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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049682 ID=TCONS_00049682|Name=TCONS_00049682|organism=Clytia hemisphaerica|type=transcript|length=1515bp
GTTTAGTTAAAGGCTTATCAGACGAAGCACTTTAACTTCACTTTATTTTG
CTAGTCAAGGTAGCACTGACTCTAGCCCAACTGGAACTGCCTGCATGCAA
AGGCTTTATAGCAAAAGGGGACTGGAGCAGAGAGCATGACAGTGCAGTTG
GGCAAACAAGGCAAACAGAAACCAGGGGGGCCTTGCTGACTCCAAATGCT
ACATTCCTCCAGACACTATCAGATGAGTCAGCAAGGTAGGGAAAACATAA
TAACATAATATATATTCTATAACATGATATTATATGAACTCACTTGAGTA
ACCAAAAGAGTATAAACACATTATATATGACACATTTTACATTACCATTC
AACTTGTTAACCACAACAATATTAAACCAATCTCCTTTCATTCGTCCCAA
TCATCATCCTTGAACATCAGCACAAGCGAGAGGTCGATACATATAGGGGG
CACTTCACCGGAGCAGTCGTTTTAATTCGTCGTCTGGGTTGATTGTTGAT
GTCGAGCTCAGTAGGAGGGGGAAGTACATGAAAAGAGAAGAATGGTGCAT
TAGTAATTTTTCTCGCTACCAAACAAACATTGTGAGATGCAGCAAAACCA
TGAGTACTATGGCTGGAAATGTACAAGTTCCTGCagaatcttttcaaaaa
attttaaaatgtctcTTTTTATTCCTTATTCCTACCCCTTTAAATTTTAG
AGGTCGTTCGTATCCCCAATTCTTTCGATAAGCTCAATTTGTTTCTTTGG
GGTTTTGGTAGAGGGGACAAACAGGTTGGAGGGATGGTTCGCCAAAACTG
TTGTAGGTGAGATGCTTTGCTGGTTTTCTTTGTCGTGTTGACCGTCGTGG
AGTATCTTGTTGTTCTAGGTTGTCCTCATAACTTTGTAATCTAGGAGGGG
AGATGAGTGGCAACCTCGGGAGGTCAATGATTGATCGTAGCATTGAGTCC
TTGGTGTTGGCGTTGGGCAGCGACAGGTCAGATGCTTCTTCATTGGTTTC
CTCCTGCCCCTCTCCAGGTGTGCCCACAGCTTCCTCTTCAGTTTTGACAT
CGAACAGCACAATATCGTTATGTGTGCCCGCATCATTGTTGTCATCGGAC
AGCATCACGTTTGGTGTGCCCGCATCTACCTCAAAGTTGTTGTCATCCAA
CAGCACCCCGGTGGGCGTGTCCGTATCTACATCATTGTTGTAATCGGGCA
ACACCTGTGACAGTGTACCCGCAGCCTCCTCATCTGTGTTGTCATCGGAC
AGCTAAATATCGTCATGTGTGCCCGCATCATTGTTGTCATCGGACAGCAC
CACGCTTGGTGTGTCCGCATCTACCTCAAAGTTGTTGTCATCCAGCAGCA
CCCCGTTGGGTGTACCCGCATCTACATCGTTGTTGTGGTTGGGCAACACC
TGTATGGGCGCGTTTTTCTGACCTGCTTGAGATGTCCCAGGAATATCGAG
GACCCTTTTGAGTTGACGTAGACAACCAAATCGAAATGTTTGATTTTCCT
CTTCATCTTGGAGAT Run BLAST on NCBI transcript from alignment at scaffold_165:56551..58141+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049682 ID=TCONS_00049682|Name=TCONS_00049682|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_165:56551..58141+ (Clytia hemisphaerica)
GTTTAGTTAAAGGCTTATCAGACGAAGCACTTTAACTTCACTTTATTTTG
CTAGTCAAGGTAGCACTGACTCTAGCCCAACTGGAACTGCCTGCATGCAA
AGGCTTTATAGCAAAAGGGGACTGGAGCAGAGAGCATGACAGTGCAGTTG
GGCAAACAAGGCAAACAGAAACAAGGGGGGGGCCTTGCTGACTCCAAATG
CTACATTCATCCNAACAGTGCAGTTGGGCAAACAAGGCAAACAGAAACCA
GGGGGGCCTTGCTGACTCCAAATGCTACATTCCTCCAGACACTATCAGAT
GAGTCAGCAAGGTAGGGAAAACATAATAACATAATATATATTCTATAACA
