TCONS_00049655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049655
Unique NameTCONS_00049655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049655 ID=TCONS_00049655|Name=TCONS_00049655|organism=Clytia hemisphaerica|type=transcript|length=1115bp
CATTTCATCATCGATGGCATCAAATAAATGGTCTTCTTTATCTGACTCAT
CAAAGTTTTCCACAATGGAACAATCCTTGAAATAATCACAATCTTCCAGT
CTGTTCTTGTAAATTTCATCCCTGTGTCTATATATCGTACCTTTTCCTTG
GCTCGCCATCTTAATGATGGCAGTGCAAGTAATAAATAATTATGACAAAC
AGAAACACAACAACAATTTCCTCACCTGGGTGGAGAACAGAACAATCTTT
ATATGTACACAAATGACCGCTATCCGTTCTCCTTCCAATTTGTTAGCTTG
TTTACGCAATGGAACGACTTCAGCGTTCGAATTATCAAATCGAacgtttt
tgttcgaaaattaTTTCGTCCACAAACGCCCCAAgagattttattttcga
aaaaagcgaGTTTGAAGGTgcatcttctataagaataactGGTCAGGATT
TTTTCTTGCTACTGTGCTTACAAAACAAAATGGAACGCCCATCGAAAGAC
AGAAAACCTTCATCTAAATTTGCACAAGGAGATCAAATTGGCGCTGATAA
CGGTCCCCTACTGACCATACTATTTACAGTGGAAGAGGCAAATGGAAACT
GTTTAACTATGGTGTTACCTTATGGCACGTTATGCCCAAAAGACATCGTG
ACAGGGGAACTATTGGAGTCATCAAAACTCAAGAAGAACATGAAACTACT
ATGTCTATACCCACATGATAAACTTTACTATCCTGCAGTGTTGACGAAAA
TTGGTGGGAGGAAAAGAAAGTCAGAAACAACagAGAAGGAAGACGATCAA
GATGAACATAACACGGAAAGAGACATGGAAGAAAAAGAACCGTCATCAAC
AGAAAAGAAAAGTGGGAAAagcaaaattgttaaaaaaaAATCGGAAAAAT
CTAATAAAccagaagaaaaaaaggcaaaaatagaGGCAAGCAACATAGCT
GGTCGAGAGCTAATGGAAAAGGTTGACGGACCCAACATCACGAAAGGCAT
ATTTTCACCTTTGAAATCAAGTGAAGGGAGTCAAAGCAAAAACAATGGAA
ATTCTGATCACAACGCAACACAACCTTGTTTCTCGCCTGATGAAAGTcca
aaaataacaaacaaa
Run BLAST on NCBI

transcript from alignment at scaffold_164:107288..111802-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049655 ID=TCONS_00049655|Name=TCONS_00049655|organism=Clytia hemisphaerica|type=transcript|length=4515bp|location=Sequence derived from alignment at scaffold_164:107288..111802- (Clytia hemisphaerica)
CATTTCATCATCGATGGCATCAAATAAATGGTCTTCTTTATCTGACTCAT
CAAAGTTTTCCACAATGGAACAATCCTTGAAATAATCACAATCTTCCAGT
CTGTTCTTGTAAATTTCATCCCTGTGTCTATATATCGTACCTTTTCCTTG
GCTCGCCATCTTAATGATGGCAGTGCAAGTAATAAATAATTATGACAAAC
AGAAACACAACAACAATTTCCTCACCTGGGTGGAGAACAGAACAATCTTT
ATATGTACACAAATGACCGCTATCCGTTCTCCTTCCAATTTGTTAGCTTG
TTTACGCAATGGAACGACTTCAGCGTTCGAATTATCAAATCGAACGTTTT
TGTTCGAAAATTATTTCGTCCACAAACGCCCCAAGAGATTTTATTTTCGA
AAAAAGCGAGTTTGAAGGTGCATCTTCTATAAGAATAACTGGTCAGGATT
TTTTCTTGCTACTGTGCTTACAAAACAAAATGGAACGCCCATCGAAAGAC
AGAAAACCTTCATCTAAATTTGCACAAGGAGATCAAATTGGTAAGTAAAG
TTTTACGTTTATATTCTGCAAATGTTTTCCTATACTGTATGCACAACACC
TATGTCACAGACCCACTGGGACCATTAAACAATAAGATTTCTTTACACAT
