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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049643 ID=TCONS_00049643|Name=TCONS_00049643|organism=Clytia hemisphaerica|type=transcript|length=384bp
TTTAAGGCATTGAAATGGCTATGGAGCAGTTAGAGGGTTTGTTTTTTGCA
AGACACCATCCAATCTATCAACGACTGCTATTGTATAATCGTATCGTTCT
CCAGCAAATGCAGGATGAGATGAAGGATTTGCTGAAAGTAGCCTATACAA
CGTCTGTCACTGGAAATCCTGATTCTTGCCAAGGTGGTGATGCGTGTCTC
GAGGAGATGAACAAAAAGATTAATTTCTGGTTGAACAATGTTGGTATACC
TTCAAAGACAAACTGGACTGAAACTATTAGAAGTCTTGACAATATGGAAA
AGGTTCGTGCAAATCTTAACGACCTTCTACATATCAACTCATCAGAGAAG
CatggaaaaaagattttggaatCTGACATAGCAT Run BLAST on NCBI protein sequence of TCONS_00049643-protein >TCONS_00049643-protein ID=TCONS_00049643-protein|Name=TCONS_00049643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MAMEQLEGLFFARHHPIYQRLLLYNRIVLQQMQDEMKDLLKVAYTTSVTG
NPDSCQGGDACLEEMNKKINFWLNNVGIPSKTNWTETIRSLDNMEKVRAN
LNDLLHINSSEKHGKKILESDIA Run BLAST on NCBI transcript from alignment at scaffold_164:174506..176294+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049643 ID=TCONS_00049643|Name=TCONS_00049643|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at scaffold_164:174506..176294+ (Clytia hemisphaerica)
TTTAAGGCATTGAAATGGCTATGGAGCAGTTAGAGGGTTTGTTTTTTGCA
AGACACCATCCAATCTATCAACGACTGCTATTGTATAATCGTATCGTTCT
CCAGCAAATGCAGGATGAGATGAAGGATTTGCTGAAAGTAGCCTATACAA
CGTCTGTCACTGGAAATCCTGATTCTTGCCAAGGTGGTGAGTACGCATAC
AGAAAAGCTACTATTCTATATGCCTATCCATtggtatttcaaattttgtt
tatgAAATCGAAATACCTATAGTTGTAGTTACCCTATACGCCTTAAACCA
ATGCCTTAATTACAATGTTGGAATATAAAACACTGGCTACCTCGTTTAAT
TCTAAGGTGATGCGTGTCTCGAGGAGATGAACAAAAAGATTAATTTCTGG
TTGAACAATGTTGGTATACCTTCAAAGACAAACTGGACTGAAACTATTAG
AAGTCTTGACAATATGGAAAAGGTATACTCTTTTATCTGTCCGGAAAGAA
GTAGTCTCAACTGAAATAAATGTAGAGAAAGATTTTCTGTTCCCCTATAt
atttaattaatttatttggAATAACACAACAGGAATATGTGATAATTTAT
TTACAACATGCTGCTATTTTTTAGACGCACTATTTTCAGATTCCTTTTCA
TGAGTGGGACAAATCAGTTTGGCTTTTTGCATCTGTAAATTAGTTCTTAT
GCTTTTTCCACTGTATTTGACATGTATCCAGTATGGACATCCGGCCACTT
GACATCCTATTGAACTTTTGGCAATGGTTTTGTAAGTGAAAATCTGTTTA
CATTTTGTACAACTGTTTGGTCGTAATTCAGCTGCAAGTAcggtttttag
tttttttctcgGTTGAGTTTTTCGGTAGACCCTTCACCAGTAGCATTGAC
GATGAAGGATTTACAATCGACAACGTCTGTTTTAATGATGGTGGAGCAAA
GGAGTCTGGGACAGGCTTGATCTAAGATAAACAGTATTGGACAGAGTGTT
ATGACGGTTGAAATTAACAACAAATGCTATATTTGAAGCGAGTGTGAAAA
TGGTTTTACATCATAACAGTGGTGCAGACTTTCTTTGACCTTAACACTAT
ATAAacgaaaaaaagaagataaataTAGCATACCATGATTGTGGTAGGCT
TCCGGATGGTTGGTGCTGCGTTGACAATAATGGGATCCAAGGCACTAACC
TCCTCCGTTTGTGTCATTATAGATACTGTTTTTATACATTGTTTTTGATA
GGGTTAACGATAGAAACAGGGATGATTGGTTTTTCTGCGGTTTTCTAAAA
GATATGGGGTCTTGTTTAGATATCTATAACTAACGTCAAAGGTCACAAAG
ATTGCCGAAACAGTTGAAAGCCTTTAACGAGCTCACATAATACAATATCT
TAATTTGCAAGGTAGCTTTAGAAGGACTTGAAACGTTAATTATAGACTAT
TGGCTTAATAAAGGTATAAACGATGGAAAAAAACACCACTTTAACGAAGA
TCTAAAGAAAGACCGAGGAAAGATAATACcagttactttaaattttatac
TCACAGGGAATGTGTCCAAATCTTGAAGCACTTCCAAATTCGTTCCTGCA
ACCTTAAACTTTACGAAGAAAGGGTACCGTTTTTCTTGCACTCGTTTCAG
CTGAAATGAGAATATTCGGAATATTGTACGACATGAATAAATTTGATACC
