TCONS_00049657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049657
Unique NameTCONS_00049657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049657 ID=TCONS_00049657|Name=TCONS_00049657|organism=Clytia hemisphaerica|type=transcript|length=383bp
ATGCTATGTCAGattccaaaatcttttttccatGCTTCTCTGATGAGTTG
ATATGTAGAAGGTCGTTAAGATTTGCACGAACCTGTAAAGGTATCAAATT
TATTCATGTCGTACAATATTCCGAATATTCTCATTTCAGCTGAAACGAGT
GCAAGAAAAACGGTACCCTTTCTTCGTAAAGTTTAAGGTTGCAGGAACGA
ATTTGGAAGTGCTTCAAGATTTGGACACATTCCCTAAAACCGCAGAAAAA
CCAATCATCCCTGTTTCTATCGTTAACCCTATCAAAAACAATGTATAAAA
ACAGTATCTATAATGACACAAACGGAGGAGGTTAGTGCCTTGGATCCCAT
TATTGTCAACGCAGCACCAACCATCCGGAAGCC
Run BLAST on NCBI

transcript from alignment at scaffold_164:175652..176294-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049657 ID=TCONS_00049657|Name=TCONS_00049657|organism=Clytia hemisphaerica|type=transcript|length=643bp|location=Sequence derived from alignment at scaffold_164:175652..176294- (Clytia hemisphaerica)
ATGCTATGTCAGATTCCAAAATCTTTTTTCCATGCTTCTCTGATGAGTTG
ATATGTAGAAGGTCGTTAAGATTTGCACGAACCTGTAAAGGTATCAAATT
TATTCATGTCGTACAATATTCCGAATATTCTCATTTCAGCTGAAACGAGT
GCAAGAAAAACGGTACCCTTTCTTCGTAAAGTTTAAGGTTGCAGGAACGA
ATTTGGAAGTGCTTCAAGATTTGGACACATTCCCTGTGAGTATAAAATTT
AAAGTAACTGGTATTATCTTTCCTCGGTCTTTCTTTAGATCTTCGTTAAA
GTGGTGTTTTTTTCCATCGTTTATACCTTTATTAAGCCAATAGTCTATAA
TTAACGTTTCAAGTCCTTCTAAAGCTACCTTGCAAATTAAGATATTGTAT
TATGTGAGCTCGTTAAAGGCTTTCAACTGTTTCGGCAATCTTTGTGACCT
TTGACGTTAGTTATAGATATCTAAACAAGACCCCATATCTTTTAGAAAAC
CGCAGAAAAACCAATCATCCCTGTTTCTATCGTTAACCCTATCAAAAACA
ATGTATAAAAACAGTATCTATAATGACACAAACGGAGGAGGTTAGTGCCT
TGGATCCCATTATTGTCAACGCAGCACCAACCATCCGGAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031483XLOC_031483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049657-exon-scaffold_164-1575043694:176060..176294TCONS_00049657-exon-scaffold_164-1575043694:176060..176294Clytia hemisphaericaexon
TCONS_00049657-exon-scaffold_164-1575043694:175652..175799TCONS_00049657-exon-scaffold_164-1575043694:175652..175799Clytia hemisphaericaexon
TCONS_00049657-exon-scaffold_164-1510915933:176060..176294TCONS_00049657-exon-scaffold_164-1510915933:176060..176294Clytia hemisphaericaexon
TCONS_00049657-exon-scaffold_164-1510915933:175652..175799TCONS_00049657-exon-scaffold_164-1510915933:175652..175799Clytia hemisphaericaexon
TCONS_00049657-exon-scaffold_164-1491911889:176060..176294TCONS_00049657-exon-scaffold_164-1491911889:176060..176294Clytia hemisphaericaexon
TCONS_00049657-exon-scaffold_164-1491911889:175652..175799TCONS_00049657-exon-scaffold_164-1491911889:175652..175799Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:175652..176294 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611685	1.19298	0.23086	0.451722	4.12446	2.1512	4.71851	5.14202	3.09273	1.91542	2.68545	2.71586	2.49881	3.59139	3.55244	5.28085	5.1715	7.24875	3.25117	3.244	2.36565	3.17317	1.14374	0.425084	8.74536	4.10287	0	1.92015	1.05644	0.922287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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