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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049688 ID=TCONS_00049688|Name=TCONS_00049688|organism=Clytia hemisphaerica|type=transcript|length=5352bpRun BLAST on NCBI transcript from alignment at scaffold_165:127174..161827+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049688 ID=TCONS_00049688|Name=TCONS_00049688|organism=Clytia hemisphaerica|type=transcript|length=34654bp|location=Sequence derived from alignment at scaffold_165:127174..161827+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049688 vs. Swiss-Prot (Human)
Match: WDR90 (WD repeat-containing protein 90 OS=Homo sapiens GN=WDR90 PE=1 SV=2) HSP 1 Score: 423.705 bits (1088), Expect = 1.515e-121 Identity = 235/723 (32.50%), Postives = 390/723 (53.94%), Query Frame = 3
Query: 39 DPILKLSQIIGFDGSTSTKVFWTKDGGNVVYPSHGCIVKYDVTSGRQQFMIGHNEEVTSLCLCETDNNILFSAQRGQNSIIRTWKVQSLKCINIFQTNIADIHCMSVSPNDEFLCMVGLDSHQKQVLAVWDVSSVVKGGAASLIAKVHTELRADTITCVKFIPNDNNRLMTCGKSNMRVWRLKPKQLKSCAIELGQYLDVVFTDMAFERRKKLVEDPTDFKIFVSSSAGKLFVVTYKSLTVTKVFDL----------------SQGKQLSLNCIALSDNYCAVGCSDGYLRVWPISFQSVYLEAEHEGAVNVVSISEDGSKILAGTDMGNLGTIDIIQKSYSTITRSHLSPIISTSLNPVHQQIASISEDRTIKLWDLDTFQQVYDFQSPNEALTSVSCHPNSPELACGFVTGAVRIFXXXXXXXXXXXXQHTDTILSTAYSPNGQYLYSAGGDGALIQYNVSD-DYDVLKMTENLVCKEPELPSYVLEIDSLGNRGAVIGASSYLITVFSAKTLDELLVIDISCTFKEXXXXXXXXXXXXXXXLMDKPIGLIFSPSITGSELLVITMDSRLLKFNSKSGQILTEISNIHKGTPTSFCCCPRGYFIATAGDYCIKVWDYKMEES---QVFIGHCSDVSSLAFTNDCRKLISSGEMIAVWDFIPFFKQDNSVNDREVPSQAFPEIQE--HSPPGPQPLE-----TSMLPREDQPMPRQ--PPQL 2120
DP+L+L +IGF G + + WT DG VVYP H IV V +G Q+F +GH ++V++L L + +++L SAQ S++R W Q+ +C+ +F++ + + +S S + LC VG D H + ++ W V GG ++AK HT+ F D R+ +CG+ ++R+WRL+ L+SC ++LG++ + FTD+AF++ + +P+ +FV S +G + + + + V L S G ++++ +++S CAVG DG+LR+WP+ F SV LEAEHEG V+ V +S DG ++L+ T G+LG +D + + Y + RSH +P+++ ++ Q+A++S+DRT+++WDL T QQ+YDF S +A +V+ HP P CGF +GAVR FSL + E H + +P+G+ L+S+ G+L QY+ +D + VL++ ++VC + L + G A +G S +TV + +LDELL +DI + + + +D + + F P+ G LLV T +R++ ++ SG+I+ E+ +H S F+ A IKVWDY + S QV+IGH V ++AF+ D ++++S+G+ + +WD + + D Q+FP + PG PLE S LPR+ P P Q PP+L
