TCONS_00049674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049674
Unique NameTCONS_00049674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049674 ID=TCONS_00049674|Name=TCONS_00049674|organism=Clytia hemisphaerica|type=transcript|length=641bp
NNGGAGTTGAGATTGACACCACCTCTTTGACTCTCTCTCTCCCAGTCAAG
AAGCTAGGTGATCTGAAAGATGCACTACTGTCTTTTCAGTCCCGAGCTCG
TGCGTCAAAGAGGCAGCTACAACAGCTTGCTGGCCGTCTTAACTGGGCTT
GCAAGGTTATTTTTGGAGGAAGAACTTTTTTGCGTCGTATTCTTGACCTT
ATGGGCTCCTTACGGAAACAGTCATCCAAGTGTCTGTTGAGTGAGGAGTT
TTTTAAGGACATTTCTTGGTGGTtggattttcttgagatttttaaTGGTC
AGTGTTCCTTTCATGACACTAGACCTGTTACTAACATCCACACGGATGCC
TGTACAACAGGCATCGGAGCAGTTTTTGACAATGACTGGTTCTATTCTAA
TTTGTTGGTTGATGCTCCTGCCCTTGCAGGCTTGCACATCAACTACAAGG
AAGCGTTTTGCATTGTTTTTGCCTTGGAACGCTGGGTACCTTACTTGTGT
AATAAGGTTGTCCATATTTACTGTGACAACACGGCTGCAGTTGGGATGTT
GAATAAAGGATCATCTCGCAACCCGCTCATGATGACTTACCTCAGACGTC
TGTTCTGGTGTTCTGCCACCTATAACTTTCGCCTAAAAGTT
Run BLAST on NCBI

protein sequence of TCONS_00049674-protein

>TCONS_00049674-protein ID=TCONS_00049674-protein|Name=TCONS_00049674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
GVEIDTTSLTLSLPVKKLGDLKDALLSFQSRARASKRQLQQLAGRLNWAC
KVIFGGRTFLRRILDLMGSLRKQSSKCLLSEEFFKDISWWLDFLEIFNGQ
CSFHDTRPVTNIHTDACTTGIGAVFDNDWFYSNLLVDAPALAGLHINYKE
AFCIVFALERWVPYLCNKVVHIYCDNTAAVGMLNKGSSRNPLMMTYLRRL
FWCSATYNFRLKV
Run BLAST on NCBI

transcript from alignment at scaffold_164:202192..202832

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049674 ID=TCONS_00049674|Name=TCONS_00049674|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at scaffold_164:202192..202832 (Clytia hemisphaerica)
AACTTTTAGGCGAAAGTTATAGGTGGCAGAACACCAGAACAGACGTCTGA
GGTAAGTCATCATGAGCGGGTTGCGAGATGATCCTTTATTCAACATCCCA
ACTGCAGCCGTGTTGTCACAGTAAATATGGACAACCTTATTACACAAGTA
AGGTACCCAGCGTTCCAAGGCAAAAACAATGCAAAACGCTTCCTTGTAGT
TGATGTGCAAGCCTGCAAGGGCAGGAGCATCAACCAACAAATTAGAATAG
AACCAGTCATTGTCAAAAACTGCTCCGATGCCTGTTGTACAGGCATCCGT
GTGGATGTTAGTAACAGGTCTAGTGTCATGAAAGGAACACTGACCAttaa
aaatctcaagaaaatccaACCACCAAGAAATGTCCTTAAAAAACTCCTCA
CTCAACAGACACTTGGATGACTGTTTCCGTAAGGAGCCCATAAGGTCAAG
AATACGACGCAAAAAAGTTCTTCCTCCAAAAATAACCTTGCAAGCCCAGT
TAAGACGGCCAGCAAGCTGTTGTAGCTGCCTCTTTGACGCACGAGCTCGG
GACTGAAAAGACAGTAGTGCATCTTTCAGATCACCTAGCTTCTTGACTGG
GAGAGAGAGAGTCAAAGAGGTGGTGTCAATCTCAACTCCNN

Coding sequence (CDS) from alignment at scaffold_164:202192..202832

>TCONS_00049674 ID=TCONS_00049674|Name=TCONS_00049674|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_164:202192..202832 (Clytia hemisphaerica)
AACTTTTAGGCGAAAGTTATAGGTGGCAGAACACCAGAACAGACGTCTGA
GGTAAGTCATCATGAGCGGGTTGCGAGATGATCCTTTATTCAACATCCCA
ACTGCAGCCGTGTTGTCACAGTAAATATGGACAACCTTATTACACAAGTA
AGGTACCCAGCGTTCCAAGGCAAAAACAATGCAAAACGCTTCCTTGTAGT
TGATGTGCAAGCCTGCAAGGGCAGGAGCATCAACCAACAAATTAGAATAG
AACCAGTCATTGTCAAAAACTGCTCCGATGCCTGTTGTACAGGCATCCGT
GTGGATGTTAGTAACAGGTCTAGTGTCATGAAAGGAACACTGACCAttaa
aaatctcaagaaaatccaACCACCAAGAAATGTCCTTAAAAAACTCCTCA
CTCAACAGACACTTGGATGACTGTTTCCGTAAGGAGCCCATAAGGTCAAG
AATACGACGCAAAAAAGTTCTTCCTCCAAAAATAACCTTGCAAGCCCAGT
TAAGACGGCCAGCAAGCTGTTGTAGCTGCCTCTTTGACGCACGAGCTCGG
GACTGAAAAGACAGTAGTGCATCTTTCAGATCACCTAGCTTCTTGACTGG
GAGAGAGAGAGTCAAAGAGGTGGTGTCAATCTCAACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031496XLOC_031496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049674-exon-scaffold_164-1491911889:202192..202832TCONS_00049674-exon-scaffold_164-1491911889:202192..202832Clytia hemisphaericaexon
TCONS_00049674-exon-scaffold_164-1510915933:202192..202832TCONS_00049674-exon-scaffold_164-1510915933:202192..202832Clytia hemisphaericaexon
TCONS_00049674-exon-scaffold_164-1575043694:202192..202832TCONS_00049674-exon-scaffold_164-1575043694:202192..202832Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049674-proteinTCONS_00049674-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:202192..202832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.538326	0.910126	0.44368	1.54815	1.87741	2.92139	2.80943	1.37335	2.93491	3.41544	2.52815	2.36105	2.39439	0.984482	1.4461	1.76383	1.21726	0.6111	0.391857	1.10721	1.11776	0.258553	0.239858	3.03357	3.21769	1.14048	1.12955	1.42479	0.650084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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