TCONS_00049662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049662
Unique NameTCONS_00049662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049662 ID=TCONS_00049662|Name=TCONS_00049662|organism=Clytia hemisphaerica|type=transcript|length=779bp
TTGATGCATCACATGATGATGGTAGTTTGGGAAGACTAGTGAACGACTCT
AAAGATTTCCCCAACGCAAAAATGAGGATTTTCGAGATGGAAAATAAACC
GCCCCGCCTTTGCCTTTTTGCTACAAAAACCATAGAAATGTATGacgaaa
ttcaatatttttatggAAAATTCGATCAGCCCTGGTATCATACTCAGGAT
GAAAATCAGTATCCAAAAATCAAATCACAAATGATTTTGAATCAACATTT
AAAAACACAGGCAGAAGAAGAAGGGCGTGTACACTTTGACATCATCGCCG
ATGATGAGAAGGACTTGATAGACTTGACATCTGATAGAGACGACATGAGT
GATATTTTCACACCAGAAATTGTATCTAAAATGaaggaagatgtacAGAA
GAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGCGAAAAATTAC
ATAATGATGATAAATCACAGAAGaaagaattatcaaaagaaGGAAACTCA
CAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAAAACGCGGAGA
GTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCACCGAAAAACG
AAGGATccttgaaagaagaaaaattacaacaTGACGAGGAGTCGCCGAAA
GAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATAAATCCTTGAA
AGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAGAAGGATTTAC
AGAAGACTGATGGATCACCAAAGGATGAC
Run BLAST on NCBI

transcript from alignment at scaffold_164:233888..236736-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049662 ID=TCONS_00049662|Name=TCONS_00049662|organism=Clytia hemisphaerica|type=transcript|length=2849bp|location=Sequence derived from alignment at scaffold_164:233888..236736- (Clytia hemisphaerica)
TTGATGCATCACATGATGATGGTAGTTTGGGAAGACTAGTGAACGACTCT
AAAGATTTCCCCAACGCAAAAATGAGGATTTTCGAGATGGAAAATAAACC
GCCCCGCCTTTGCCTTTTTGCTACAAAAACCATAGAAATGTATGACGAAA
TTCAATATTTTTATGGAAAATTCGATCAGCCCTGGTATCATACTCAGGTA
AGAACTAGGTACCAATAAGGCCCTAAGCAAAGGGGGTTGGTGCATCCTAT
AACCCCCTGTCTATTAGGTACCAGAGAGCAGAGACTCAAGCAGTGTTCAA
AGTTATTATGTCTCAGGGATTTTAAATCTCTGATCATCTCTTGAACAGTA
ACAGGTGTGATTATAACAGCATCAATCCTATCAGTTGAGCTACTGACTAA
AATTTTGATTATTTCCAAACAAGCATTAAGTTTTGGGATTTTTCTAACCC
TCCTACATATTCTAAACCCCCTGTCTATTAGGTACCAGAGAACAGTCTCG
AACAGTGTCCAAAGTTCTTATGTCTCAGAGGGATTTCCATCTCTTAGATT
ATCTCCTTGAGTTTTTTTAATTGTAGGAAATGCAGCAAATTGAGGTTGAA
CATAATGGTGAAAATTTCCCACAAACAAGGAAAAAGGTACGAGTTGGCTC
AATATAACATACACTTATTTTGTTTTATAAGCATACGGTAAATTTCGGCT
GAAGCTCACTATGCTTAAGTAAAGCTCAATTTTGAGCCTCGACTATGCTT
AACCCTATGCTTGGTAAAAAAATTATGAAGGGATGGTAAAAAAATTCGCG
CATTTTCCCCTATCTTTAATCTTGAGAGAAATGAAGACATTCTATTGTTT
TCGAATGTTTACCATATGATTTCTTCTGTTATTTTCCGAAGTTTTGGAAA
TTATGAAATGGAAATTTCTTTGCCTGAGCCTCAAGGTATGCTTAGCATAT
TCTTAATTTTTCTGGAAATTTGAGCTTAAGTATGCTTATAACCGTTATGC
TTATAAAACAAAATGAGTGTACCTTAAGTGGATAGATTTTTGTGTGGACT
TATTTTTGCGAGACAAGAATTTGAAGATTTAGCGTGGATTAATTTTCGCA
GAGGCCTTTTTTATTTAATTTTGCATAAAAATCGAATAATTTTAGAAAAG
TTTTTTCAAATTCATTTTTTTCTTTACAAAATTTGGATGATTAATTTTCC
CAGCTTAAAGCTATGCTTAGCAAAGTGTATAAAGAAAATAACACATTTTT
TTAGTTGGCAGAAATTGGACTTGAGCTAGATTTTTGTCCTTAAAGACCCC
TCCCTTAATTCCAGAGAATTACTTCAATAAAGGCATTTTTTCAACTTCTT
TAATTAATCATTATCGTTTAGGATGAAAATCAGTATCCAAAAATCAAATC
ACAAATGATTTTGAATCAACATTTAAAAACACAGGCAGAAGAAGAAGGGC
GTGTACACTTTGACATCATCGCCGATGATGAGAAGGTAGTACTTTGTTTC
ATAAACAGAAGATAAATAGCTCAAAAGAGATCACCAGTATACATATCTTT
ACCATCTGGATAAAGCTATCACTACCTCACTAACATTCTTCCTATTGATA
GTGTAAAGCAGTGGCATAGTGTATTTTGAAGGCGGCGCCGAAAAAAGAGG
GTACCTCAGGGATCTAATTAGCGTATCGCAATTCGCGATGCGTTTTTGGA
TTACTTACAAGCTAAAAATTGAAAATTGATCCATTTTAGGATGCAAAATC
ATGCCTATCAAAAAATTGCGATGCACTTTCTATCCCTTATTTCGATGGCT