Sbjct: 356 DPVLRLKGVIGFGGHGTRQALWTPDGAAVVYPCHAVIVVLLVDTGEQRFFLGHTDKVSALAL-DGSSSLLASAQARAPSVMRLWDFQTGRCLCLFRSPMHVVCSLSFSDSGALLCGVGKDHHGRTMVVAWGTGQVGLGGEVVVLAKAHTDFDVQAFRVTFF---DETRMASCGQGSVRLWRLRGGVLRSCPVDLGEHHALQFTDLAFKQARDGCPEPSAAMLFVCSRSGHILEIDCQRMVVRHARRLLPTRTPGGPHPQKQTFSSGPGIAISSLSVSPAMCAVGSEDGFLRLWPLDFSSVLLEAEHEGPVSSVCVSPDGLRVLSATSSGHLGFLDTLSRVYHMLARSHTAPVLALAMEQRRGQLATVSQDRTVRIWDLATLQQLYDFTSSEDAPCAVTFHPTRPTFFCGFSSGAVRSFSLEAAEVLVEHTCHRGAVTGLTATPDGRLLFSSCSQGSLAQYSCADPQWHVLRVAADMVCPDAPASPSALAVSRDGRLLAFVGPSRCTVTVMGSASLDELLRVDIG-------------TLDLASSRLDSAMAVCFGPAALG-HLLVSTSSNRVVVLDAVSGRIIRELPGVHPEPCPSLTLSEDARFLLIAAGRTIKVWDYATQASPGPQVYIGHSEPVQAVAFSPDQQQVLSAGDAVFLWDVLAPTESD----------QSFPGAPPACKTGPGAGPLEDAASRASELPRQQVPKPCQASPPRL 1050 HSP 2 Score: 398.667 bits (1023), Expect = 2.050e-113 Identity = 220/680 (32.35%), Postives = 360/680 (52.94%), Query Frame = 3
Query: 2439 PTHQAGMRLTEIIGANGNARRNVIWEPDSGLFIYTEGCHLVSEDLANGRQEVFYNAVEEISTIALQYDGKFVAVGCAYNPMTKFGPIVIWDLANKRIEKTLEHHNCSIIGLQFSRDDRFLLSVSDYRECSITIWACQDYTVVCQATTDYPIHAAIWHPYNANEMVTVGRNATLLFWYLNDENYQEMKLEVSPAEFPKEVFRPGDENHDVTSLACSGKDQLLTGTSNGVICVWSIADRRCFMHWQADNTEICSLSGSCGHVLTGSASKNIRLWKLPNIQSILTQADSTKSQKGVVMEREQTLDAPITSLVFDENLEMGLASTTNGSIWYINWSEPEAECVRIISGHQNKINSLVSCVGNDDFVATACADGSLKLWAMDSRDQAAQFLVIGQECTCVTFCAEHVDNKNTKELLEYNQVVHPLKRYEEQPSQCLAGYQDGTVRMFDFGQMKMLLKTKPHSCRVTSIAASFDGRVGISGSDDGLLVISSLTTGMTVRVFNDHRGGALCRIXXXXXXXXXXXXXXX----XXXXDCRISVWRSDWSKDICELNDWITFVRPSYSSDQGADNEAIPCLAVFSPSNSDLLVYTGYTVQKEISFYSMIKRKVVKTVSISNWILALDISPCGNLLAAGTKDRLVKLIDCESGTFQDFVGHYEAVQHAKFVKSGKALVSSAHSELLKWDV 4466
P +RL ++G +GN R N++W PD+G F YT G +V EDL +G Q+ + EIST+AL + + +A + T I +WD++ + + H+ +++ L FS DDR L+++ D+ ++ +W Y +V P+H ++P++A E+ VG+ T+ FW L ++ L+V P+ V ++TSL L GTS+G +CVW RCF+ W+AD+ I L S +++GS++ +RLW + + + + S V ME E LD + S FD++++MG+ TT G++W+++W+ E R+ISGH++K+N +V G + AT DGS+++WA+ S + QF V+ Q C C+ + + L AGY DG++R+F + M LK PH +T++A S DG+ +SG DGL+ +S TG T RV +DH+G + I + A+S D R+SVW SDW ++ CEL DW++F P+ + QG P LA F P + LL+Y G V KE+ Y++ +++VV+ + + + ++L +SP +LLA G + +++L+DC GT QDF GH AV +F S + L ++A +E+L W+V
