TCONS_00049652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049652
Unique NameTCONS_00049652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049652 ID=TCONS_00049652|Name=TCONS_00049652|organism=Clytia hemisphaerica|type=transcript|length=420bp
GGAAAAGAAAGTCAGAAACAacagAGAAGGAAGACGATCAAGATGAACAT
AACACGGAAAGAGACATGGAAGAAAAAGAACCGTCATCAACAGAAAAGAA
AAGTGGGAAAagcaaaattgttaaaaaaaAATCGGAAAAATCTAATAAAc
cagaagaaaaaaaggcaaaaatagaGGCAAGCAACATAGCTGGTCGAGAG
CTAATGGAAAAGGTTGACGaaaatgcaaataatgATTTGTCTGAAGAACT
CTTGGacaattttcttcaaaagacACAAGACAAGACCCAACATCACGAAA
GGCATATTTTCACCTTTGAAATCAAGTGAAGGGAGTCAAAGCAAAAACAA
TGGAAATTCTGATCACAACGCAACACAACCTTGTTTCTCGCCTGATGAAA
GTccaaaaataacaaacaaa
Run BLAST on NCBI

transcript from alignment at scaffold_164:107288..109408-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049652 ID=TCONS_00049652|Name=TCONS_00049652|organism=Clytia hemisphaerica|type=transcript|length=2121bp|location=Sequence derived from alignment at scaffold_164:107288..109408- (Clytia hemisphaerica)
GGAAAAGAAAGTCAGAAACAACAGGTTGTTTTTTTTCTTTCATTTTGAAA
GAATTCTCGAGTAAGTTCTAACACAATAAGAATTCACTGTATTTGATCCA
AAATCTCAGCCGTATGCTGAATAACATGTTTGAACTGTTCGTCGGTACAC
CAGAGGCTCGTGTATATTATTCCAAAGATTTTTCACTGCGGTCAACTTCA
GCAAATCCATCTACAGTCCAAGTCAAAACAGAGATTTTATTAACGAAATG
TCATCGTGTCGAATAATGCATATTGCGATTATTTCGCTGGAGGAAGGGTG
CAGAATTTTGATAGTCTGTACAAGCGAATCGATTTGGATAAGGGATAAGT
CATGATTCCAGCCCTGCCAACTGTTGAAATTTGAACTGCAAAGCGAGAAA
AAAATGAAAAATAGATAAAAAATATTACTTTATTTATAGAGAAGGAAGAC
GATCAAGATGAACATAACACGGAAAGTAAGCAGTTAAAGAGCTATTTTTT
CTTAGAGTCTTCAGGGTGTGATACCTCACCCTCTTTGATTTTGATAAAAT
TTGGTCCAAATGATATATCATACAAGAAAATAAGACCTTTTGTAGAGAAT
GAGAAAAAATCAAATAGTCTCCAATAATTTTATGTAAACTTGACCCGATA
TTCAGTTAGTACTAACTGTACTAAGTGCACCAAGGGTGGTGGTGGTGTTG
TTACTAACTTCTTGCAAAAAAGCAGTCAGTAGGCATGATGTCTTGTACTA
ACTGATTCACCCCCTGATTCTTTCAATTAAGTATATCATTAAATAAAAAT
AGTTGACTGTTGACACTGTTAATTTTTCTACAGGAGACATGGAAGAAAAA
GAACCGTCATCAACAGAAAAGAAAAGTGGGAAAAGCAAAATTGTTAAAAA
AAGTAATCTTAGTTTTATTTTTTCTTCATGCTATTTTTAATGCTTTCAAT
GTATCTTTTCTTTTAGTTTTTTTGGGAAACAAGCTCTCAGTCATGCTTAG
GGATATTTTAGACTCTAATTATGTTTTCTATTTAGTCTCTAATTTTTCAT
GAGGTTTTGGACAAACAGTAACGTCACAAAAAGGGGGGGGGGTCGGTACT
AAAATCTCAGATATCATGACCTTTAGTGATGTGCTGGTACTGCAAAAAAG
CTCAAAAAGTGTTTTAGTACCATGTGTACTAAAATACCAAAAAAGTCGGC
CAATCAAAGAAATTGTGTGAAAAATTTTAGTATGCTTAATAACGTTATGC
TAATATAAAAAAGCATGTAAGGACATTGAAAAGCAAGTCTTGTTTATTTT
ACATAATTGACTTTACAGAATCGGAAAAATCTAATAAACCAGAAGAAAAA
AAGGCAAAAATAGAGGCAAGCAACATAGCTGGTCGAGAGCTAATGGAAAA
GGTTGACGGTAAGTATTGACATTAAGATTTTGTATTCAAATACAAATTTC
TGACAAAGGTCAACAGTAAAAATAACCATATTACTTTCAGGAGTTATGTT
GATCATATACTATTATCTTATACTTAAGCTTATTGGAATTTGTTCAAAAT
ATGTTCATAATATACTGTATACTATTATGTTATACTCGAGCTTATTGGAC
CTTTCTCAAAAAACAAAAAAAAACTAAACTGAACGGAATTCTGTCTGCAG
ACAGAAAGTTGCATCACTGCATCATAACTGACTTTAACAGACATTTTTCA
TTTCCCATTTCAGAAAATGCAAATAATGATTTGTCTGAAGAACTCTTGGA
CAATTTTCTTCAAAAGACACAAGACAAGTATGGTAAGTGTTAGCTAATAT
CTTCAGACAATCTTCTCCTGTATTGACATATATCAAAATGAATATTTTAG
TAATAAAAAATTTATTCTGTTCTTTATTGCAGGACCCAACATCACGAAAG
GCATATTTTCACCTTTGAAATCAAGTGAAGGGAGTCAAAGCAAAAACAAT
GGTAAGAAAACAAAATTATTGCTTTTAAGAGAAATTTGAAATTAAATCTT
AAATATATTTTCAGAATGTTAATTAATTCCCTTTTGTACTTGATATTCTA
CAGGAAATTCTGATCACAACGCAACACAACCTTGTTTCTCGCCTGATGAA
AGTCCAAAAATAACAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031482XLOC_031482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049652-exon-scaffold_164-1575043694:109385..109408TCONS_00049652-exon-scaffold_164-1575043694:109385..109408Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1575043694:108934..108969TCONS_00049652-exon-scaffold_164-1575043694:108934..108969Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1575043694:108507..108575TCONS_00049652-exon-scaffold_164-1575043694:108507..108575Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1575043694:108001..108090TCONS_00049652-exon-scaffold_164-1575043694:108001..108090Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1575043694:107632..107695TCONS_00049652-exon-scaffold_164-1575043694:107632..107695Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1575043694:107458..107526TCONS_00049652-exon-scaffold_164-1575043694:107458..107526Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1575043694:107288..107355TCONS_00049652-exon-scaffold_164-1575043694:107288..107355Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:109385..109408TCONS_00049652-exon-scaffold_164-1510915933:109385..109408Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:108934..108969TCONS_00049652-exon-scaffold_164-1510915933:108934..108969Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:108507..108575TCONS_00049652-exon-scaffold_164-1510915933:108507..108575Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:108001..108090TCONS_00049652-exon-scaffold_164-1510915933:108001..108090Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:107632..107695TCONS_00049652-exon-scaffold_164-1510915933:107632..107695Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:107458..107526TCONS_00049652-exon-scaffold_164-1510915933:107458..107526Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1510915933:107288..107355TCONS_00049652-exon-scaffold_164-1510915933:107288..107355Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:109385..109408TCONS_00049652-exon-scaffold_164-1491911889:109385..109408Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:108934..108969TCONS_00049652-exon-scaffold_164-1491911889:108934..108969Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:108507..108575TCONS_00049652-exon-scaffold_164-1491911889:108507..108575Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:108001..108090TCONS_00049652-exon-scaffold_164-1491911889:108001..108090Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:107632..107695TCONS_00049652-exon-scaffold_164-1491911889:107632..107695Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:107458..107526TCONS_00049652-exon-scaffold_164-1491911889:107458..107526Clytia hemisphaericaexon
TCONS_00049652-exon-scaffold_164-1491911889:107288..107355TCONS_00049652-exon-scaffold_164-1491911889:107288..107355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:107288..109408 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.852574	0	0	0.296066	0	0.242205	0	0	2.73257	2.48762	2.27422	4.21589	1.68776	0	0.610169	0.557016	0.363059	1.21346	3.32492	2.04975	1.8559	0.626451	0	0.58719	9.68014e-07	0	0	0	0	0.801708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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