TCONS_00049684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049684
Unique NameTCONS_00049684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049684 ID=TCONS_00049684|Name=TCONS_00049684|organism=Clytia hemisphaerica|type=transcript|length=361bp
ATCATGAAAGAAATACATTTCGGTGGAAAGATATTCAACTATgatcaaag
aagaaaaattccaCTATTTGAAGATGTTCTTTTGGCAACTCGCCAGTATA
AAGTTGTACATTTTATCGAGATGGTACCCTACCTGCCGTTCACAGGGGAT
ACCATTGAGGCTGCAAAAACTGGTCAGTTGGTTGCTTCTATGGTAACACG
ACTTGGTATGGTAAATAACGTTTTCGTTATGTCAAGTGATTTCCGTAAAG
TTGCAGCTGCCAAGGCTGCTAATCCACAAATTTCCACAGTTGCATTGTTT
GGCTCACCTGGTTTGTTATTCCCAAAAGCTGTCTACGTAAAGGAATTCGA
AAAGGCGGGNN
Run BLAST on NCBI

protein sequence of TCONS_00049684-protein

>TCONS_00049684-protein ID=TCONS_00049684-protein|Name=TCONS_00049684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
IMKEIHFGGKIFNYDQRRKIPLFEDVLLATRQYKVVHFIEMVPYLPFTGD
TIEAAKTGQLVASMVTRLGMVNNVFVMSSDFRKVAAAKAANPQISTVALF
GSPGLLFPKAVYVKEFEKAX
Run BLAST on NCBI

transcript from alignment at scaffold_165:93074..95159+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049684 ID=TCONS_00049684|Name=TCONS_00049684|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at scaffold_165:93074..95159+ (Clytia hemisphaerica)
ATCATGAAAGAAATACATTTCGGCGAGTAATGCAAAAGTTTAAGTTTCGC
ATAGCTAAGTAAAACTTCAAGTGatcctgaccagcggcacatccccgtaT
CAAAATATCAAATCTTCAAGAGAGTCGGTAAAACTCATTTTTGGGCTTCT
TAGCTCTTAACTCTTTATTTTGGAAACGACAACTTATTAAAATCGAActa
tctcagctttggaaatAGCAAGATTGGTCAAGTTTGGGTTCATAGTTGAC
ATCGGTCAACAATTCCCAGTTTTTCCCTGGTAGATAATAGGTTAGTATAA
CGTTTGATATTTAAATCATGAGATACACATTATACCTCATAACGAAAGTA
TTTGTATTTACTTTAGCGTATGACGGGTGTTAATAAAGTTGTAGCCGAGA
GTACTTACGAAGAGCTTTAAAAACTTGACATCATGAAAGAAATACATTTC
GGTAAGTAAGGCAATAGTTTAATTTGCGTATAAGTAAGTACAACTGTTAA
CTTTTATTTAAATGTGAGCAAAGGATAACATGCAAAGTCAGATAttcaat
agatattcaatttcccgaaatgattgaataggttttggagattgaaatat
taagtatataagtcataaaatttccaataaattatgaggattttaaCTTA
TATAAAGATTTGTCCCTTTTCTTTTTGCAACACAATGTATATGGTAAATA
GCAATGGGCCCGCGGTATCCCCGACCTAGAAAGAGCCCTTATGATGAAAA
AGAGCTTCGAAAGATAAGGAACACCAATAAGGTTTTTTAGtttcttttgt
aaaataaagatgaaaatgaagaagaccatttttttcgtttttttaataGA
CCCATAATCTTGagctttgaactttttgaaactttcaactTCGCTGATTT
CAAGTTACATACTATAGACAGAGTTTCAGAATGAATCCAGAGCCTTCCAC
GGGAGGTACTTTGTTCATGATGTGACGGATATTTGAaatccaaagttcga
aaatcaaTCCTTTGACAGACGGAATTTCCAAAAGTTTGCCCTATTATGac
gtttttacgaccctttcagggtctatttttcaaaattttgtctccaTTTG
AGAGACTTAGGTCTAAAAGGGATCCTTATGTCTCACACGTACTAGAATCC
CATTTTGCCTAATGCCTCCCCAGGGAGCCCTCCAAAGTATGCTAAAGATG
ACCAGAGCAATCGCCACGGGAATAGACTGGAGTcatttataatgcgtgta
atacagtagtataggcgttgtatgttaatacgattattgttacgggattt
tgTTTGCAGTAACTCTAAAATTTGTACCCcttgttttctttatttcttct
aTGTCAGAATGGGTTGTCTAGCTTGCTAGGCTACCACGGGAATGGAAGTA
TAATTCATTTTGTACTCGATTTGATATACACTATCCTTACTGACTTATAA
ACCTTAGGTGGAAAGATATTCAACTATgatcaaagaagaaaaattccaCT
ATTTGAAGATGTTCTTTTGGCAACTCGCCAGTATAAAGTTGTACATTTTA
TCGAGGTAAGTATAAAAAATATAGATTTCACAAGCATAGGTAGCGCTAAA
CTCCAGGACTTTGAGTCAAATTTCTTTTGCTGATTATCTCTCTTGAAGAC
CATGAGAAATCAACGTGTACAAGTTTTGTATTACCATTAGAACTGTTATT
AGACATTTCTAATTGATGACTCGATTGGTGGTCTACTTGATGAttgtttt
gtaatattttgatatGTACTCGTTATAGTGAAATCTGTAAAACTGTATAA
CAGATTGTGCAGGATTTTCAAAGGTTATTTTTCTATTCTACACAGATGGT
ACCCTACCTGCCGTTCACAGGGGATACCATTGAGGCTGCAAAAACTGGTC
AGTTGGTTGCTTCTATGGTAACACGACTTGGTATGGTAAATAACGTTTTC
GTTATGTCAAGTGATTTCCGTAAAGTTGCAGCTGCCAAGGCTGCTAATCC
ACAAATTTCCACAGTTGCATTGTTTGGCTCACCTGGTTTGTTATTCCCAA
AAGCTGTCTACGTAAAGGAATTCGAAAAGGCGGGNN