CGGGATTTTTATCCCCATTGAAGAGAGAATTTTACCTGGGTGTGAGACAG
GGGTGTTGTACAAAACAAGACTTGTCTTGTAACTTCTGGTTTTGATGATA
AATTTTAGGAGGGTGATAAGAATAGAAAGCCATAGTAAATACCACGGTCT
GCAGTAAAGTCCATAGAATGAATGTTTGTAATTGTATTTAAGTCAAAATT
GCGACTTTTACTTTCTTAATTTTTTTCTGACTAAACGTTTTTTTTTTAAG
AAACATGAGACTCAACTCAGAATGCCTAAAAATTAAAAAACATGCTGAGG
CTGAGAAAATGACATTTTTAATTCGGTTTTTAAGAGTTTTCCAATCAAAT
GTTTTTTCTTTACATGAAAATAAAATTGTAAATAAACACTACTGTATGTC
AAAAAATTCAGAAACATAAAACTAGTTTCTCAAAAAAAAAAACGTGTAGT
TTTCCTTCGTATTTAGGCGCTGATAACGGTCCCCTACTGACCATACTATT
TACAGTGGAAGAGGCAAATGGAAACTGTTTAACTATGGTGTTACCTTATG
GCACGTTATGCCCAAAAGACATCGTGACAGGGGAACTATTGGAGTCATCA
AAACTCAAGAAGAACATGAAACTACTATGTCTATACCCACATGATAAACT
TTACTATCCTGCAGTGTTGACGAAAATTGGTGGGAGGAAAAGAAAGTCAG
AAACAACAGGTTATTTTTTTTCTTTTATTTTGAAAGAATTCTCGAGTAAG
TTCTAAGTCTGTCTCAAAATAATTTGCAGCTGAATACAAAAATGGCTGTA
ACTTTTGATAGAATTCGAATCAAGTTGCGATTAAGTGCTTGTTAAAAAGA
TATTCGTAAGTGGAATATTATCAAGTAAGAAAATTGAGAAAAAGAGGAAA
ATGAAAAATGAAGAAGAAAAAAATCAACTTCTTGTAGAAATGTGGTATAA
TTACCATTTTCACAGGAGCGATTCTTCAATCTTAGATCATCATCACTGTC
AAAAAAATTTTCAAAAATATTCATAATCAAATGATATCAAACAAAGTTTA
TTGCTGGGCGACTCTATAAAATAGTAAAAACTGGTAAAAAACGACAAAAA
AAACAGCCTTTTGTCGATCAACCAGCAATAAACTTAGTTTGATATCTTTT
GATTGAATATTTTTGAAAAATTTTTTCACATTGATGATGATCTAAGATTG
AAGAGNATTGAATGAATATTTTTGAAAAATTTTTTCACATTGATGATGAT
CTAAGATTGAAGAGTCACTCCTGTGAAAATGGTAATTATACCACATTTCT
ACAAAAAGTTTATTTTTTTCTTCTTCATTTTTCATTTTCATTTTCCTTTT
TTTCTCAATNTGAGAAAATGACATTTTTAATTCGGTTTTTAAGAGTTTTC
CAATCAAATGTTTTTTCTTTACATGAAAATAAAATTGTAAATAAACACTA
CTGTATGTCAAAAAATTCAGAAACATAAAACTAGTTTCTCAAAAAAAAAA
ACGTGTAGTTTTCCTTCGTATTTAGGCGCTGATAACGGTCCCCTACTGAC
CATACTATTTACAGTGGAAGAGGCAAATGGAAACTGTTTAACTATGGTGT
TACCTTATGGCACGCTATGCCCAAAAGACATCGTGACAGGGGAACTATTG
GAGTCATCAAAACTCAAGACGAGCATGAAAGTACTGTGTCTATACCCACA
TGATAAACTTTACTACCCTGCAGTGTTGACGAAAATTGGTGTGAGGAAAA
GAAAGTCAGAAACAACAGGTTGTTTTTTTTCTTTCATTTTGAAAGAATTC
TCGAGTAAGTTCTAACACAATAAGAATTCACTGTATTTGATCCAAAATCT
CAGCCGTATGCTGAATAACATGTTTGAACTGTTCGTCGGTACACCAGAGG
CTCGTGTATATTATTCCAAAGATTTTTCACTGCGGTCAACTTCAGCAAAT
CCATCTACAGTCCAAGTCAAAACAGAGATTTTATTAACGAAATGTCATCG
TGTCGAATAATGCATATTGCGATTATTTCGCTGGAGGAAGGGTGCAGAAT
TTTGATAGTCTGTACAAGCGAATCGATTTGGATAAGGGATAAGTCATGAT
TCCAGCCCTGCCAACTGTTGAAATTTGAACTGCAAAGCGAGAAAAAAATG
AAAAATAGATAAAAAATATTACTTTATTTATAGAGAAGGAAGACGATCAA
GATGAACATAACACGGAAAGTAAGCAGTTAAAGAGCTATTTTTTCTTAGA
GTCTTCAGGGTGTGATACCTCACCCTCTTTGATTTTGATAAAATTTGGTC
CAAATGATATATCATACAAGAAAATAAGACCTTTTGTAGAGAATGAGAAA
