TCONS_00049721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049721
Unique NameTCONS_00049721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049721 ID=TCONS_00049721|Name=TCONS_00049721|organism=Clytia hemisphaerica|type=transcript|length=455bp
CCCTGTCTCCCGTTTCTTGATTGACTGCAGACCTTTCCCAGATTAAAGAG
AGACGGCAGTCCATAAACAAAATCTCCATACTTTTACCAAGATATCCaag
catttcaaatcaaattcaTATCAATCACTTACATATTTTTCATCAAACCA
GATTTTATCTAgatacaaaaatatttacatatgaaataaaaatttaaccG
TTGAAATAATAAAATGTACTAATCAATCGTACAAAGTAGCTTTGTTAAGA
AGAAAGTAGGTCATTTTGTGAAGATTCTGAGTGAGATTTTTGTGATacat
taagggaagaaattttggtgggaagaaaatttggcagatttggtcaaaat
ccgccaaatcaagTTCCCACCAAATCTAATTTTttccgtcatccgccaaa
ttaaattcccgccaaatttaagttgctctatctatcccccccccccaaat
gtgtg
Run BLAST on NCBI

transcript from alignment at scaffold_165:161940..162394

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049721 ID=TCONS_00049721|Name=TCONS_00049721|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_165:161940..162394 (Clytia hemisphaerica)
cacacatttgggggggggggatagatagagcaacttaaatttggcgggaa
tttaatttggcggatgacggaaAAAATTAGATTTGGTGGGAActtgattt
ggcggattttgaccaaatctgccaaattttcttcccaccaaaatttcttc
ccttaatgtATCACAAAAATCTCACTCAGAATCTTCACAAAATGACCTAC
TTTCTTCTTAACAAAGCTACTTTGTACGATTGATTAGTACATTTTATTAT
TTCAACggttaaatttttatttcatatgtaaatatttttgtatcTAGATA
AAATCTGGTTTGATGAAAAATATGTAAGTGATTGATAtgaatttgatttg
aaatgcttGGATATCTTGGTAAAAGTATGGAGATTTTGTTTATGGACTGC
CGTCTCTCTTTAATCTGGGAAAGGTCTGCAGTCAATCAAGAAACGGGAGA
CAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031526XLOC_031526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049721-exon-scaffold_165-1491911889:161940..162394TCONS_00049721-exon-scaffold_165-1491911889:161940..162394Clytia hemisphaericaexon
TCONS_00049721-exon-scaffold_165-1510915933:161940..162394TCONS_00049721-exon-scaffold_165-1510915933:161940..162394Clytia hemisphaericaexon
TCONS_00049721-exon-scaffold_165-1575043694:161940..162394TCONS_00049721-exon-scaffold_165-1575043694:161940..162394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:161940..162394 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.562543	0.687236	0.180128	2.33384	1.08032	1.48332	2.43017	1.09377	0.903208	2.48391	0.194748	0.888785	0.498044	0.417069	0.4865	0.216529	0.562243	0.165609	0	1.98996	1.67121	1.84635	1.3733	0.650936	1.79649	1.18651	2.20437	1.79969	1.86513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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