TGATATTATATGAACTCACTTGAGTAACCAAAAGAGTATAAACACATTAT
ATATGACACATTTTACATTACCATTCAACTTGTTAACCACAACAATATTA
AACCAATCTCCTTTCATTCGTCCCAATCATCATCCTTGAACATCAGCACA
AGCGAGAGGTCGATACATATAGGGGGCACTTCACCGGAGCAGTCGTTTTA
ATTCGTCGTCTGGGTTGATTGTTGATGTCGAGCTCAGTAGGAGGGGGAAG
TACATGAAAAGAGAAGAATGGTGCATTAGTAATTTTTCTCGCTACCAAAC
AAACATTGTGAGATGCAGCAAAACCATGAGTACTATGGCTGGAAATGTAC
AAGTTCCTGCagaatcttttcaaaaaattttaaaatgtctcTTTTTATTC
CTTATTCCTACCCCTTTAAATTTTAGAGGTCGTTCGTATCCCCAATTCTT
TCGATAAGCTCAATTTGTTTCTTTGGGGTTTTGGTAGAGGGGACAAACAG
GTTGGAGGGATGGTTCGCCAAAACTGTTGTAGGTGAGATGCTTTGCTGGT
TTTCTTTGTCGTGTTGACCGTCGTGGAGTATCTTGTTGTTCTAGGTTGTC
CTCATAACTTTGTAATCTAGGAGGGGAGATGAGTGGCAACCTCGGGAGGT
CAATGATTGATCGTAGCATTGAGTCCTTGGTGTTGGCGTTGGGCAGCGAC
AGGTCAGATGCTTCTTCATTGGTTTCCTCCTGCCCCTCTCCAGGTGTGCC
CACAGCTTCCTCTTCAGTTTTGACATCGAACAGCACAATATCGTTATGTG
TGCCCGCATCATTGTTGTCATCGGACAGCATCACGTTTGGTGTGCCCGCA
TCTACCTCAAAGTTGTTGTCATCCAACAGCACCCCGGTGGGCGTGTCCGT
ATCTACATCATTGTTGTAATCGGGCAACACCTGTGACAGTGTACCCGCAG
CCTCCTCATCTGTGTTGTCATCGGACAGCTAAATATCGTCATGTGTGCCC
GCATCATTGTTGTCATCGGACAGCACCACGCTTGGTGTGTCCGCATCTAC
CTCAAAGTTGTTGTCATCCAGCAGCACCCCGTTGGGTGTACCCGCATCTA
CATCGTTGTTGTGGTTGGGCAACACCTGTATGGGCGCGTTTTTCTGACCT
GCTTGAGATGTCCCAGGAATATCGAGGACCCTTTTGAGTTGACGTAGACA
ACCAAATCGAAATGTTTGATTTTCCTCTTCATCTTGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049682-exon-scaffold_165-1491911889:56551..56710 | TCONS_00049682-exon-scaffold_165-1491911889:56551..56710 | Clytia hemisphaerica | exon |
| TCONS_00049682-exon-scaffold_165-1510915933:56551..56710 | TCONS_00049682-exon-scaffold_165-1510915933:56551..56710 | Clytia hemisphaerica | exon |
| TCONS_00049682-exon-scaffold_165-1575043694:56551..56710 | TCONS_00049682-exon-scaffold_165-1575043694:56551..56710 | Clytia hemisphaerica | exon |
| TCONS_00049682-exon-scaffold_165-1491911889:56787..58141 | TCONS_00049682-exon-scaffold_165-1491911889:56787..58141 | Clytia hemisphaerica | exon |
| TCONS_00049682-exon-scaffold_165-1510915933:56787..58141 | TCONS_00049682-exon-scaffold_165-1510915933:56787..58141 | Clytia hemisphaerica | exon |
| TCONS_00049682-exon-scaffold_165-1575043694:56787..58141 | TCONS_00049682-exon-scaffold_165-1575043694:56787..58141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:56551..58141 + |
Blast
The following BLAST results are available for this feature:
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