TCONS_00049669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049669
Unique NameTCONS_00049669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049669 ID=TCONS_00049669|Name=TCONS_00049669|organism=Clytia hemisphaerica|type=transcript|length=556bp
ttggaatgtttacttaagaaactcttctaaagaggttttcgcggttttag
cctctacaaaggagagttttagaaaatataaaatcgttctgtaaattaca
caaccCTTAGGAAAAAAAACAGTCTTCAAGTAGTCTGCAATAAGTCCACA
TATAGTCCACATAATCCACAAGTAGTCCACGCGGACTTGCAGACTAATTT
TTCAATCCGCAGTTTTAATCTGCAGTTTAAATTTCAATCCACAGCTTTGA
TCTGCAGCTGAAAATGCTGTCTGCAGTCAAGTCTGCATCTAAAATGCAAA
CTGCAGTTTAAATCTGCAGCCAAAATATAATCCGCAGTTTAAATATGCAG
TCAAAATGTAATCTGCAGATTCTAATCAGAAATAAAAATGCAATCTACGT
TTCAATCTGTTGCTAAAATGCAATCTGCAGAAGATTAATCCACATAAGTT
TCAAAtatgcaaatatttttttttctttataattcaAGAATTTACGATGG
GACACATAcgagaaatttcagaaaaaaagtaGGCAGTAGGAGCCCCATCA
GTGGTC
Run BLAST on NCBI

transcript from alignment at scaffold_164:114068..114623

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049669 ID=TCONS_00049669|Name=TCONS_00049669|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at scaffold_164:114068..114623 (Clytia hemisphaerica)
GACCACTGATGGGGCTCCTACTGCCtactttttttctgaaatttctcgTA
TGTGTCCCATCGTAAATTCTtgaattataaagaaaaaaaaatatttgcat
aTTTGAAACTTATGTGGATTAATCTTCTGCAGATTGCATTTTAGCAACAG
ATTGAAACGTAGATTGCATTTTTATTTCTGATTAGAATCTGCAGATTACA
TTTTGACTGCATATTTAAACTGCGGATTATATTTTGGCTGCAGATTTAAA
CTGCAGTTTGCATTTTAGATGCAGACTTGACTGCAGACAGCATTTTCAGC
TGCAGATCAAAGCTGTGGATTGAAATTTAAACTGCAGATTAAAACTGCGG
ATTGAAAAATTAGTCTGCAAGTCCGCGTGGACTACTTGTGGATTATGTGG
ACTATATGTGGACTTATTGCAGACTACTTGAAGACTGTTTTTTTTCCTAA
Gggttgtgtaatttacagaacgattttatattttctaaaactctcctttg
tagaggctaaaaccgcgaaaacctctttagaagagtttcttaagtaaaca
ttccaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031491XLOC_031491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049669-exon-scaffold_164-1491911889:114068..114623TCONS_00049669-exon-scaffold_164-1491911889:114068..114623Clytia hemisphaericaexon
TCONS_00049669-exon-scaffold_164-1510915933:114068..114623TCONS_00049669-exon-scaffold_164-1510915933:114068..114623Clytia hemisphaericaexon
TCONS_00049669-exon-scaffold_164-1575043694:114068..114623TCONS_00049669-exon-scaffold_164-1575043694:114068..114623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:114068..114623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138689	0.28168	0.494107	0	1.14938	0.113046	0.998603	1.16224	2.20742	3.14675	0.859844	2.03795	1.36966	0.0724636	0.062384	0.258734	0.632067	0.730195	0.352657	1.42372	0.847239	0.747765	0.124866	0.43932	0.112567	0	0.305415	0.322731	0.71163	0.380798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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