TCONS_00049642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049642
Unique NameTCONS_00049642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049642 ID=TCONS_00049642|Name=TCONS_00049642|organism=Clytia hemisphaerica|type=transcript|length=336bp
CTCCACGTTGAGATGAATCTGTGTATATCGTTCGTTAACCTTAATTGGGA
GGTATTCTGTGGAGACATTGCTAAACAGTTGGGCTTCGAGACAGATAAGG
CCAAGGATGTTTTCCGGAAGGACAAAGATCACCACAAAGAATGGCGCTTC
CTGGAGCTTATGTTTTACGCTGGTGTTGACGAACTACTTTCACTCTACGT
TAAATCGTTTGCAACTGACGTTTCACTCACTagtttttggaattggtacc
cgactCAATCTCCAAATCTAAAGTACATGGCGAACATGTGCCTGAATCAT
CTTTTTGCGATGATGTTATTTAGAGTTTCGGTTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_164:173882..174343+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049642 ID=TCONS_00049642|Name=TCONS_00049642|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at scaffold_164:173882..174343+ (Clytia hemisphaerica)
CTCCACGTTGAGATGAATCTGTGTATATCGTTCGTTAACCTTAATTGGGA
GGTATGTAAAGTTCTAAGTAGTTGGGAAATGTTATCTTTGCTCTTTCTGC
CAACTAATTGACACTGTCGATGGCTGGTAGTGCTCTCACCTATAACACTA
ATTGTACTaactttgatgaattttaagGTATTCTGTGGAGACATTGCTAA
ACAGTTGGGCTTCGAGACAGATAAGGCCAAGGATGTTTTCCGGAAGGACA
AAGATCACCACAAAGAATGGCGCTTCCTGGAGCTTATGTTTTACGCTGGT
GTTGACGAACTACTTTCACTCTACGTTAAATCGTTTGCAACTGACGTTTC
ACTCACTagtttttggaattggtacccgactCAATCTCCAAATCTAAAGT
ACATGGCGAACATGTGCCTGAATCATCTTTTTGCGATGATGTTATTTAGA
GTTTCGGTTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031478XLOC_031478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049642-exon-scaffold_164-1491911889:173882..173932TCONS_00049642-exon-scaffold_164-1491911889:173882..173932Clytia hemisphaericaexon
TCONS_00049642-exon-scaffold_164-1510915933:173882..173932TCONS_00049642-exon-scaffold_164-1510915933:173882..173932Clytia hemisphaericaexon
TCONS_00049642-exon-scaffold_164-1575043694:173882..173932TCONS_00049642-exon-scaffold_164-1575043694:173882..173932Clytia hemisphaericaexon
TCONS_00049642-exon-scaffold_164-1491911889:174059..174343TCONS_00049642-exon-scaffold_164-1491911889:174059..174343Clytia hemisphaericaexon
TCONS_00049642-exon-scaffold_164-1510915933:174059..174343TCONS_00049642-exon-scaffold_164-1510915933:174059..174343Clytia hemisphaericaexon
TCONS_00049642-exon-scaffold_164-1575043694:174059..174343TCONS_00049642-exon-scaffold_164-1575043694:174059..174343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:173882..174343 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188612	0.509717	0	0.309443	0	0	0.242491	0.336229	0.235402	1.16633	1.13207	0.87575	1.798	1.15764	2.22073	1.82223	0.419412	1.62254	0.296954	0.621482	0.592674	1.97611	0.320296	0.582391	0.599849	0.743782	1.32704	2.74212	0	0.315897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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