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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049671 ID=TCONS_00049671|Name=TCONS_00049671|organism=Clytia hemisphaerica|type=transcript|length=1005bp
GTGCAAAACTCATCCAAGACACCATCAATCTCAACACCAACTCTCTTCAA
GTCCTCGTTTATTCTCTTTGAAAGGTAGGAAGCTTTACTCACTGCCTCTT
TCTTAACCTTTGCAGTGTTAGTAAGTCTTTCAATCAATTCCTCTCTAGAA
AGAAACAGGAAGTTGCAGGCAGAGGAATCACTTGTTCTAGCTTTTTTCTT
TGCTGGCTCTTCATCACTGGGAAGACGAGAACGGGCTCTCCACAAGTTAT
TTTTGGCGAAATTCCTACAGGTGTCGCACGATTTACGCTGACCAACAGGA
TTGAAGAAGAGCTCACAATTTTCTTTCCGAAAAATAGTGTAAAGTTCCTT
TTGCTGTAACACCTCGTGTGCTTCCGTTTCCACACATACTTCCGATTGAA
AAAATGGGGGTCGAATTTCTAACTTCCCCTGCAAGACATCTTCAAACCCA
TCTATACCTTCACAGAGGATACGAGAAGCAAAAAAGTCTTTCAGCGTTGA
CAAATTTCCATCGTTCAGGTTAACCGGAAGACCATTTTGCAACAGCGGAA
gttcaaaatgtttcaaaactACACATTTCCAGGAGTAATTTTCACAAACA
GTGATGGAAACATGAATTGGTTGCTCTTTGACATACAATTTAAATGATTT
GTCGGACACACATTTGACAAATTTTAGATCTTCCATAACTCTATCAAGTT
CTCTGGTATGTCGAGGTTTTGATTTACTGCTTGAAGATAATTCTGTAGAT
TCTGTTTCTGATGTCAATGGGAAATATAACAAGCGCTCAGCAGAATGGGC
TTGAAAAGAAACAGATTGAATAGTTTTAGTTTTGCCTTCTTtcttaattt
tgtaaaaattgtgaTTACATACCTTGCAAAACTTCTTTGATATATATTAG
GATCCTCCTCAACGACCATTATACTGCAACAATTTATTAACTCAAATGCA
TACTCTGTAAccctttttggatttttgtatctTGAGTCGGTTTTAATGAT
TTTAC Run BLAST on NCBI protein sequence of TCONS_00049671-protein >TCONS_00049671-protein ID=TCONS_00049671-protein|Name=TCONS_00049671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MEDLKFVKCVSDKSFKLYVKEQPIHVSITVCENYSWKCVVLKHFELPLLQ
NGLPVNLNDGNLSTLKDFFASRILCEGIDGFEDVLQGKLEIRPPFFQSEV
CVETEAHEVLQQKELYTIFRKENCELFFNPVGQRKSCDTCRNFAKNNLWR
ARSRLPSDEEPAKKKARTSDSSACNFLFLSREELIERLTNTAKVKKEAVS
KASYLSKRINEDLKRVGVEIDGVLDEFC Run BLAST on NCBI transcript from alignment at scaffold_164:157144..158148 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049671 ID=TCONS_00049671|Name=TCONS_00049671|organism=Clytia hemisphaerica|type=transcript|length=1005bp|location=Sequence derived from alignment at scaffold_164:157144..158148 (Clytia hemisphaerica)
GTAAAATCATTAAAACCGACTCAagatacaaaaatccaaaaagggTTACA
GAGTATGCATTTGAGTTAATAAATTGTTGCAGTATAATGGTCGTTGAGGA
GGATCCTAATATATATCAAAGAAGTTTTGCAAGGTATGTAAtcacaattt
ttacaaaattaagaAAGAAGGCAAAACTAAAACTATTCAATCTGTTTCTT
TTCAAGCCCATTCTGCTGAGCGCTTGTTATATTTCCCATTGACATCAGAA
ACAGAATCTACAGAATTATCTTCAAGCAGTAAATCAAAACCTCGACATAC