AAATCAAATAGTCTCCAATAATTTTATGTAAACTTGACCCGATATTCAGT
TAGTACTAACTGTACTAAGTGCACCAAGGGTGGTGGTGGTGTTGTTACTA
ACTTCTTGCAAAAAAGCAGTCAGTAGGCATGATGTCTTGTACTAACTGAT
TCACCCCCTGATTCTTTCAATTAAGTATATCATTAAATAAAAATAGTTGA
CTGTTGACACTGTTAATTTTTCTACAGGAGACATGGAAGAAAAAGAACCG
TCATCAACAGAAAAGAAAAGTGGGAAAAGCAAAATTGTTAAAAAAAGTAA
TCTTAGTTTTATTTTTTCTTCATGCTATTTTTAATGCTTTCAATGTATCT
TTTCTTTTAGTTTTTTTGGGAAACAAGCTCTCAGTCATGCTTAGGGATAT
TTTAGACTCTAATTATGTTTTCTATTTAGTCTCTAATTTTTCATGAGGTT
TTGGACAAACAGTAACGTCACAAAAAGGGGGGGGGGTCGGTACTAAAATC
TCAGATATCATGACCTTTAGTGATGTGCTGGTACTGCAAAAAAGCTCAAA
AAGTGTTTTAGTACCATGTGTACTAAAATACCAAAAAAGTCGGCCAATCA
AAGAAATTGTGTGAAAAATTTTAGTATGCTTAATAACGTTATGCTAATAT
AAAAAAGCATGTAAGGACATTGAAAAGCAAGTCTTGTTTATTTTACATAA
TTGACTTTACAGAATCGGAAAAATCTAATAAACCAGAAGAAAAAAAGGCA
AAAATAGAGGCAAGCAACATAGCTGGTCGAGAGCTAATGGAAAAGGTTGA
CGGTAAGTATTGACATTAAGATTTTGTATTCAAATACAAATTTCTGACAA
AGGTCAACAGTAAAAATAACCATATTACTTTCAGGAGTTATGTTGATCAT
ATACTATTATCTTATACTTAAGCTTATTGGAATTTGTTCAAAATATGTTC
ATAATATACTGTATACTATTATGTTATACTCGAGCTTATTGGACCTTTCT
CAAAAAACAAAAAAAAACTAAACTGAACGGAATTCTGTCTGCAGACAGAA
AGTTGCATCACTGCATCATAACTGACTTTAACAGACATTTTTCATTTCCC
ATTTCAGAAAATGCAAATAATGATTTGTCTGAAGAACTCTTGGACAATTT
TCTTCAAAAGACACAAGACAAGTATGGTAAGTGTTAGCTAATATCTTCAG
ACAATCTTCTCCTGTATTGACATATATCAAAATGAATATTTTAGTAATAA
AAAATTTATTCTGTTCTTTATTGCAGGACCCAACATCACGAAAGGCATAT
TTTCACCTTTGAAATCAAGTGAAGGGAGTCAAAGCAAAAACAATGGTAAG
AAAACAAAATTATTGCTTTTAAGAGAAATTTGAAATTAAATCTTAAATAT
ATTTTCAGAATGTTAATTAATTCCCTTTTGTACTTGATATTCTACAGGAA
ATTCTGATCACAACGCAACACAACCTTGTTTCTCGCCTGATGAAAGTCCA
AAAATAACAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031482XLOC_031482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049655-exon-scaffold_164-1575043694:111263..111802TCONS_00049655-exon-scaffold_164-1575043694:111263..111802Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1575043694:110444..110686TCONS_00049655-exon-scaffold_164-1575043694:110444..110686Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1575043694:108934..108969TCONS_00049655-exon-scaffold_164-1575043694:108934..108969Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1575043694:108507..108575TCONS_00049655-exon-scaffold_164-1575043694:108507..108575Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1575043694:108001..108090TCONS_00049655-exon-scaffold_164-1575043694:108001..108090Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1575043694:107458..107526TCONS_00049655-exon-scaffold_164