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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049683 ID=TCONS_00049683|Name=TCONS_00049683|organism=Clytia hemisphaerica|type=transcript|length=441bp
GATAAGCATCGATTACTAACGATCATTTACCGCTATTGAGCTTCTGAACC
AAGGTACATACCAAATTCCAAAATGGCGTCGAATAGCTGTAGTACTGGTG
CACGTTGTTCCAACCAACAAGAAAGCGatgaatttatgaaattgtaTTTT
GAAGCTATCTGGGCTCAAGTTTTTGAGTGCATTGAACCTGTAATTAAGAA
GCCATCGAAACGAaagacaaagattttgaaaaagataagGAAAAAGTTAG
AGaaaaaaatctccaaaacAGTTATAAAAGAAAGCGTTGATAAGACTCTA
ACAACTGTTGGAGCAGACCTGTCATCACGATTCAATGTATGTAATTTTGT
GTAAAACtgtctaaaatttgaaaaatactcAACCCAGCTTTAcaaatcag
ttttttttaacCTATTTCCAGCCTTGAATCTTAGTTTTTCA Run BLAST on NCBI transcript from alignment at scaffold_165:66986..70009+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049683 ID=TCONS_00049683|Name=TCONS_00049683|organism=Clytia hemisphaerica|type=transcript|length=3024bp|location=Sequence derived from alignment at scaffold_165:66986..70009+ (Clytia hemisphaerica)
GATAAGCATCGATTACTAACGATCATTTACCGCTATTGAGCTTCTGAACC
AAGGTACATACCAAATTCCAAAATGGCGTCGAATAGCTGTAGTACTGGTG
CACGTTGTTCCAACCAACAAGAAAGCGatgaatttatgaaattgtaTTTT
GAAGGTAGGAATTTTGTCtggtaaaaaatatttgtttggaACATTCTGAA
GAAAATAGTCGCAGAAAATTCTTTAACATTATTCTTGTTATATATGTGGT
GGGGAAATAGGGTGACTTCTGTGTTTgacttccagaaaaaaactttcaca
gCAGGAGCAGGGCATATTGTCCAAGGGGTCCATTTAATCATATCCTAGGC
TAAAACCAAATCTCCAATGCCATGAATGGTGGTTGTTGTTCCTATTGGTC
CNAGGGTGGACAGGtcaaaatttccagaaaaaaactttcacagCAGGAGC
AGGGCATATTGTCCAAGGGGTCCATTTAATCATATCCTAGGCTAAAACCA
AATCTCCAATGCTATGAATGGTGGTTGTTGTTCCTATTGGTCCTCACTCA
TGGATTTAGCGATTCACAGTCCCTCAAGATCATACGGTTCAATTGCTGAG
TGTGGAGAGTTACTTTTTCATAAATGACTATTACTACTGGGTTAACTTTC
ATCACCACAACATTTTCTGGTCCTAAATTTATAAAAGCTAGAAGTCATGA
CATGACTTGTTTATATCCTAGCTAAATTTTAAATCACAGACCAGAACAGT
CTGCTGTTGAAATAAAGTTACCCCTTTTATGAAAGTAATCCCAAATTGAT
GGTATTAGACGTCATGATAATGTACTATAATTCTCTCTGAGGTGGCCATT
GAAAAGTTTCTCTCGCGTTGCAGCGGGAGTTAATGCATGCGGGTAGATGG
GCGGTTGGGCGGTCGGAAAAATTCCCGGGTTCTTTAAAATTGGGACAGTA
TGTCGGAGGCGAGTGGTGACACAAACAATACAAGTTTAAATTATTTGATG
GCTGCCAGAGAGCGAtgaagaaaaaagctataccttTTAAAAGCTTTACC
TGGATTTTTTCCCGCGTCTCTGCACCAGAAAATCAACGGAAAATATGATG
CAGGCGGGTGATacaaatagaacaatttttcgatggccgcctAATCAGTG
TTAGCTATTTTGATTGAATAGaaacaataaattaaaaagGGCAGGTTAac
aagttttcatttttcatggtCTCATTTGCAGAGATTTCATCTAATTTGTT
GTTAAATGCTGAGATCTTGGAAGTCAAAATGTTGCTCTGTTCTTGGTTGT
CTGATATTCCGGTGGATGGGGTTTTGGCAGCTATCCATCTATATTATTAA
AGTagtaacaaaatataaaaacattttaacaaaaaaaattataaatgtaa
atgagttattcaaaaataattcataAGCACCATGTGCTGTGCTAGAATTC
TAAATCAGCAGGCCAATTTACCATCAAACAGTCTGGCAAATATCCGAAAa
cagatattcaattttgacatcaaatcaaaatatctgTGTACGGATATTTT
CGTTGTGATTCGTAACAAAACCTTAGGGCGGCCCACATCGTGTGGGCTTC
GCAAAAACATGGATGTGCTGGGATGTGAACAAATccaattttttctagaa
aaccAACTACCCTCAGTGATATTTAACCTGAGACAAAAAATGTGGGAATT
GTAATTAGGTTTCTAAACTTGGTGTCCCTTCCTTCGGGTAAatgtatgtt
