TCONS_00049718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049718
Unique NameTCONS_00049718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049718 ID=TCONS_00049718|Name=TCONS_00049718|organism=Clytia hemisphaerica|type=transcript|length=326bp
CTGAAGTGTACTTCTTCGCCCCAAAACAGATACGTTTTTAGCAGTGTACT
GGTCATCAGCTACACTAAAAACCTATCAAAgctattcaaagtctttgaaa
gtcagccCTATCCCCATGTGCTCTCGCCTTGCACTTGACCCATTTCATAT
CATGGATGACACTGTTTAATTGCTTGTGGTTTCCAGAAATGTGTTTGTTG
GGAAATCCCCCCTCCCCCAgatttttgagtgttttgaaaGACACCTACCA
TTGCAAGGATAGCACTTTTCAAGGCATTTTATATCGAAAATGGGTCCTAA
GTGTTTTATTTCACCAATTTCTTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_165:53613..53938

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049718 ID=TCONS_00049718|Name=TCONS_00049718|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_165:53613..53938 (Clytia hemisphaerica)
GGAAAGAAATTGGTGAAATAAAACACTTAGGACCCATTTTCGATATAAAA
TGCCTTGAAAAGTGCTATCCTTGCAATGGTAGGTGTCtttcaaaacactc
aaaaatcTGGGGGAGGGGGGATTTCCCAACAAACACATTTCTGGAAACCA
CAAGCAATTAAACAGTGTCATCCATGATATGAAATGGGTCAAGTGCAAGG
CGAGAGCACATGGGGATAGggctgactttcaaagactttgaatagcTTTG
ATAGGTTTTTAGTGTAGCTGATGACCAGTACACTGCTAAAAACGTATCTG
TTTTGGGGCGAAGAAGTACACTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031523XLOC_031523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049718-exon-scaffold_165-1491911889:53613..53938TCONS_00049718-exon-scaffold_165-1491911889:53613..53938Clytia hemisphaericaexon
TCONS_00049718-exon-scaffold_165-1510915933:53613..53938TCONS_00049718-exon-scaffold_165-1510915933:53613..53938Clytia hemisphaericaexon
TCONS_00049718-exon-scaffold_165-1575043694:53613..53938TCONS_00049718-exon-scaffold_165-1575043694:53613..53938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:53613..53938 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303212	0.591359	0.731483	2.65299	5.44004	2.90805	5.16069	2.7079	1.62331	1.95243	2.7881	0.892409	1.43991	2.19984	1.32011	1.75483	1.85471	1.0581	0	2.26392	5.94491	5.38752	0.806607	0.656504	16.3249	22.4531	4.5357	6.05215	5.79937	3.56946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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