TCONS_00049689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049689
Unique NameTCONS_00049689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049689 ID=TCONS_00049689|Name=TCONS_00049689|organism=Clytia hemisphaerica|type=transcript|length=1967bp
GGTTGTCAAAGCAAGTTTTCAGAAAATGGGTTAATGGTAAGCAACCCCAG
GTTTGGACCAAAAATTGGAGTTActtataaaaagatttttaaccctttta
ttttattaccgtacatcctgtgcccaagttcaggagttgccataaagcca
ttatggtaataaccgggagggcacattgctatacattttAACCCTTTTAt
taacgaaaaaaaattctctacaGGAATGTACTTGCGTAACATTCTGTGCA
GAACATGTTGACAATAAAAATACCAAGGAGTTGTTAGAATACAACCAAGT
GGTTCATCCACTCAAAAGATATGAAGAACAGCCTTCCCAATGTTTGGCTG
GATACCAAGATGGTACCGTACGGATGTTTGATTTCGGTCAAATGAAGATG
CTGTTGAAAACGAAACCGCATTCTTGTAGAGTTACATCCATTGCTGCCTC
ATTTGATGGGAGAGTTGGCATCAGTGGTAGTGACGATGGATTACTGGTGA
TTTCAAGCTTAACGACTGGCATGACTGTTCGAGTGTTCAATGACCACAGA
GGAGGAGCTCTTTGCAGGATTACTCAACAACAGACTCAAAATTCGTTATC
ATCTTCTCTGTGGTTGGCGTCCAGTTCGGATTGCAGGATCAGCGTTTGGC
GATCTGATTGGTCGAAAGATATTTGTGAACTCAATGATTGGATCACATTT
GTACGACCGAGTTATTCATCTGATCAAGGTGCCGACAATgAGGCAATACC
ATGTCTAGCAGTGTTCAGCCCAAGTAATTCTGATTTGTTGGTTTACACCG
GATACACTGTTCAAAAAGAAATCTCTTTTTATAGCATGATCAAACGAAAG
GTTGTGAAGACGGTGTCCATATCAAATTGGATTTTAGCCTTGGATATTTC
ACCGTGTGGAAATCTCCTTGCTGCCGGGACAAAAgATCGTTTGGTAAAAC
TCATCGATTGTGAAAGTGGAACGTTCCAAGATTTCGTAGGCCATTACGAA
GCTGTCCAACACGCAAAATTTGTCAAATCTGGTAAAGCGCTGGTATCGTC
CGCTCATTCAGAACTTTTGAAATGGGACGTTTTAATTTGATCCAGATATA
TACCAAGAATCCTTAAAGTCCGCATACTCATGCTTTCGTATAAAACACTA
CGCCATGAATATCAAGGATACACGAGTTTAGTGCTCGCAATTAGTCGTTA
TTGCCTGTATTTACAGTATTGGCCTAATGTGTCTGTTGTGATGtatagac
acccctgtctcacagacccggCGGAGCTTCTTTCCACCCGTTTGGAtgaa
aatttatatcaaaatcccGAGAGAAATTCTATCGTTTCAGGTTAAAAAGT
CTAGTGGGAATGGCTTTGGTGTGCCAAATTTTTCCGGATATGAAACAAAG
TCATTTTTCCAGTGTCGTTGAGATTCAAGGATTCCATTGGGTACTGGGTT
TGTGACAGGGGGTGTGTATAGCCTCGTCCCTCATTGTCGCCTTTTTTAAC
AAAGTATATTTATTTCATAATTCACACTGGTATACTTATGGCGACATCCT
CGAAAATTGAgattatgaaaacaaaagtaaaaaaatggatGACTCCCTTG
TCAAATTCGGTTTGTTGGATTTGTAATCCGGCACTTTCTCGTGAAAATTG
AAGCTAAACGGTAATCTAAAAAGATATTGTTCAGTTTTGTGAAGAGTAAA
TAGACCATAGGCAATATAAACGTCAATTGTACACTCTCTTTGATGTGAGG
ACAAATAttaaaggaataaattttggtgagaatttaatttggcggatggc
cgaaaaagttttttctttaacttggtggttaacttgaaaaactaaatttg
gcgggaatttaatttggcggacgaaggatatttttgtccaaaaaacgcca
ttaaaagttttaaagcctgaaatagcacacatttggggggGGATAGATAG
AGCAtctttaatttggc
Run BLAST on NCBI

transcript from alignment at scaffold_165:155669..161827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049689 ID=TCONS_00049689|Name=TCONS_00049689|organism=Clytia hemisphaerica|type=transcript|length=6159bp|location=Sequence derived from alignment at scaffold_165:155669..161827+ (Clytia hemisphaerica)