ttgaattgaattgaattgtgCGGGCCACACCTAGGGTCGTTTCGTAACCT
CCTTTTGCCGAGGCATGACTCCCGGTCCCGGGACGTCattggaatatcag
ataattttTTATATGACCAATCTGGCACTTAATAGTGTCCATGCAACTTG
TTTTAGATTTACGAAAAATAGACCCCAGAAAAGCCCGGAAGCATTGTAAA
GTTTACAAATTACTCAAACTCctcacaatttttcaaaaacatgaaGTTCG
AGTAAGTTTGAGTAATTAGCCAAACTTTTGAACTCTAAGGTATGGTAAAA
ATTTGAGTAAAATTcaagtaagtttgaaaattttgaaaatctgccTACTC
TAGTTTAATTGTGGCATATTTCCTCTAATTCCTCAAATGGAATGTTCTCT
GGCAGAGTAAAAGTAGAAAGGTTTCTATCAAACTTATTCTTCTAAATCAT
TGAACTTTTCTCCAATCGAAATTTATAGAACTTCCTTGATCAAGCTTCTC
AAACTCTTCataattttttgcttgtttgaGTAATATGGTCTGTTTCGtac
ataaaaaacaaaaaatgattcTGGAAAATAACAaggttttgaaagatttt
aaattcaataggTACAtaaaaaccttttaaaatttacaaaatagatACCA
AAGAAATTCATGCTGAAATGAAGTTGAAGCAATATTAGGAGGGAAATTGC
CACAAAAATCTAAACTAATCTGATCCGAAAAAGAAATATTGCTGGTATTT
TAGAATATCATTTGGAAACGAgactctttttttcattttagcccCATTTG
CATTATAGTATTATTGCATTATTAATAGTTTTTCTCTTTCAATTTTAAGC
TATCTGGGCTCAAGTTTTTGAGTGCATTGAACCTGTAATTAAGAAGCCAT
CGAAACGAaagacaaagattttgaaaaagataagGAAAAAGTTAGAGGTT
AGAAGAAAAgttcttcattattttttaatagCCTTTTTATTTGTATTTGT
TTGGTGCACAGCTTTCTTTTGCAAGTCagaactttttgactttttcatta
ttattatataactgtgtttttatattttttcctagaaaaaaatctccaaa
acAGTTATAAAAGAAAGCGTTGATAAGACTCTAACAACTGTTGGAGCAGA
CCTGTCATCACGATTCAATGTATGTAATTTTGTGTAAAACtgtctaaaat
ttgaaaaatactcAACCCAGCTTTAcaaatcagttttttttaacCTATTT
CCAGCCTTGAATCTTAGTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049683-exon-scaffold_165-1491911889:66986..67139 | TCONS_00049683-exon-scaffold_165-1491911889:66986..67139 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1510915933:66986..67139 | TCONS_00049683-exon-scaffold_165-1510915933:66986..67139 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1575043694:66986..67139 | TCONS_00049683-exon-scaffold_165-1575043694:66986..67139 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1491911889:69585..69682 | TCONS_00049683-exon-scaffold_165-1491911889:69585..69682 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1510915933:69585..69682 | TCONS_00049683-exon-scaffold_165-1510915933:69585..69682 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1575043694:69585..69682 | TCONS_00049683-exon-scaffold_165-1575043694:69585..69682 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1491911889:69821..70009 | TCONS_00049683-exon-scaffold_165-1491911889:69821..70009 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1510915933:69821..70009 | TCONS_00049683-exon-scaffold_165-1510915933:69821..70009 | Clytia hemisphaerica | exon |
| TCONS_00049683-exon-scaffold_165-1575043694:69821..70009 | TCONS_00049683-exon-scaffold_165-1575043694:69821..70009 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:66986..70009 + |
Blast
The following BLAST results are available for this feature:
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