TCONS_00049653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049653
Unique NameTCONS_00049653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049653 ID=TCONS_00049653|Name=TCONS_00049653|organism=Clytia hemisphaerica|type=transcript|length=403bp
ACATGATAAACTTTACTACCCTGCAGTGTTGACGAAAATTGGTGTGAGGA
AAAGAAAGTCAGAAACAacagAGAAGGAAGACGATCAAGATGAACATAAC
ACGGAAAGAGACATGGAAGAAAAAGAACCGTCATCAACAGAAAAGAAAAG
TGGGAAAagcaaaattgttaaaaaaaAATCGGAAAAATCTAATAAAccag
aagaaaaaaaggcaaaaatagaGGCAAGCAACATAGCTGGTCGAGAGCTA
ATGGAAAAGGTTGACGGACCCAACATCACGAAAGGCATATTTTCACCTTT
GAAATCAAGTGAAGGGAGTCAAAGCAAAAACAATGGAAATTCTGATCACA
ACGCAACACAACCTTGTTTCTCGCCTGATGAAAGTccaaaaataacaaac
aaa
Run BLAST on NCBI

transcript from alignment at scaffold_164:107288..109455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049653 ID=TCONS_00049653|Name=TCONS_00049653|organism=Clytia hemisphaerica|type=transcript|length=2168bp|location=Sequence derived from alignment at scaffold_164:107288..109455- (Clytia hemisphaerica)
ACATGATAAACTTTACTACCCTGCAGTGTTGACGAAAATTGGTGTGAGGA
AAAGAAAGTCAGAAACAACAGGTTGTTTTTTTTCTTTCATTTTGAAAGAA
TTCTCGAGTAAGTTCTAACACAATAAGAATTCACTGTATTTGATCCAAAA
TCTCAGCCGTATGCTGAATAACATGTTTGAACTGTTCGTCGGTACACCAG
AGGCTCGTGTATATTATTCCAAAGATTTTTCACTGCGGTCAACTTCAGCA
AATCCATCTACAGTCCAAGTCAAAACAGAGATTTTATTAACGAAATGTCA
TCGTGTCGAATAATGCATATTGCGATTATTTCGCTGGAGGAAGGGTGCAG
AATTTTGATAGTCTGTACAAGCGAATCGATTTGGATAAGGGATAAGTCAT
GATTCCAGCCCTGCCAACTGTTGAAATTTGAACTGCAAAGCGAGAAAAAA
ATGAAAAATAGATAAAAAATATTACTTTATTTATAGAGAAGGAAGACGAT
CAAGATGAACATAACACGGAAAGTAAGCAGTTAAAGAGCTATTTTTTCTT
AGAGTCTTCAGGGTGTGATACCTCACCCTCTTTGATTTTGATAAAATTTG
GTCCAAATGATATATCATACAAGAAAATAAGACCTTTTGTAGAGAATGAG
AAAAAATCAAATAGTCTCCAATAATTTTATGTAAACTTGACCCGATATTC
AGTTAGTACTAACTGTACTAAGTGCACCAAGGGTGGTGGTGGTGTTGTTA
CTAACTTCTTGCAAAAAAGCAGTCAGTAGGCATGATGTCTTGTACTAACT
GATTCACCCCCTGATTCTTTCAATTAAGTATATCATTAAATAAAAATAGT
TGACTGTTGACACTGTTAATTTTTCTACAGGAGACATGGAAGAAAAAGAA
CCGTCATCAACAGAAAAGAAAAGTGGGAAAAGCAAAATTGTTAAAAAAAG
TAATCTTAGTTTTATTTTTTCTTCATGCTATTTTTAATGCTTTCAATGTA
TCTTTTCTTTTAGTTTTTTTGGGAAACAAGCTCTCAGTCATGCTTAGGGA
TATTTTAGACTCTAATTATGTTTTCTATTTAGTCTCTAATTTTTCATGAG
GTTTTGGACAAACAGTAACGTCACAAAAAGGGGGGGGGGTCGGTACTAAA
ATCTCAGATATCATGACCTTTAGTGATGTGCTGGTACTGCAAAAAAGCTC
AAAAAGTGTTTTAGTACCATGTGTACTAAAATACCAAAAAAGTCGGCCAA
TCAAAGAAATTGTGTGAAAAATTTTAGTATGCTTAATAACGTTATGCTAA
TATAAAAAAGCATGTAAGGACATTGAAAAGCAAGTCTTGTTTATTTTACA
TAATTGACTTTACAGAATCGGAAAAATCTAATAAACCAGAAGAAAAAAAG
GCAAAAATAGAGGCAAGCAACATAGCTGGTCGAGAGCTAATGGAAAAGGT
TGACGGTAAGTATTGACATTAAGATTTTGTATTCAAATACAAATTTCTGA
CAAAGGTCAACAGTAAAAATAACCATATTACTTTCAGGAGTTATGTTGAT
CATATACTATTATCTTATACTTAAGCTTATTGGAATTTGTTCAAAATATG
TTCATAATATACTGTATACTATTATGTTATACTCGAGCTTATTGGACCTT
TCTCAAAAAACAAAAAAAAACTAAACTGAACGGAATTCTGTCTGCAGACA
GAAAGTTGCATCACTGCATCATAACTGACTTTAACAGACATTTTTCATTT
CCCATTTCAGAAAATGCAAATAATGATTTGTCTGAAGAACTCTTGGACAA
TTTTCTTCAAAAGACACAAGACAAGTATGGTAAGTGTTAGCTAATATCTT
CAGACAATCTTCTCCTGTATTGACATATATCAAAATGAATATTTTAGTAA
TAAAAAATTTATTCTGTTCTTTATTGCAGGACCCAACATCACGAAAGGCA
TATTTTCACCTTTGAAATCAAGTGAAGGGAGTCAAAGCAAAAACAATGGT
AAGAAAACAAAATTATTGCTTTTAAGAGAAATTTGAAATTAAATCTTAAA