GGTTGTCAAAGCAAGTTTTCAGAAAATGGGTTAATGGTAAGCAACCCCAG
GTTTGGACCAAAAATTGGAGTTActtataaaaagatttttaaccctttta
ttttattaccgtacatcctgtgcccaagttcaggagttgccataaagcca
ttatggtaataaccgggagggcacattgctatacattttAACCCTTTTAt
taacgaaaaaaaattctctacaGGAATGTACTTGCGTAACATTCTGTGCA
GAACATGTTGACAATAAAAATACCAAGGAGTTGTTAGAATACAACCAAGT
GGTTCATCCACTCAAAAGATATGAAGAACAGCCTTCCCAATGTTTGGCTG
GATACCAAGATGGTACCGTACGGATGTTTGATTTCGGTCAAATGAAGATG
CTGTTGAAAACGAAACCGCATTCTTGTAGAGTTACATCCATTGCTGCCTC
ATTTGATGGTAAGTACAATTTCCCTAGCTAATTCTAAGCCGGTATTAAAA
CCTCGGgcacactgtaagggtgtgctTTTGGGACAGTGATGTCTTGCTGA
TTTGCTAACAGTAAAAAAATCCATATAATAATGAACGgctaaaaagtaaa
taaaggcACAATacgaaaatcaatttaaaaaaattaatttcactaTTTTT
TGGCCCGCAAAAGTAAATCTTGCGAAAATTAATCTGATTAAAGTGTCAAT
ACTTAATTCAAGGTAAGTTAGATAACTACTTAAAGAGGAAACAACAGAAA
ATTCTTGTCTGTAAAGTAACAATTTTTTGACAAagctgtatatatttttt
agcgcacccggtagttttacacaattttaattgttctctttgtAGGGAGA
GTTGGCATCAGTGGTAGTGACGATGGATTACTGGTGATTTCAAGCTTAAC
GACTGGCATGACTGTTCGAGTGTTCAATGACCACAGAGGAGGAGCTCTTT
GCAGGATTACTCAACAACAGGTTATATCAACTTTGTGTTCAGCTAAATTT
ATTTTGCATTAAGTGGATTAGTTTTCCCATTTCCGCGAAAGTTAGTCctc
gcgaaaaatttgaaattccgaattttggcaaaaaaatgtatcatatGTAA
AATAAAGCACCTGTcgttcatgatattcatgacttAATGTTTTCTGCGGA
GACAACCGGGTTTTTGCcaatagtggcaaattttaaacatttttcttcCT
TACTTAAATTGCCACTATACTGGGAAAAACCAGGGTGTTTCCTTAACCCT
TTGCGTGCCGTTACCTTatttttgtaccccaatccatttgccgaggggta
attttttttagtaacctgatttgccgatgtcgtatatatacgacatgcaa
ATTTTAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattaggtaaaaaaatttg
atgtcggatatatccgacattggcaagtagagtgaaaatttgcatgtcgt
atatatacgacatcggcacggaaagggttaataaACATTACTTCATAAAT
ATCATGAACTGTCAAGGTAAATAAACTAATCAGCGCAAGAAAAATACTAT
CTAGGCATTCATCACAAACAATTTTTATCGATTGTCATtataatttttat
gtcgggtgaCACCCGTCTCAGAGAGgattaaaaggaaaaaagatGCTTTC
CTCTCTGACCGTTTGctatcagcgattccgacctttctattattcccagg
tttaaagaagggtgtcagaattagatgagggatgtggACATTaaaccaac
ttacggtactttTCATTCCAGACTCAAAATTCGTTATCATCTTCTCTGTG
GTTGGCGTCCAGTTCGGATTGCAGGATCAGCGTTTGGCGATCTGATTGGT
CGAAAGATATTTGTGAACTCAATGATTGGATCACATTTGTACGACCGAGT
TATTCATCTGATCAAGGTGCCGACAATGTAAGTTAAGGAACAGAGGAGgc
aatgaaaaataattctcTTGCGTGACAACTgaaaatatgtatttttttaa
ttgataGAATTGAGCATTTAGAGCtggtataaatttcaaattacgCTGTT
TGAATTGGTTTTGTTTTCCGCTTGGTAGAAACAAAGAGTGTACACTGAAA
GCGAATTGATTTCAGGTTtggcttttttttggtaattctaatatttttaa
atattaaaagcagtctattttgaccaatttaatttttttctattattttt
aggAGGCAATACCATGTCTAGCAGTGTTCAGCCCAAGTAATTCTGATTTG
TTGGTTTACACCGGATACACTGTTCAAAAAGAAATCTCTTTTTATAGCAT
GATCAAACGAAAGGTGAGTCATCATTGTCCACAACagcctgtctcacagc
cccggtgaaaccatagaggtataaagaaaaacaggagttgaatgtgtcgg
taattggtcgttaatttcttttgatttcttttataaactgtatcaaaaga
aattctaaccTCGCCCGATAAAATAAGACTCTAATTAAGATattaaataa
