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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049641 ID=TCONS_00049641|Name=TCONS_00049641|organism=Clytia hemisphaerica|type=transcript|length=666bp
CAAAGTCCTTATTAAAGACAGTAAACTGGCTAAACTTGAAGAATTCCAAA
AGCATGTAGCACTATCCTTTGacgaaatgaaaattaaaagtgaTCTTGTT
TATCAAAGatcAACTGGCAAAATGGTTGGATATACTGAATTGGGCAACAT
CAATCAAGAGTTTGAAGAGTATCAGAAGAGCATTGAGGATTCTGACGACG
ATTTTTCAAAGAAGGATTTTGCAACTTATGTTAATGTATATATGGTGCGT
GGAATCTTTACAGATCTGTAACAAGCCTTTGGTTATTATGCAACAAGAGG
AATTACCAAGTCACCAACTATATCCCTGCTCGATGGAGGCTATCCGCGTA
CTCACTGCTATTGGATTTCATGTCCGATCAATGACTTCAGATGGTGCAAC
TTCAAATCGGAAATTTTTTGATATAATTCATGATGGTGATCACATTCACA
AAAGCATAAACCCTtttgaaaagtcaaaacataTCTATGCATTCTCAGAT
GTACCTCATCTTCTCAAAACTACATGCAACTGTTTCGAAAACTCACATTG
GAACAAAAAGACAAGAACATTACATCTTGACAAATAAGATGTTAGCTGGA
AACATGTCCTTGAATTGTACGAAGAAGATCTAGGAATAAATCATGATGGT
TCAGTTAACATGTGTG Run BLAST on NCBI protein sequence of TCONS_00049641-protein >TCONS_00049641-protein ID=TCONS_00049641-protein|Name=TCONS_00049641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MLMYIWCVESLQICNKPLVIMQQEELPSHQLYPCSMEAIRVLTAIGFHVR
SMTSDGATSNRKFFDIIHDGDHIHKSINPFEKSKHIYAFSDVPHLLKTTC
NCFENSHWNKKTRTLHLDK Run BLAST on NCBI transcript from alignment at scaffold_164:160999..162116+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049641 ID=TCONS_00049641|Name=TCONS_00049641|organism=Clytia hemisphaerica|type=transcript|length=1118bp|location=Sequence derived from alignment at scaffold_164:160999..162116+ (Clytia hemisphaerica)
CAAAGTCCTTATTAAAGACAGTAAACTGGCTAAACTTGAAGAATTCCAAA
AGCATGTAGCACTATCCTTTGacgaaatgaaaattaaaagtgaTCTTGTT
TATCAAAGGTATGTACTGCTTTGCaaaaaattttgtcttttttttgtcAA
GTTTTTGCTTGAGGCTCATTGAAGAATCAACATTGCTTCAGTCCACAAAA
CAATTTATTACTAtcacaaattaaaaaattactcCTTTTTTGCTCTAAGT
AGCTTAACAAGCTTTTATATCCATAGCCTCTCTATGCAAGAATTTCTTAt
taatttctttgtaattttcaattaaatttattttttcagatcAACTGGCA
AAATGGTTGGATATACTGAATTGGGCAACATCAATCAAGAGTTTGAAGAG
TATCAGAAGAGCATTGAGGATTCTGACGACGATTTTTCAAAGAAGGATTT
TGCAACTTATGTTAATGTATATATGGTGCGTGGAATCTTTACAGATCTGT
AACAAGCCTTTGGTTATTATGCAACAAGAGGAATTACCAAGTCACCAACT
ATATCCCTGCTCGATGGAGGCTATCCGCGTACTCACTGCTATTGGATTTC
ATGTCCGATCAATGACTTCAGATGGTGCAACTTCAAATCGGAAATTTTTT
GATATAATTCATGATGGTGATCACATTCACAAAAGCATAAACCCTtttga
aaagtcaaaacataTCTATGCATTCTCAGATGTACCTCATCTTCTCAAAA
CTACATGCAACTGTTTCGAAAACTCACATTGGAACAAAAAGACAAGAACA
TTACATGTGAgttaattatggtaatttttaataattttccccTGGTTTaa
tcttttaatattttgtggGATGTTTTTCGTAATAATGGGTTTTAAAATCT
AAGAATAATGACTGAAAGCATTTGCACTGAATAAATCTATTTCTAAATCA
CTCAATTCCTTGATCACCCTGTGGCAGGGTTAATTGGCTTTTgcattata
tatatttttttcttttatatatttAAGCTTGACAAATAAGATGTTAGCTG
GAAACATGTCCTTGAATTGTACGAAGAAGATCTAGGAATAAATCATGATG
GTTCAGTTAACATGTGTG Coding sequence (CDS) from alignment at scaffold_164:160999..162116+ >TCONS_00049641 ID=TCONS_00049641|Name=TCONS_00049641|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_164:160999..162116+ (Clytia hemisphaerica)
ATGTTAATGTATATATGGTGCGTGGAATCTTTACAGATCTGTAACAAGCC
TTTGGTTATTATGCAACAAGAGGAATTACCAAGTCACCAACTATATCCCT
GCTCGATGGAGGCTATCCGCGTACTCACTGCTATTGGATTTCATGTCCGA
TCAATGACTTCAGATGGTGCAACTTCAAATCGGAAATTTTTTGATATAAT
TCATGATGGTGATCACATTCACAAAAGCATAAACCCTtttgaaaagtcaa
aacataTCTATGCATTCTCAGATGTACCTCATCTTCTCAAAACTACATGC
AACTGTTTCGAAAACTCACATTGGAACAAAAAGACAAGAACATTACATCT
TGACAAATAAATGTTAATGTATATATGGTGCGTGGAATCTTTACAGATCT
GTAACAAGCCTTTGGTTATTATGCAACAAGAGGAATTACCAAGTCACCAA
CTATATCCCTGCTCGATGGAGGCTATCCGCGTACTCACTGCTATTGGATT
TCATGTCCGATCAATGACTTCAGATGGTGCAACTTCAAATCGGAAATTTT
TTGATATAATTCATGATGGTGATCACATTCACAAAAGCATAAACCCTttt
gaaaagtcaaaacataTCTATGCATTCTCAGATGTACCTCATCTTCTCAA
AACTACATGCAACTGTTTCGAAAACTCACATTGGAACAAAAAGACAAGAA
CATTACATCTTGACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049641-exon-scaffold_164-1491911889:160999..161106 | TCONS_00049641-exon-scaffold_164-1491911889:160999..161106 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1510915933:160999..161106 | TCONS_00049641-exon-scaffold_164-1510915933:160999..161106 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1575043694:160999..161106 | TCONS_00049641-exon-scaffold_164-1575043694:160999..161106 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1491911889:161338..161804 | TCONS_00049641-exon-scaffold_164-1491911889:161338..161804 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1510915933:161338..161804 | TCONS_00049641-exon-scaffold_164-1510915933:161338..161804 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1575043694:161338..161804 | TCONS_00049641-exon-scaffold_164-1575043694:161338..161804 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1491911889:162026..162116 | TCONS_00049641-exon-scaffold_164-1491911889:162026..162116 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1510915933:162026..162116 | TCONS_00049641-exon-scaffold_164-1510915933:162026..162116 | Clytia hemisphaerica | exon |
| TCONS_00049641-exon-scaffold_164-1575043694:162026..162116 | TCONS_00049641-exon-scaffold_164-1575043694:162026..162116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_164 | supercontig | scaffold_164:160999..162116 + |
Blast
The following BLAST results are available for this feature:
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