GTACTTAAGGGAGTCTTCCAGTCGCTCTTCTCAAAAAAAAAAAAATATAT
TGGAAAACTGATAAGTCACGCTCCTTTAGTTCCAAATTTTTTCGCTTGCA
ACACTCGTTCATTTTCTATAGGAAAGTTCAGTTTACAAGCTCAGTTTTGT
TAATATGATAAGTTATGTCTTATTCTTATAAACTGATGGACAGCTACGGT
AGATTTTGCGAGTATTTTATATTGAAATTCTTTGATCTGCTCATAATTTT
TCCAGTTTTCTCATTATTGGCATAGCATATGTGCCAGATTTAACCATCTT
GTTTGATCATGTTGATATTTTTGACTATTGCGTCATAGTATTTTTTGAAT
CTTTCTCCTTTCAGGACTTGATAGACTTGACATCTGATAGAGACGACATG
AGTGATATTTTCACACCAGAAATTGTATCTAAAATGGTGCGTATAAGTTA
CATAGTAGGGGGTGTTATTTTCCAAAAAAATGGTCAAGATTTGTAAAAAG
TTGGTATTAAAAGATGAAAAAGTAATGTTAAAACCCAGTTGCACCGAATT
TCAGACCCGTACTATTTTTACAATGTTAAAGACTTTTTTGAGCTCACTCG
TATCCTTGAACAAACTTGTTTTAATTTTAGTATATTTTACCCCTCTTTTT
TAGAAGGAAGATGTACAGAAGAGTGAGGAATTACAGAAGGACCAAGAGTC
ATTGCAAAGCGAAAAATTACATAATGATGATAAATCACAGAAGAAAGAAT
TATCAAAAGAAGGAAACTCACAAAGAGACGAAAAATTACTAAATGCCAAG
GAATCACCAAAACGCGGAGAGTCTCGAAAAGACAAAAAATTGCAACATAG
CCAGGAATCACCGAAAAACGAAGGATCCTTGAAAGAAGAAAAATTACAAC
ATGACGAGGAGTCGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTG
AAAGACGATAAATCCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCC
ACTTGAACAGAAGGATTTACAGAAGACTGATGGATCACCAAAGGATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031484XLOC_031484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049662-exon-scaffold_164-1575043694:236540..236736TCONS_00049662-exon-scaffold_164-1575043694:236540..236736Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1575043694:235252..235365TCONS_00049662-exon-scaffold_164-1575043694:235252..235365Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1575043694:234501..234572TCONS_00049662-exon-scaffold_164-1575043694:234501..234572Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1575043694:233888..234283TCONS_00049662-exon-scaffold_164-1575043694:233888..234283Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1510915933:236540..236736TCONS_00049662-exon-scaffold_164-1510915933:236540..236736Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1510915933:235252..235365TCONS_00049662-exon-scaffold_164-1510915933:235252..235365Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1510915933:234501..234572TCONS_00049662-exon-scaffold_164-1510915933:234501..234572Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1510915933:233888..234283TCONS_00049662-exon-scaffold_164-1510915933:233888..234283Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1491911889:236540..236736TCONS_00049662-exon-scaffold_164-1491911889:236540..236736Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1491911889:235252..235365TCONS_00049662-exon-scaffold_164-1491911889:235252..235365Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1491911889:234501..234572TCONS_00049662-exon-scaffold_164-1491911889:234501..234572Clytia hemisphaericaexon
TCONS_00049662-exon-scaffold_164-1491911889:233888..234283TCONS_00049662-exon-scaffold_164-1491911889:233888..234283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:233888..236736 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.498146	0.14354	0.184157	0	0.78227	2.13953	1.61674	1.41643	1.13162	0.627669	0.912763	0.035719	1.01964	2.03406	0.872942	0.890688	0.198313	0.710049	0.179501	0.544201	0.280216	0.124377	0.212034	0.470816	2.31147	3.69375	0.286011	0.793617	0.933183	0.562846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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