aacttcgtccgtgaaacaagtttatgttcaatttcgttatccgttaaact
ttgttttgaaaagatattttctcaagccagaaaatgaaaagttctttata
agcacacatggtttcagactcaatttgtagacataaagtcgctggagaat
tttggaggaaagtatataagcaatagagttcaccttaaagaaaacaatga
tcgaaaaatcttgtcattcgATGAAGGATTGCGAAGtatacaggcctttt
tttagtccaaatattttcttacactgatgtcagaaacaatgaatctcgaa
tctattaatttttaaagcttcaatgagccaataagatttcacctatggat
aaaagagctcattaagaatgcacgatatatgactTAATGAGCATGCacac
atcgtaacttttttaatcgcagggcgagcttggttacaatagcatacatc
tcctgtttctttatacctccatggtgaAACTTCTTCCAACATTTCTGTGG
AAGTCGTaatattttgatagaaattctattgttcttaggTCAAaagattc
agtggggatggtttggGAGTTCAATATTTTctattgaattttaaatgggA
AGAATAAGAGTCATTTTTTAAGTGGGGCTGAGGTATTTTTTCCggccggg
gacgaaattttagccaaattttccagcGGGTCTGGGTTCCCAGCGGGTCA
GTGACAAAGGGGTTTTACAGGATGTAGATTTATGAACATACATTAACACA
ACAACAATGAAAAAGTATAAAGCCATCCCTCCCCTATGCAAGGCACTTAA
GTGAAAACACAAGGCAGAGTAACCTTGTCTATActgcaaatttttttcaa
agcgAAGCTCTGTCGTTTATAATATTGTGATGTCATACGCTACACTACAA
ACACGGTTAAAAAGGGGGCGTGGGCAACGTAACGATGGTGTTAAAGGACA
TCGTTTAATGTGTCCACTcgcatttgcttacacagcatttttaaacaaaa
gaaagaaaacgcTTTTCATCTTTCGGCACTGACCGAGCACAAAGTTtggg
gaattttttttgttaattatgcTGTGTCAGCATAGAGGCGAGCCGGGCCG
GGCCGGGCCGGGCCCtctttctatatcataaaaaacAATATCTTTAATTT
AATTGTATTCTTTTAGGTTGTGAAGACGGTGTCCATATCAAATTGGATTT
TAGCCTTGGATATTTCACCGTGTGGAAATCTCCTTGCTGCCGGGACAAAA
ggtattttttcaaatgacTAAGATTTCTCAACAACAGATTTTCTCCTGTG
TGGCATCGTTAGAAAATAAAGGCAATAAGAAACGCAAGTCTCGTGATTTG
ATATCGCTGAGCTTTATATAGACCCTGGAGGCAGTTTCTTAATCGAGGTC
AACCATACTCTTTAATTGATTTTTGGTGTTCTAATGGTGCAATGGCTTGT
TTTCGGGTACCACTTTGTAAAAAACTCTGAGAAAAGATGATGGATATAGC
TTAGTCCAGGGTTTATGAGGGTCAGTGCTTGATATTAGATGGGGGAACGG
GAAAAATGAGGAAATGACGCTCTCGAATAATGGTGGTATGAATAATGGTA
TGAATAATGGTCCATGAAagacttttttcttcttctctttgGCATTTAAT
GATGAAAGTGAAAACTAAGAATGgcctatacaccttttcgaccgtaaatc
cttttttgacacatttttctattgtctataggtgcgaaaaaaggactggg
acagttttagtgggataaagcgtagctacggtcgaaaaagtgtattCCAG
AAAAAAGTTGTACCTCCTTTGTTGAGGAGGCCTTTTTGGGGAAGGTGATC
CCctggatttttattttcaatttttctggaGCCCCttggattttattttc
tgattttctagACCATACTCGTAATACTAAGCACCCTGGATTTTTCTACC
TTATTTTACTGACCCAggatttttacactcgaaaaatcAGACCCCCATAG
GCGCCACACCTCCTCGACATAGGGGGTACAGGCTAGTTCTGGGATAGCCC
AGTTTGATTTCAttccttttttgacgtttctttgtcttttttaataCTAT
GATCACAAGTACAgtcatgaaaattcaaaaaattgactGGTGAACCAGAC
GTGGACCACATGTCTATACACGGTGTAAagaagacaccgaaacgtcaaGA
ATGAATAATATTAAATTCTTAGTTTtcaccaacctcgttccctgtgtaAT
ATCGGCTTCTTTATGCTTTCCTATGCGTCAGATAATATTCCCTAGCGCCA
ATCAGTAATGTAAATAAAGcttgggatacacggggacgaggttgattTGT
CACTTTTATCATTAAATTTAGCTGACTCAGCAAGAAATCTTTTCAAACCT
CATTACTCTTACAAATTTGCCTTCCAGATCGTTTGGTAAAACTCATCGAT
TGTGAAAGTGGAACGTTCCAAGATTTCGTAGGCCATTACGAAGCTGTCCA
ACACGCAAAATTTGTCAAATCTGGTAAAGCGCTGGTATCGTCCGCTCATT
