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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049719 ID=TCONS_00049719|Name=TCONS_00049719|organism=Clytia hemisphaerica|type=transcript|length=1550bp
TAATTACTCAAACTTACTCGAACttcatgtttttgaaaaattgtgagGAG
TTTGAGTAATTTGTAAACTTTACAATGCTTCCGGGCTTTTCTGGGGTCTA
TTTTTCGTAAATCTAAAACAAGTTGCATGGACACTATTAAGTGCCAGATT
GGTCATATAAaaaattatctgatattccaatGACGTCCCGGGACCGGGAG
TCATGCCTCGGCAAAAGGAGGTTACGAAACGACCCTAGGTGTGGCCCGca
caattcaattcaattcaaaacatacatTTACCCGAAGGAAGGGACACCAA
GTTTAGAAACCTAATTACAATTCCCACATTTTTTGTCTCAGGTTAAATAT
CACTGAGGGTAGTTggttttctagaaaaaattggATTTGTTCACATCCCA
GCACATCCATGTTTTTGCGAAGCCCACACGATGTGGGCCGCCCTAAGGTT
TTGTTACGAATCACAACGAAAATATCCGTACAcagatattttgatttgat
gtcaaaattgaatatctgtTTTCGGATATTTGCCAGACTGTTTGATGGTA
AATTGGCCTGCTGATTTAGAATTCTAGCACAGCACATGGTGCTtatgaat
tatttttgaataactcatttacatttataattttttttgttaaaatgttt
ttatattttgttactACTTTAATAATATAGATGGATAGCTGCCAAAACCC
CATCCACCGGAATATCAGACAACCAAGAACAGAGCAACATTTTGACTTCC
AAGATCTCAGCATTTAACAACAAATTAGATGAAATCTCTGCAAATGAGac
catgaaaaatgaaaacttgtTAACCTGCCctttttaatttattgtttCTA
TTCAATCAAAATAGCTAACACTGATTaggcggccatcgaaaaattgttct
atttgtATCACCCGCCTGCATCATATTTTCCGTTGATTTTCTGGTGCAGA
GACGCGGGAAAAAATCCAGGTAAAGCTTTTAAaaggtatagcttttttct
tcaTCGCTCTCTGGCAGCCATCAAATAATTTAAACTTGTATTGTTTGTGT
CACCACTCGCCTCCGACATACTGTCCCAATTTTAAAGAACCCGGGAATTT
TTCCGACCGCCCAACCGCCCATCTACCCGCATGCATTAACTCCCGCTGCA
ACGCGAGAGAAACTTTTCAATGGCCACCTCAGAGAGAATTATAGTACATT
ATCATGACGTCTAATACCATCAATTTGGGATTACTTTCATAAAAGGGGTA
ACTTTATTTCAACAGCAGACTGTTCTGGTCTGTGATTTAAAATTTAGCTA
GGATATAAACAAGTCATGTCATGACTTCTAGCTTTTATAAATTTAGGACC
AGAAAATGTTGTGGTGATGAAAGTTAACCCAGTAGTAATAGTCATTTATG
AAAAAGTAACTCTCCACACTCAGCAATTGAACCGTATGATCTTGAGGGAC
TGTGAATCGCTAAATCCATGAGTGAGGACCAATAGGAACAACAACCACCA
TTCATAGCATTGGAGATTTGGTTTTAGCCTAGGATATGATTAAATGGACC Run BLAST on NCBI transcript from alignment at scaffold_165:67454..69003 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049719 ID=TCONS_00049719|Name=TCONS_00049719|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at scaffold_165:67454..69003 (Clytia hemisphaerica)
GGTCCATTTAATCATATCCTAGGCTAAAACCAAATCTCCAATGCTATGAA
TGGTGGTTGTTGTTCCTATTGGTCCTCACTCATGGATTTAGCGATTCACA
GTCCCTCAAGATCATACGGTTCAATTGCTGAGTGTGGAGAGTTACTTTTT
CATAAATGACTATTACTACTGGGTTAACTTTCATCACCACAACATTTTCT
GGTCCTAAATTTATAAAAGCTAGAAGTCATGACATGACTTGTTTATATCC
TAGCTAAATTTTAAATCACAGACCAGAACAGTCTGCTGTTGAAATAAAGT
TACCCCTTTTATGAAAGTAATCCCAAATTGATGGTATTAGACGTCATGAT
AATGTACTATAATTCTCTCTGAGGTGGCCATTGAAAAGTTTCTCTCGCGT
TGCAGCGGGAGTTAATGCATGCGGGTAGATGGGCGGTTGGGCGGTCGGAA
AAATTCCCGGGTTCTTTAAAATTGGGACAGTATGTCGGAGGCGAGTGGTG
ACACAAACAATACAAGTTTAAATTATTTGATGGCTGCCAGAGAGCGAtga
agaaaaaagctataccttTTAAAAGCTTTACCTGGATTTTTTCCCGCGTC
TCTGCACCAGAAAATCAACGGAAAATATGATGCAGGCGGGTGATacaaat
agaacaatttttcgatggccgcctAATCAGTGTTAGCTATTTTGATTGAA
TAGaaacaataaattaaaaagGGCAGGTTAacaagttttcatttttcatg
gtCTCATTTGCAGAGATTTCATCTAATTTGTTGTTAAATGCTGAGATCTT
GGAAGTCAAAATGTTGCTCTGTTCTTGGTTGTCTGATATTCCGGTGGATG
GGGTTTTGGCAGCTATCCATCTATATTATTAAAGTagtaacaaaatataa
aaacattttaacaaaaaaaattataaatgtaaatgagttattcaaaaata
attcataAGCACCATGTGCTGTGCTAGAATTCTAAATCAGCAGGCCAATT
TACCATCAAACAGTCTGGCAAATATCCGAAAacagatattcaattttgac
atcaaatcaaaatatctgTGTACGGATATTTTCGTTGTGATTCGTAACAA
AACCTTAGGGCGGCCCACATCGTGTGGGCTTCGCAAAAACATGGATGTGC
TGGGATGTGAACAAATccaattttttctagaaaaccAACTACCCTCAGTG
ATATTTAACCTGAGACAAAAAATGTGGGAATTGTAATTAGGTTTCTAAAC
TTGGTGTCCCTTCCTTCGGGTAAatgtatgttttgaattgaattgaattg
tgCGGGCCACACCTAGGGTCGTTTCGTAACCTCCTTTTGCCGAGGCATGA
CTCCCGGTCCCGGGACGTCattggaatatcagataattttTTATATGACC
AATCTGGCACTTAATAGTGTCCATGCAACTTGTTTTAGATTTACGAAAAA
TAGACCCCAGAAAAGCCCGGAAGCATTGTAAAGTTTACAAATTACTCAAA
CTCctcacaatttttcaaaaacatgaaGTTCGAGTAAGTTTGAGTAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049719-exon-scaffold_165-1491911889:67454..69003 | TCONS_00049719-exon-scaffold_165-1491911889:67454..69003 | Clytia hemisphaerica | exon |
| TCONS_00049719-exon-scaffold_165-1510915933:67454..69003 | TCONS_00049719-exon-scaffold_165-1510915933:67454..69003 | Clytia hemisphaerica | exon |
| TCONS_00049719-exon-scaffold_165-1575043694:67454..69003 | TCONS_00049719-exon-scaffold_165-1575043694:67454..69003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:67454..69003 . |
Blast
The following BLAST results are available for this feature:
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