CAGAGAACTTGATAGAGTTATGGAAGATCTAAAATTTGTCAAATGTGTGT
CCGACAAATCATTTAAATTGTATGTCAAAGAGCAACCAATTCATGTTTCC
ATCACTGTTTGTGAAAATTACTCCTGGAAATGTGTagttttgaaacattt
tgaacTTCCGCTGTTGCAAAATGGTCTTCCGGTTAACCTGAACGATGGAA
ATTTGTCAACGCTGAAAGACTTTTTTGCTTCTCGTATCCTCTGTGAAGGT
ATAGATGGGTTTGAAGATGTCTTGCAGGGGAAGTTAGAAATTCGACCCCC
ATTTTTTCAATCGGAAGTATGTGTGGAAACGGAAGCACACGAGGTGTTAC
AGCAAAAGGAACTTTACACTATTTTTCGGAAAGAAAATTGTGAGCTCTTC
TTCAATCCTGTTGGTCAGCGTAAATCGTGCGACACCTGTAGGAATTTCGC
CAAAAATAACTTGTGGAGAGCCCGTTCTCGTCTTCCCAGTGATGAAGAGC
CAGCAAAGAAAAAAGCTAGAACAAGTGATTCCTCTGCCTGCAACTTCCTG
TTTCTTTCTAGAGAGGAATTGATTGAAAGACTTACTAACACTGCAAAGGT
TAAGAAAGAGGCAGTGAGTAAAGCTTCCTACCTTTCAAAGAGAATAAACG
AGGACTTGAAGAGAGTTGGTGTTGAGATTGATGGTGTCTTGGATGAGTTT
TGCAC Coding sequence (CDS) from alignment at scaffold_164:157144..158148 >TCONS_00049671 ID=TCONS_00049671|Name=TCONS_00049671|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_164:157144..158148 (Clytia hemisphaerica)
ATGGAAGATCTAAAATTTGTCAAATGTGTGTCCGACAAATCATTTAAATT
GTATGTCAAAGAGCAACCAATTCATGTTTCCATCACTGTTTGTGAAAATT
ACTCCTGGAAATGTGTagttttgaaacattttgaacTTCCGCTGTTGCAA
AATGGTCTTCCGGTTAACCTGAACGATGGAAATTTGTCAACGCTGAAAGA
CTTTTTTGCTTCTCGTATCCTCTGTGAAGGTATAGATGGGTTTGAAGATG
TCTTGCAGGGGAAGTTAGAAATTCGACCCCCATTTTTTCAATCGGAAGTA
TGTGTGGAAACGGAAGCACACGAGGTGTTACAGCAAAAGGAACTTTACAC
TATTTTTCGGAAAGAAAATTGTGAGCTCTTCTTCAATCCTGTTGGTCAGC
GTAAATCGTGCGACACCTGTAGGAATTTCGCCAAAAATAACTTGTGGAGA
GCCCGTTCTCGTCTTCCCAGTGATGAAGAGCCAGCAAAGAAAAAAGCTAG
AACAAGTGATTCCTCTGCCTGCAACTTCCTGTTTCTTTCTAGAGAGGAAT
TGATTGAAAGACTTACTAACACTGCAAAGGTTAAGAAAGAGGCAGTGAGT
AAAGCTTCCTACCTTTCAAAGAGAATAAACGAGGACTTGAAGAGAGTTGG
TGTTGAGATTGATGGTGTCTTGGATGAGTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049671-exon-scaffold_164-1491911889:157144..158148 | TCONS_00049671-exon-scaffold_164-1491911889:157144..158148 | Clytia hemisphaerica | exon |
| TCONS_00049671-exon-scaffold_164-1510915933:157144..158148 | TCONS_00049671-exon-scaffold_164-1510915933:157144..158148 | Clytia hemisphaerica | exon |
| TCONS_00049671-exon-scaffold_164-1575043694:157144..158148 | TCONS_00049671-exon-scaffold_164-1575043694:157144..158148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_164 | supercontig | scaffold_164:157144..158148 . |
Blast
The following BLAST results are available for this feature:
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