CAGAACTTTTGAAATGGGACGTTTTAATTTGATCCAGATATATACCAAGA
ATCCTTAAAGTCCGCATACTCATGCTTTCGTATAAAACACTACGCCATGA
ATATCAAGGATACACGAGTTTAGTGCTCGCAATTAGTCGTTATTGCCTGT
ATTTACAGTATTGGCCTAATGTGTCTGTTGTGATGtatagacacccctgt
ctcacagacccggCGGAGCTTCTTTCCACCCGTTTGGAtgaaaatttata
tcaaaatcccGAGAGAAATTCTATCGTTTCAGGTTAAAAAGTCTAGTGGG
AATGGCTTTGGTGTGCCAAATTTTTCCGGATATGAAACAAAGTCATTTTT
CCAGTGTCGTTGAGATTCAAGGATTCCATTGGGTACTGGGTTTGTGACAG
GGGGTGTGTATAGCCTCGTCCCTCATTGTCGCCTTTTTTAACAAAGTATA
TTTATTTCATAATTCACACTGGTATACTTATGGCGACATCCTCGAAAATT
GAgattatgaaaacaaaagtaaaaaaatggatGACTCCCTTGTCAAATTC
GGTTTGTTGGATTTGTAATCCGGCACTTTCTCGTGAAAATTGAAGCTAAA
CGGTAATCTAAAAAGATATTGTTCAGTTTTGTGAAGAGTAAATAGACCAT
AGGCAATATAAACGTCAATTGTACACTCTCTTTGATGTGAGGACAAATAt
taaaggaataaattttggtgagaatttaatttggcggatggccgaaaaag
ttttttctttaacttggtggttaacttgaaaaactaaatttggcgggaat
ttaatttggcggacgaaggatatttttgtccaaaaaacgccattaaaagt
tttaaagcctgaaatagcacacatttggggggGGATAGATAGAGCAtctt
taatttggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031506XLOC_031506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049689-exon-scaffold_165-1491911889:155669..156126TCONS_00049689-exon-scaffold_165-1491911889:155669..156126Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1510915933:155669..156126TCONS_00049689-exon-scaffold_165-1510915933:155669..156126Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1575043694:155669..156126TCONS_00049689-exon-scaffold_165-1575043694:155669..156126Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1491911889:156514..156638TCONS_00049689-exon-scaffold_165-1491911889:156514..156638Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1510915933:156514..156638TCONS_00049689-exon-scaffold_165-1510915933:156514..156638Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1575043694:156514..156638TCONS_00049689-exon-scaffold_165-1575043694:156514..156638Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1491911889:157640..157795TCONS_00049689-exon-scaffold_165-1491911889:157640..157795Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1510915933:157640..157795TCONS_00049689-exon-scaffold_165-1510915933:157640..157795Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1575043694:157640..157795TCONS_00049689-exon-scaffold_165-1575043694:157640..157795Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1491911889:158071..158181TCONS_00049689-exon-scaffold_165-1491911889:158071..158181Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1510915933:158071..158181TCONS_00049689-exon-scaffold_165-1510915933:158071..158181Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1