTGACCTAGCcagtgaataaaa
aattatttttgtattctAGATCAGTGTTGTGTTACCTTTGCATGCTTTGT
CATTGTGGACACGGAAGATCGAGGTGTTGCTGCTAGTTCCTAAAAGGCAt
tcaaataagaacaaaatgatACCAGCCGTATAAATTTTAGTAAGTGCTTG
tagatttcacaaatgagaGGTGCTATTTGCAGGAAGATCATCAGAGTTTC
CCTACATTAATtaatacaaaatttattttagaatgtacaaaatgttttaa
attagtgttgaaaatattcaaaccttgttttttgtgtgtgtgGTGTTCAC
CTTTTTTACACCAACCAAGTGATCTTCACATCTTCCGTGTGAGCCTGTTT
CTGGTACATACTattgtttgaaaataatttacacTGGATCAATTTCCCAT
GACAAATGTTTCAAATAGTTATTTTGCTTAATTAAAAGATCATAAttatt
taaatataatttttagtgAACTCACATTGGTTCCACAGCTGGTATCTTCA
ACTGATGACTTGAAAGAATCTGTCACCATCACAAGATCTTTAACAAGGGT
TTCGAATAATTCCAACTTTGACCCTGAAAaggtaaaagaaaatttttaaa
ctaaTATTTGTTTGACACCTACATTCAGATTCcaatctctttttttttat
tctgagAGTGATGCAAACAGatagtagaggccactatgtcttctCGTGTG
CAGGtttaattttgcgattttgtattttagaaaaatttgatttaaaaaat
caggAAACTAAGCACATTATATAACATAATATCAATAAGATAACagaagt
tttttgaaatgaaTTCCTTACTTTGCTTTTCGATTAAGGCTTTTGCTTCT
TCCAGGCGATCTTCAACTGATTGGCAGTTTGANAACACGGAAGATCGAGG
TGTTGCTGGTAGTTCCTAAAAGGCAttcaaataagaacaaaatgatACCA
GCCGTATAAATTTTAGTAAGTGCTTGtagatttcacaaatgagaGGTGCT
ATTTGCAGGAAGATCATCAGAGTTTCCCTACATTAATtaatacaaaattt
attttagaatgtacaaaatgttttaaattagtgttgaaaatattcaaacc
ttgttttttgtgtgtgtgGTGTTCACCTTTTTTACACCAACCAAGTGATC
TTCACATCTTCCGTGTGAGCCTGTTTCTGGTACATACTattgtttgaaaa
taatttacacTGGATCAATTTCCCATGACAAATGTTTCAAATAGTTATTT
TGCTTAATTAAAAGATCATAAttatttaaatataatttttagtgAACTCA
CATTGGTTCCACAGCTGGTATCTTCAACTGATGACTTGAAAGAATCTGTC
ACCATCACAAGATCTTTAACAAGGGTTTCGAATAATTCCAACTTTGACCC
TGAAAagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031476XLOC_031476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049640-exon-scaffold_164-1491911889:101447..101751TCONS_00049640-exon-scaffold_164-1491911889:101447..101751Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1510915933:101447..101751TCONS_00049640-exon-scaffold_164-1510915933:101447..101751Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1575043694:101447..101751TCONS_00049640-exon-scaffold_164-1575043694:101447..101751Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1491911889:104460..104569TCONS_00049640-exon-scaffold_164-1491911889:104460..104569Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1510915933:104460..104569TCONS_00049640-exon-scaffold_164-1510915933:104460..104569Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1575043694:104460..104569TCONS_00049640-exon-scaffold_164-1575043694:104460..104569Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1491911889:104866..104919TCONS_00049640-exon-scaffold_164-1491911889:104866..104919Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1510915933:104866..104919TCONS_00049640-exon-scaffold_164-1510915933:104866..104919Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1575043694:104866..104919TCONS_00049640-exon-scaffold_164-1575043694:104866..104919Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1491911889:105746..105811TCONS_00049640-exon-scaffold_164-1491911889:105746..105811Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1510915933:105746..105811TCONS_00049640-exon-scaffold_164-1510915933:105746..105811Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1575043694:105746..105811TCONS_00049640-exon-scaffold_164-1575043694:105746..105811Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1491911889:106139..106254TCONS_00049640-exon-scaffold_164-1491911889:106139..106254Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1510915933:106139..106254TCONS_00049640-exon-scaffold_164-1510915933:106139..106254Clytia hemisphaericaexon
TCONS_00049640-exon-scaffold_164-1575043694:106139..106254TCONS_00049640-exon-scaffold_164-1575043694:106139..106254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:101447..106254 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.89961	2.99741	2.87404	4.5178	3.98242	4.97516	0.123371	2.00944	4.31387	3.71105	4.99667	6.6518	6.4378	5.77791	0	0.0528457	2.01699	0.498342	0.277534	0.205246	4.25755	3.92349	0.242481	0	0.17883	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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