TCONS_00049699 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049699
Unique Name	TCONS_00049699
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1396

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_165:56551..58141-

transcript sequence

>TCONS_00049699 ID=TCONS_00049699|Name=TCONS_00049699|organism=Clytia hemisphaerica|type=transcript|length=1396bp
ATCTCCAAGATGAAGAGGAAAATCAAACATTTCGATTTGGTTGTCTACGT
CAACTCAAAAGGGTCCTCGATATTCCTGGGACATCTCAAGCAGGTCAGAA
AAACGCGCCCATACAGGTGTTGCCCAACCACAACAACGATGTAGATGCGG
GTACACCCAACGGGGTGCTGCTGGATGACAACAACTTTGAGGTAGATGCG
GACACACCAAGCGTGGTGCTGTCCGATGACAACAATGATGCGGGCACACA
TAACGATATTGTGCTGTTCGATGTCAAAACTGAAGAGGAAGCTGTGGGCA
CACCTGGAGAGGGGCAGGAGGAAACCAATGAAGAAGCATCTGACCTGTCG
CTGCCCAACGCCAACACCAAGGACTCAATGCTACGATCAATCATTGACCT
CCCGAGGTTGCCACTCATCTCCCCTCCTAGATTACAAAGTTATGAGGACA
ACCTAGAACAACAAGATACTCCACGACGGTCAACACGACAAAGAAAACCA
GCAAAGCATCTCACCTACAACAGTTTTGGCGAACCATCCCTCCAACCTGT
TTGTCCCCTCTACCAAAACCCCAAAGAAACAAATTGAGCTTATCGAAAGA
ATTGGGGATACGAACGACCTCTAAAATTTAAAGGGGTAGGAATAAGGAAT
AAAAAgagacattttaaaattttttgaaaagattctGCAGGAACTTGTAC
ATTTCCAGCCATAGTACTCATGGTTTTGCTGCATCTCACAATGTTTGTTT
GGTAGCGAGAAAAATTACTAATGCACCATTCTTCTCTTTTCATGTACTTC
CCCCTCCTACTGAGCTCGACATCAACAATCAACCCAGACGACGAATTAAA
ACGACTGCTCCGGTGAAGTGCCCCCTATATGTATCGACCTCTCGCTTGTG
CTGATGTTCAAGGATGATGATTGGGACGAATGAAAGGAGATTGGTTTAAT
ATTGTTGTGGTTAACAAGTTGAATGGTAATGTAAAATGTGTCATATATAA
TGTGTTTATACTCTTTTGGTTACTCAAGTGAGTTCATATAATATCATGTT
ATAGAATATATATTATGTTATTATGTTTTCCCTACCTTGCTGACTCATCT
GATAGTGTCTGGAGGAATGTAGCATTTGGAGTCAGCAAGGCCCCCCTGGT
TTCTGTTTGCCTTGTTTGCCCAACTGCACTGTTNGGATGAATGTAGCATT
TGGAGTCAGCAAGGCCCCCCCCTTGTTTCTGTTTGCCTTGTTTGCCCAAC
TGCACTGTCATGCTCTCTGCTCCAGTCCCCTTTTGCTATAAAGCCTTTGC
ATGCAGGCAGTTCCAGTTGGGCTAGAGTCAGTGCTACCTTGACTAGCAAA
ATAAAGTGAAGTTAAAGTGCTTCGTCTGATAAGCCTTTAACTAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_165:56551..58141-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049699 ID=TCONS_00049699|Name=TCONS_00049699|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_165:56551..58141- (Clytia hemisphaerica)
ATCTCCAAGATGAAGAGGAAAATCAAACATTTCGATTTGGTTGTCTACGT
CAACTCAAAAGGGTCCTCGATATTCCTGGGACATCTCAAGCAGGTCAGAA
AAACGCGCCCATACAGGTGTTGCCCAACCACAACAACGATGTAGATGCGG
GTACACCCAACGGGGTGCTGCTGGATGACAACAACTTTGAGGTAGATGCG
GACACACCAAGCGTGGTGCTGTCCGATGACAACAATGATGCGGGCACACA
TGACGATATTTAGCTGTCCGATGACAACACAGATGAGGAGGCTGCGGGTA
CACTGTCACAGGTGTTGCCCGATTACAACAATGATGTAGATACGGACACG
CCCACCGGGGTGCTGTTGGATGACAACAACTTTGAGGTAGATGCGGGCAC