-1575043694:107458..107526Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1575043694:107288..107355TCONS_00049655-exon-scaffold_164-1575043694:107288..107355Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:111263..111802TCONS_00049655-exon-scaffold_164-1510915933:111263..111802Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:110444..110686TCONS_00049655-exon-scaffold_164-1510915933:110444..110686Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:108934..108969TCONS_00049655-exon-scaffold_164-1510915933:108934..108969Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:108507..108575TCONS_00049655-exon-scaffold_164-1510915933:108507..108575Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:108001..108090TCONS_00049655-exon-scaffold_164-1510915933:108001..108090Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:107458..107526TCONS_00049655-exon-scaffold_164-1510915933:107458..107526Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1510915933:107288..107355TCONS_00049655-exon-scaffold_164-1510915933:107288..107355Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:111263..111802TCONS_00049655-exon-scaffold_164-1491911889:111263..111802Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:110444..110686TCONS_00049655-exon-scaffold_164-1491911889:110444..110686Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:108934..108969TCONS_00049655-exon-scaffold_164-1491911889:108934..108969Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:108507..108575TCONS_00049655-exon-scaffold_164-1491911889:108507..108575Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:108001..108090TCONS_00049655-exon-scaffold_164-1491911889:108001..108090Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:107458..107526TCONS_00049655-exon-scaffold_164-1491911889:107458..107526Clytia hemisphaericaexon
TCONS_00049655-exon-scaffold_164-1491911889:107288..107355TCONS_00049655-exon-scaffold_164-1491911889:107288..107355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:107288..111802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0579598	0.198658	0.112836	0	0.88947	1.41803	1.99509	1.70653	4.76119	4.04501	4.24215	3.31735	2.45454	2.27767	1.69434	0	2.38536	1.94372	3.85936	3.35112	1.6127	1.64889	0.637135	0.664627	1.32642	1.69954	1.11536	0.983725	0.529142	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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