Coding sequence (CDS) from alignment at scaffold_165:93074..95159+

>TCONS_00049684 ID=TCONS_00049684|Name=TCONS_00049684|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_165:93074..95159+ (Clytia hemisphaerica)
ATCATGAAAGAAATACATTTCGGTGGAAAGATATTCAACTATgatcaaag
aagaaaaattccaCTATTTGAAGATGTTCTTTTGGCAACTCGCCAGTATA
AAGTTGTACATTTTATCGAGATGGTACCCTACCTGCCGTTCACAGGGGAT
ACCATTGAGGCTGCAAAAACTGGTCAGTTGGTTGCTTCTATGGTAACACG
ACTTGGTATGGTAAATAACGTTTTCGTTATGTCAAGTGATTTCCGTAAAG
TTGCAGCTGCCAAGGCTGCTAATCCACAAATTTCCACAGTTGCATTGTTT
GGCTCACCTGGTTTGTTATTCCCAAAAGCTGTCTACGTAAAGGAATTCGA
AAAGGCGGGNATCATGAAAGAAATACATTTCGGTGGAAAGATATTCAACT
ATgatcaaagaagaaaaattccaCTATTTGAAGATGTTCTTTTGGCAACT
CGCCAGTATAAAGTTGTACATTTTATCGAGATGGTACCCTACCTGCCGTT
CACAGGGGATACCATTGAGGCTGCAAAAACTGGTCAGTTGGTTGCTTCTA
TGGTAACACGACTTGGTATGGTAAATAACGTTTTCGTTATGTCAAGTGAT
TTCCGTAAAGTTGCAGCTGCCAAGGCTGCTAATCCACAAATTTCCACAGT
TGCATTGTTTGGCTCACCTGGTTTGTTATTCCCAAAAGCTGTCTACGTAA
AGGAATTCGAAAAGGCGGGNATCATGAAAGAAATACATTTCGGTGGAAAG
ATATTCAACTATgatcaaagaagaaaaattccaCTATTTGAAGATGTTCT
TTTGGCAACTCGCCAGTATAAAGTTGTACATTTTATCGAGATGGTACCCT
ACCTGCCGTTCACAGGGGATACCATTGAGGCTGCAAAAACTGGTCAGTTG
GTTGCTTCTATGGTAACACGACTTGGTATGGTAAATAACGTTTTCGTTAT
GTCAAGTGATTTCCGTAAAGTTGCAGCTGCCAAGGCTGCTAATCCACAAA
TTTCCACAGTTGCATTGTTTGGCTCACCTGGTTTGTTATTCCCAAAAGCT
GTCTACGTAAAGGAATTCGAAAAGGCGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031505XLOC_031505Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049684-proteinTCONS_00049684-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049684-exon-scaffold_165-1491911889:93074..93095TCONS_00049684-exon-scaffold_165-1491911889:93074..93095Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1510915933:93074..93095TCONS_00049684-exon-scaffold_165-1510915933:93074..93095Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1575043694:93074..93095TCONS_00049684-exon-scaffold_165-1575043694:93074..93095Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1491911889:94531..94628TCONS_00049684-exon-scaffold_165-1491911889:94531..94628Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1510915933:94531..94628TCONS_00049684-exon-scaffold_165-1510915933:94531..94628Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1575043694:94531..94628TCONS_00049684-exon-scaffold_165-1575043694:94531..94628Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1491911889:94919..95159TCONS_00049684-exon-scaffold_165-1491911889:94919..95159Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1510915933:94919..95159TCONS_00049684-exon-scaffold_165-1510915933:94919..95159Clytia hemisphaericaexon
TCONS_00049684-exon-scaffold_165-1575043694:94919..95159TCONS_00049684-exon-scaffold_165-1575043694:94919..95159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:93074..95159 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.335196	0	0.297044	0	0	7.30759	4.51297	16.7736	0	0	0	0.308951	0	0	0	0	0	0	0	0.320046	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017946PLC-like_Pdiesterase_TIM-brl
Vocabulary: Molecular Function
TermDefinition
GO:0008081phosphoric diester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
molecular_function GO:0008081 phosphoric diester hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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