575043694:158071..158181TCONS_00049689-exon-scaffold_165-1575043694:158071..158181Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1491911889:159535..159619TCONS_00049689-exon-scaffold_165-1491911889:159535..159619Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1510915933:159535..159619TCONS_00049689-exon-scaffold_165-1510915933:159535..159619Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1575043694:159535..159619TCONS_00049689-exon-scaffold_165-1575043694:159535..159619Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1491911889:160796..161827TCONS_00049689-exon-scaffold_165-1491911889:160796..161827Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1510915933:160796..161827TCONS_00049689-exon-scaffold_165-1510915933:160796..161827Clytia hemisphaericaexon
TCONS_00049689-exon-scaffold_165-1575043694:160796..161827TCONS_00049689-exon-scaffold_165-1575043694:160796..161827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:155669..161827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0801361	0.168552	0.145775	0.0792921	0.340932	0.102674	0.117924	0.313211	0.146707	0.198914	0.43546	0.313513	0.188142	0.0528215	0.0692951	0.126645	0.0398876	0.246	0.26411	0.351729	0.0693435	0.109833	0.210777	0.0762045	0	0	0.404542	0.208739	0	0
Blast
[Close]
BLAST of TCONS_00049689 vs. Swiss-Prot (Human)
Match: WDR90 (WD repeat-containing protein 90 OS=Homo sapiens GN=WDR90 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.720e-45
Identity = 96/259 (37.07%), Postives = 149/259 (57.53%), Query Frame = 2 
Query:  317 RYEEQPSQCLAGYQDGTVRMFDFGQMKMLLKTKPHSCRVTSIAASFDGRVGISGSDDGLLVISSLTTGMTVRVFNDHRGGALCRIXXXXXXXXXXXXXXX----XXXXDCRISVWRSDWSKDICELNDWITFVRPSYSSDQGADNEAIPCLAVFSPSNSDLLVYTGYTVQKEISFYSMIKRKVVKTVSISNWILALDISPCGNLLAAGTKDRLVKLIDCESGTFQDFVGHYEAVQHAKFVKSGKALVSSAHSELLKWDV 1081
            R E+Q  +  AGY DG++R+F   +  M LK  PH   +T++A S DG+  +SG  DGL+ +S   TG T RV +DH+G  +  I     +             A+S D R+SVW SDW ++ CEL DW++F  P+ +  QG      P LA F P +  LL+Y G  V KE+  Y++ +++VV+ + +  + ++L +SP  +LLA G  + +++L+DC  GT QDF GH  AV   +F  S + L ++A +E+L W+V
Sbjct: 1492 RPEQQ--RLAAGYGDGSLRIFSVSRTAMELKMHPHPVALTTVAFSTDGQTVLSGDKDGLVAVSHPCTGTTFRVLSDHQGAPISTICVTCKECEDLGVEGTDLWLAASGDQRVSVWASDWLRNHCELVDWLSFPMPATTETQG---HLPPSLAAFCPWDGALLMYVGPGVYKEVIIYNLCQKQVVEKIPLPFFAMSLSLSPGTHLLAVGFAECMLRLVDCAMGTAQDFAGHDNAVHLCRFTPSARLLFTAARNEILVWEV 1745
The following BLAST results are available for this feature:
BLAST of TCONS_00049689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR901.720e-4537.07WD repeat-containing protein 90 OS=Homo sapiens GN... [more]
back to top