ACCAAACGTGATGCTGTCCGATGACAACAATGATGCGGGCACACATAACG
ATATTGTGCTGTTCGATGTCAAAACTGAAGAGGAAGCTGTGGGCACACCT
GGAGAGGGGCAGGAGGAAACCAATGAAGAAGCATCTGACCTGTCGCTGCC
CAACGCCAACACCAAGGACTCAATGCTACGATCAATCATTGACCTCCCGA
GGTTGCCACTCATCTCCCCTCCTAGATTACAAAGTTATGAGGACAACCTA
GAACAACAAGATACTCCACGACGGTCAACACGACAAAGAAAACCAGCAAA
GCATCTCACCTACAACAGTTTTGGCGAACCATCCCTCCAACCTGTTTGTC
CCCTCTACCAAAACCCCAAAGAAACAAATTGAGCTTATCGAAAGAATTGG
GGATACGAACGACCTCTAAAATTTAAAGGGGTAGGAATAAGGAATAAAAA
GAGACATTTTAAAATTTTTTGAAAAGATTCTGCAGGAACTTGTACATTTC
CAGCCATAGTACTCATGGTTTTGCTGCATCTCACAATGTTTGTTTGGTAG
CGAGAAAAATTACTAATGCACCATTCTTCTCTTTTCATGTACTTCCCCCT
CCTACTGAGCTCGACATCAACAATCAACCCAGACGACGAATTAAAACGAC
TGCTCCGGTGAAGTGCCCCCTATATGTATCGACCTCTCGCTTGTGCTGAT
GTTCAAGGATGATGATTGGGACGAATGAAAGGAGATTGGTTTAATATTGT
TGTGGTTAACAAGTTGAATGGTAATGTAAAATGTGTCATATATAATGTGT
TTATACTCTTTTGGTTACTCAAGTGAGTTCATATAATATCATGTTATAGA
ATATATATTATGTTATTATGTTTTCCCTACCTTGCTGACTCATCTGATAG
TGTCTGGAGGAATGTAGCATTTGGAGTCAGCAAGGCCCCCCTGGTTTCTG
TTTGCCTTGTTTGCCCAACTGCACTGTTNGGATGAATGTAGCATTTGGAG
TCAGCAAGGCCCCCCCCTTGTTTCTGTTTGCCTTGTTTGCCCAACTGCAC
TGTCATGCTCTCTGCTCCAGTCCCCTTTTGCTATAAAGCCTTTGCATGCA
GGCAGTTCCAGTTGGGCTAGAGTCAGTGCTACCTTGACTAGCAAAATAAA
GTGAAGTTAAAGTGCTTCGTCTGATAAGCCTTTAACTAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031514	XLOC_031514	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00049699-exon-scaffold_165-1575043694:57893..58141	TCONS_00049699-exon-scaffold_165-1575043694:57893..58141	Clytia hemisphaerica	exon
TCONS_00049699-exon-scaffold_165-1575043694:56551..57697	TCONS_00049699-exon-scaffold_165-1575043694:56551..57697	Clytia hemisphaerica	exon
TCONS_00049699-exon-scaffold_165-1510915933:57893..58141	TCONS_00049699-exon-scaffold_165-1510915933:57893..58141	Clytia hemisphaerica	exon
TCONS_00049699-exon-scaffold_165-1510915933:56551..57697	TCONS_00049699-exon-scaffold_165-1510915933:56551..57697	Clytia hemisphaerica	exon
TCONS_00049699-exon-scaffold_165-1491911889:57893..58141	TCONS_00049699-exon-scaffold_165-1491911889:57893..58141	Clytia hemisphaerica	exon
TCONS_00049699-exon-scaffold_165-1491911889:56551..57697	TCONS_00049699-exon-scaffold_165-1491911889:56551..57697	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_165	supercontig	scaffold_165:56551..58141 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.169518	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00049699 vs. Swiss-Prot (Human)

BLAST of TCONS_00049699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00049699 (transcript) - C. hemisphaerica