Sbjct: 1102 PASGGWLRLKAVVGYSGNGRANMVWRPDTGFFAYTCGRLVVVEDLHSGAQQHWSGHSAEISTLALSHSAQVLASASGRSSTTAHCQIRVWDVSGGLCQHLIFPHSTTVLALAFSPDDRLLVTLGDHDGRTLALWGTATYDLVSSTRLPEPVHGVAFNPWDAGELTCVGQG-TVTFWLLQQRG-ADISLQVRREPVPEAV-----GAGELTSLCYGAPPLLYCGTSSGQVCVWDTRAGRCFLSWEADDGGIGLLLFSGSRLVSGSSTGRLRLWAVGAVSELRCKGSGASS---VFMEHELVLDGAVVSASFDDSVDMGVVGTTAGTLWFVSWA--EGTSTRLISGHRSKVNEVVFSPG-ESHCATCSEDGSVRVWALASMELVIQFQVLNQSCLCLAWSPPCCGRPEQQRL--------------------AAGYGDGSLRIFSVSRTAMELKMHPHPVALTTVAFSTDGQTVLSGDKDGLVAVSHPCTGTTFRVLSDHQGAPISTICVTCKECEDLGVEGTDLWLAASGDQRVSVWASDWLRNHCELVDWLSFPMPATTETQG---HLPPSLAAFCPWDGALLMYVGPGVYKEVIIYNLCQKQVVEKIPLPFFAMSLSLSPGTHLLAVGFAECMLRLVDCAMGTAQDFAGHDNAVHLCRFTPSARLLFTAARNEILVWEV 1745 HSP 3 Score: 117.087 bits (292), Expect = 7.210e-26 Identity = 108/458 (23.58%), Postives = 193/458 (42.14%), Query Frame = 3
Query: 48 LKLSQIIGFDGSTSTKVFWTKDGGNVVYPSHGCIVKYDVTSGRQQFMIGHNEEVTSLCLCETDNNILFSAQRGQNSI---IRTWKVQSLKCINIFQTNIADIHCMSVSPNDEFLCMVGLDSHQKQVLAVWDVSSVVKGGAASLIAKVHTELRADTITCVKFIPNDNNRLMTCGKSNMRVWRLKPKQLKSCAIELGQYLDVVFTDMAFERRKKLVEDPTDFKIFVSSSAGKLFVVTYKSLTVTKVFDLSQGKQLSLNCIALSDNYCAVGCSDGYLRVWPISF-----------QSVYLEAEH--EGAVNVVSISEDGSKILAGTDMGNLGTIDIIQKSYSTITRSHLSPIISTSLNPVHQQIASISEDRTIKLWDLDTFQQVYDFQSPNEALTSVSCHP---NSPE---LACGFVTGAVRIFXXXXXXXXXXXXQHTDTILSTAYSPNGQYLYSAGGDG 1355
L+L ++G+ G+ + W D G Y +V D+ SG QQ GH+ E+++L L + + ++ R + IR W V C ++ + + ++ SP+D L V L H + LA+W ++ + L VH V F P D L G+ + W L Q + I L + V + L ++ +S+G++ V ++ + F + + + S + G S G LR+W + SV++E E +GAV S + + GT G L + + + + + H S + +P A+ SED ++++W L + + V FQ N++ ++ P PE LA G+ G++RIFS+S T ++ ++ H + + A+S +GQ + S DG
Sbjct: 1108 LRLKAVVGYSGNGRANMVWRPDTGFFAYTCGRLVVVEDLHSGAQQHWSGHSAEISTLALSHSAQVLASASGRSSTTAHCQIRVWDVSGGLCQHLIFPHSTTVLALAFSPDDRLL--VTLGDHDGRTLALWGTATYDLVSSTRLPEPVHG---------VAFNPWDAGELTCVGQGTVTFWLL---QQRGADISLQVRREPVPEAVGAGELTSLCYGAPPL-LYCGTSSGQVCVWDTRA---GRCFLSWEADDGGIGLLLFSGSRLVSGSSTGRLRLWAVGAVSELRCKGSGASSVFMEHELVLDGAVVSASFDDSVDMGVVGTTAGTLWFVSWAEGTSTRLISGHRSKVNEVVFSPGESHCATCSEDGSVRVWALASMELVIQFQVLNQSCLCLAWSPPCCGRPEQQRLAAGYGDGSLRIFSVSRTAMELKMHPHPVALTTVAFSTDGQTVLSGDKDG 1547 The following BLAST results are available for this feature:
BLAST of TCONS_00049688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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