|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049685 ID=TCONS_00049685|Name=TCONS_00049685|organism=Clytia hemisphaerica|type=transcript|length=421bp
ATGACGGGTGTTAATAAAGTTGTAGCCGAGAGTACTTACGAAGAGCTTTA
AAAACTTGACATCATGAAAGAAATACATTTCGGTGGAAAGATATTCAACT
ATgatcaaagaagaaaaattccaCTATTTGAAGATGTTCTTTTGGCAACT
CGCCAGTATAAAGTTGTACATTTTATCGAGATGGTACCCTACCTGCCGTT
CACAGGGGATACCATTGAGGCTGCAAAAACTGGTCAGTTGGTTGCTTCTA
TGGTAACACGACTTGGTATGGTAAATAACGTTTTCGTTATGTCAAGTGAT
TTCCGTAAAGTTGCAGCTGCCAAGGCTGCTAATCCACAAATTTCCACAGT
TGCATTGTTTGGCTCACCTGGTTTGTTATTCCCAAAAGCTGTCTACGTAA
AGGAATTCGAAAAGGCGGGNN Run BLAST on NCBI transcript from alignment at scaffold_165:93443..95159+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049685 ID=TCONS_00049685|Name=TCONS_00049685|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at scaffold_165:93443..95159+ (Clytia hemisphaerica)
ATGACGGGTGTTAATAAAGTTGTAGCCGAGAGTACTTACGAAGAGCTTTA
AAAACTTGACATCATGAAAGAAATACATTTCGGTAAGTAAGGCAATAGTT
TAATTTGCGTATAAGTAAGTACAACTGTTAACTTTTATTTAAATGTGAGC
AAAGGATAACATGCAAAGTCAGATAttcaatagatattcaatttcccgaa
atgattgaataggttttggagattgaaatattaagtatataagtcataaa
atttccaataaattatgaggattttaaCTTATATAAAGATTTGTCCCTTT
TCTTTTTGCAACACAATGTATATGGTAAATAGCAATGGGCCCGCGGTATC
CCCGACCTAGAAAGAGCCCTTATGATGAAAAAGAGCTTCGAAAGATAAGG
AACACCAATAAGGTTTTTTAGtttcttttgtaaaataaagatgaaaatga
agaagaccatttttttcgtttttttaataGACCCATAATCTTGagctttg
aactttttgaaactttcaactTCGCTGATTTCAAGTTACATACTATAGAC
AGAGTTTCAGAATGAATCCAGAGCCTTCCACGGGAGGTACTTTGTTCATG
ATGTGACGGATATTTGAaatccaaagttcgaaaatcaaTCCTTTGACAGA
CGGAATTTCCAAAAGTTTGCCCTATTATGacgtttttacgaccctttcag
ggtctatttttcaaaattttgtctccaTTTGAGAGACTTAGGTCTAAAAG
GGATCCTTATGTCTCACACGTACTAGAATCCCATTTTGCCTAATGCCTCC
CCAGGGAGCCCTCCAAAGTATGCTAAAGATGACCAGAGCAATCGCCACGG
GAATAGACTGGAGTcatttataatgcgtgtaatacagtagtataggcgtt
gtatgttaatacgattattgttacgggattttgTTTGCAGTAACTCTAAA
ATTTGTACCCcttgttttctttatttcttctaTGTCAGAATGGGTTGTCT
AGCTTGCTAGGCTACCACGGGAATGGAAGTATAATTCATTTTGTACTCGA
TTTGATATACACTATCCTTACTGACTTATAAACCTTAGGTGGAAAGATAT
TCAACTATgatcaaagaagaaaaattccaCTATTTGAAGATGTTCTTTTG
GCAACTCGCCAGTATAAAGTTGTACATTTTATCGAGGTAAGTATAAAAAA
TATAGATTTCACAAGCATAGGTAGCGCTAAACTCCAGGACTTTGAGTCAA
ATTTCTTTTGCTGATTATCTCTCTTGAAGACCATGAGAAATCAACGTGTA
CAAGTTTTGTATTACCATTAGAACTGTTATTAGACATTTCTAATTGATGA
CTCGATTGGTGGTCTACTTGATGAttgttttgtaatattttgatatGTAC
TCGTTATAGTGAAATCTGTAAAACTGTATAACAGATTGTGCAGGATTTTC
AAAGGTTATTTTTCTATTCTACACAGATGGTACCCTACCTGCCGTTCACA
GGGGATACCATTGAGGCTGCAAAAACTGGTCAGTTGGTTGCTTCTATGGT
AACACGACTTGGTATGGTAAATAACGTTTTCGTTATGTCAAGTGATTTCC
GTAAAGTTGCAGCTGCCAAGGCTGCTAATCCACAAATTTCCACAGTTGCA
TTGTTTGGCTCACCTGGTTTGTTATTCCCAAAAGCTGTCTACGTAAAGGA
ATTCGAAAAGGCGGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049685-exon-scaffold_165-1491911889:93443..93524 | TCONS_00049685-exon-scaffold_165-1491911889:93443..93524 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1510915933:93443..93524 | TCONS_00049685-exon-scaffold_165-1510915933:93443..93524 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1575043694:93443..93524 | TCONS_00049685-exon-scaffold_165-1575043694:93443..93524 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1491911889:94531..94628 | TCONS_00049685-exon-scaffold_165-1491911889:94531..94628 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1510915933:94531..94628 | TCONS_00049685-exon-scaffold_165-1510915933:94531..94628 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1575043694:94531..94628 | TCONS_00049685-exon-scaffold_165-1575043694:94531..94628 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1491911889:94919..95159 | TCONS_00049685-exon-scaffold_165-1491911889:94919..95159 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1510915933:94919..95159 | TCONS_00049685-exon-scaffold_165-1510915933:94919..95159 | Clytia hemisphaerica | exon |
| TCONS_00049685-exon-scaffold_165-1575043694:94919..95159 | TCONS_00049685-exon-scaffold_165-1575043694:94919..95159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:93443..95159 + |
Blast
The following BLAST results are available for this feature:
|