TATATTTTCAGAATGTTAATTAATTCCCTTTTGTACTTGATATTCTACAG
GAAATTCTGATCACAACGCAACACAACCTTGTTTCTCGCCTGATGAAAGT
CCAAAAATAACAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031482XLOC_031482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049653-exon-scaffold_164-1575043694:109385..109455TCONS_00049653-exon-scaffold_164-1575043694:109385..109455Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1575043694:108934..108969TCONS_00049653-exon-scaffold_164-1575043694:108934..108969Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1575043694:108507..108575TCONS_00049653-exon-scaffold_164-1575043694:108507..108575Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1575043694:108001..108090TCONS_00049653-exon-scaffold_164-1575043694:108001..108090Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1575043694:107458..107526TCONS_00049653-exon-scaffold_164-1575043694:107458..107526Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1575043694:107288..107355TCONS_00049653-exon-scaffold_164-1575043694:107288..107355Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1510915933:109385..109455TCONS_00049653-exon-scaffold_164-1510915933:109385..109455Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1510915933:108934..108969TCONS_00049653-exon-scaffold_164-1510915933:108934..108969Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1510915933:108507..108575TCONS_00049653-exon-scaffold_164-1510915933:108507..108575Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1510915933:108001..108090TCONS_00049653-exon-scaffold_164-1510915933:108001..108090Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1510915933:107458..107526TCONS_00049653-exon-scaffold_164-1510915933:107458..107526Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1510915933:107288..107355TCONS_00049653-exon-scaffold_164-1510915933:107288..107355Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1491911889:109385..109455TCONS_00049653-exon-scaffold_164-1491911889:109385..109455Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1491911889:108934..108969TCONS_00049653-exon-scaffold_164-1491911889:108934..108969Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1491911889:108507..108575TCONS_00049653-exon-scaffold_164-1491911889:108507..108575Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1491911889:108001..108090TCONS_00049653-exon-scaffold_164-1491911889:108001..108090Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1491911889:107458..107526TCONS_00049653-exon-scaffold_164-1491911889:107458..107526Clytia hemisphaericaexon
TCONS_00049653-exon-scaffold_164-1491911889:107288..107355TCONS_00049653-exon-scaffold_164-1491911889:107288..107355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:107288..109455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.477756	0	0.508345	0	4.20931	1.52156	4.15393	2.20983	0.000241653	1.07564	4.0304	0	1.1829	0	2.00341	0.700847	1.38423	0.675724	2.04997	0.318855	0	2.32692	0.62095	0.184469	4.69935	1.05104	1.64298	0.621969	0.68872	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top