TTTACAGGTTCGTGCAAATCTTAACGACCTTCTACATATCAACTCATCAG
AGAAGCatggaaaaaagattttggaatCTGACATAGCAT Coding sequence (CDS) from alignment at scaffold_164:174506..176294+ >TCONS_00049643 ID=TCONS_00049643|Name=TCONS_00049643|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_164:174506..176294+ (Clytia hemisphaerica)
ATGGCTATGGAGCAGTTAGAGGGTTTGTTTTTTGCAAGACACCATCCAAT
CTATCAACGACTGCTATTGTATAATCGTATCGTTCTCCAGCAAATGCAGG
ATGAGATGAAGGATTTGCTGAAAGTAGCCTATACAACGTCTGTCACTGGA
AATCCTGATTCTTGCCAAGGTGGTGATGCGTGTCTCGAGGAGATGAACAA
AAAGATTAATTTCTGGTTGAACAATGTTGGTATACCTTCAAAGACAAACT
GGACTGAAACTATTAGAAGTCTTGACAATATGGAAAAGGTTCGTGCAAAT
CTTAACGACCTTCTACATATCAACTCATCAGAGAAGCatggaaaaaagat
tttggaatCTGACATAGCAATGGCTATGGAGCAGTTAGAGGGTTTGTTTT
TTGCAAGACACCATCCAATCTATCAACGACTGCTATTGTATAATCGTATC
GTTCTCCAGCAAATGCAGGATGAGATGAAGGATTTGCTGAAAGTAGCCTA
TACAACGTCTGTCACTGGAAATCCTGATTCTTGCCAAGGTGGTGATGCGT
GTCTCGAGGAGATGAACAAAAAGATTAATTTCTGGTTGAACAATGTTGGT
ATACCTTCAAAGACAAACTGGACTGAAACTATTAGAAGTCTTGACAATAT
GGAAAAGGTTCGTGCAAATCTTAACGACCTTCTACATATCAACTCATCAG
AGAAGCatggaaaaaagattttggaatCTGACATAGCAATGGCTATGGAG
CAGTTAGAGGGTTTGTTTTTTGCAAGACACCATCCAATCTATCAACGACT
GCTATTGTATAATCGTATCGTTCTCCAGCAAATGCAGGATGAGATGAAGG
ATTTGCTGAAAGTAGCCTATACAACGTCTGTCACTGGAAATCCTGATTCT
TGCCAAGGTGGTGATGCGTGTCTCGAGGAGATGAACAAAAAGATTAATTT
CTGGTTGAACAATGTTGGTATACCTTCAAAGACAAACTGGACTGAAACTA
TTAGAAGTCTTGACAATATGGAAAAGGTTCGTGCAAATCTTAACGACCTT
CTACATATCAACTCATCAGAGAAGCatggaaaaaagattttggaatCTGA
CATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049643-exon-scaffold_164-1491911889:174506..174691 | TCONS_00049643-exon-scaffold_164-1491911889:174506..174691 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1510915933:174506..174691 | TCONS_00049643-exon-scaffold_164-1510915933:174506..174691 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1575043694:174506..174691 | TCONS_00049643-exon-scaffold_164-1575043694:174506..174691 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1491911889:174862..174977 | TCONS_00049643-exon-scaffold_164-1491911889:174862..174977 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1510915933:174862..174977 | TCONS_00049643-exon-scaffold_164-1510915933:174862..174977 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1575043694:174862..174977 | TCONS_00049643-exon-scaffold_164-1575043694:174862..174977 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1491911889:176213..176294 | TCONS_00049643-exon-scaffold_164-1491911889:176213..176294 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1510915933:176213..176294 | TCONS_00049643-exon-scaffold_164-1510915933:176213..176294 | Clytia hemisphaerica | exon |
| TCONS_00049643-exon-scaffold_164-1575043694:176213..176294 | TCONS_00049643-exon-scaffold_164-1575043694:176213..176294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_164 | supercontig | scaffold_164:174506..176294 + |
Blast
The following BLAST results are available for this feature:
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