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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049700 ID=TCONS_00049700|Name=TCONS_00049700|organism=Clytia hemisphaerica|type=transcript|length=121bp
AGCAAGCAGAGAGCAGAGCAGAGCAGACACAGAACACATCAACATCAAAA
TTGCTGACAATCCtgttaaaattctttaaaaagaccATAGAATTGTAAAA
GGATTCCCAATTCAAGATGTT Run BLAST on NCBI transcript from alignment at scaffold_165:74775..76420- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049700 ID=TCONS_00049700|Name=TCONS_00049700|organism=Clytia hemisphaerica|type=transcript|length=1646bp|location=Sequence derived from alignment at scaffold_165:74775..76420- (Clytia hemisphaerica)
AGCAAGCAGAGAGCAGAGCAGAGCAGACACAGAACACATCAACATCAAAA
TTGCTGACAATCCTGTTAAAATTCTTTAAAAAGACCATAGAATTGTAAAA
GGTGAGTTTGTTAAATGATTTTCTTTCCATCATAAAGCTTTTATAAGAAA
TGAAAGTGTTACAGAGTCATTTTCTTTCCTGGCAAAAGTTGCCCTCTATC
TAAGAAAGGCTTCCCTTTTTATGCTTTTTATCAGGCCTTGATAATGATGC
TGAAACTTTACACTTCATCCCACTCTGTGACGCTGTGGTATAGTGGTCAT
TGACCTTGGTTGCTACGCAGGAGACTGAGGTTCGATTCCCACTCGCAGCG
GTTCACTTAGCAAGTGAATGAACCTCTGCCCGGGTCAACCCATGCCATGT
GAGGGGGAATTTATTGGGTACTTTGAGATCGGGTAACTTGCATCAGTGGA
GGCAAACATGCATAGCCCTCAATTGAATGACCTGTCTGGTCATTAAAATA
CAAAGTTAAATCAAAACAAAAATTGTAGAGTAGAGCTGAGAGGGGAGCTG
CGTAGTTCATTTGTTTTGAAATTTTGCTGCTTTGATTGGTCAGTCATTTG
ATGGCTATGCAAGTTTCCCTCAACTGATGCAAGTTACCCGACTTCACGGT
AGTTAGTTCAAGGTGCTGACAGGGCGCTAATTGAAAGCGTCTATATATAC
TTGTGAAAATGGGCCTTAAAAGCCCCATGCGACTCAACCAAATAGATAGA
TATATAGACTTCCTTGGCCTTTGGTTATTTGCTGCATCAATCCTTCACTT
TAGTCACTCCAATAGATCTTTTCAATAATGCCTCAACCATCTTAAACTAA
GCAAATTGTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGCTGGGATATCTTGAATCATGGGCAAAATAGCAAC
AACTGCTAACAGCCAATGAGAGATAAGCAAGTTGTTTTGGATAGACTTAG
GTATAAAATGCTAGGAGTAGTTGCTATCTTGCCCATCGTTAAAGATTAGA
TGTATTATTAATACCAACAATCACGAAAAATTTGAACGTGCATGTAGTTT
TGACCTCCCTGTCCAAAATACCTAGTGAAAACGCTTCAAGTAAGGCTAAT
CTAATCTATTTTGAAGACCGTTCCAAAAAAAGTTTGTTTACATTCACTCA
ACTTTAGTAAAGTAAAGTTTTTACATGCACGTTCAACGTTTTCTTGAATT
GCCAGTTTACATTACGTTAGTATTATTTAAGTTAGTATTGATAGTGAGGG
TATCAGAGTGGGATTGCCTGGAAGACTTTTGCTTGTGGATACACAGCTAG
CACTGGTGACGTAATCTAACAAAACTTCAGCACTGTAGTGTTGTGCGCTT
TAAAATCTGTGACAGAGTGAAAGTCAAATACCATAGTTTTTGAAATTTTC
TTTCTTTTCTTTTTATACCTATTCAGGATTCCCAATTCAAGATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049700-exon-scaffold_165-1575043694:76320..76420 | TCONS_00049700-exon-scaffold_165-1575043694:76320..76420 | Clytia hemisphaerica | exon |
| TCONS_00049700-exon-scaffold_165-1575043694:74775..74794 | TCONS_00049700-exon-scaffold_165-1575043694:74775..74794 | Clytia hemisphaerica | exon |
| TCONS_00049700-exon-scaffold_165-1510915933:76320..76420 | TCONS_00049700-exon-scaffold_165-1510915933:76320..76420 | Clytia hemisphaerica | exon |
| TCONS_00049700-exon-scaffold_165-1510915933:74775..74794 | TCONS_00049700-exon-scaffold_165-1510915933:74775..74794 | Clytia hemisphaerica | exon |
| TCONS_00049700-exon-scaffold_165-1491911889:76320..76420 | TCONS_00049700-exon-scaffold_165-1491911889:76320..76420 | Clytia hemisphaerica | exon |
| TCONS_00049700-exon-scaffold_165-1491911889:74775..74794 | TCONS_00049700-exon-scaffold_165-1491911889:74775..74794 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:74775..76420 - |
Blast
The following BLAST results are available for this feature:
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