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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049722 ID=TCONS_00049722|Name=TCONS_00049722|organism=Clytia hemisphaerica|type=transcript|length=2146bp
ctttaAGATTGATGCATTTACAGAAATTATACTATACTAAAGAAAGACAT
TCAAATTGTAATGTAAAAGAATCGTTGTGCTATTGAAGCGCCGAAATTAT
ATAATTAGTTTTTGGCTCCCGGCGCGGCGGCGGCGCAGCAGatattttca
tgctaaatttctGTTCAGTCGGGTCGAACAAAATTCTTTGACAACCAAAG
ATAGAGCCATTGAACCCGGCTGTTGTGGGCACATCGAAGAGCAACTATTA
AACATCTCCGATGGTATGTTGGTCACAGatctataaagcccgaagggcta
gataggcaactttaagctttctagCCAAAAAAAAACGAAGCAAAAATTTG
GACTCTcgaaatttcgtgccgatggacttatgtgccgatggataggatgt
AGCATTTTAGTTGTTTTCGGCGaacgcgagatcaaaaaaagtaggcggca
aacgctattttgcatatctctcaaaccagtgaaattgcttgttgtcacgt
gatttctttggtaggaaatcctaccaaaatttACTTCACTTTTCGAACAA
GGCCGCTGATCTAGATATTGGTCCACTCCTTTATAGCTTTAGCGCGGGTG
gtcgccaatacgccatcgggaTATCAGATAACCCAAGGTTCTTTGTGCGT
GAAACTATAACTGTTGTCCTCGGTCGCTTTAGACTCCCTGCAGTGGCAAT
AATTACTTCTAATATAATAATAAATTCCAAATAATGCCAATACAATAGTG
TTGCTGCATAGTGAATCCATGTGTTTAACTCAAGAAAGAAAGTTACCCTC
AACTTTACTGACTTCCAACATTGTTTTGGACCATCCTCCATATCTGGTCA
CAGCCAACTCTTTAGTTTCAAAATTCAGATCATGGTATTCAATCATTTTG
TACTGAGGATGTTCATAGGTAAACACTAGCTTTGCAGAGTCCAAGTCATA
AAAAGCAACTACATTACCGTTGTCCATAAGCCAGTATTTCAAAGATAAAA
TTTGCTGTTTTTTCCCCTGTAATATTTGAAATGGATTATACGGAATATGA
TCGGATTCCTTCATCGAGAGTGGGAATTTCTTCAACCTGATCATCCCATC
GACAGTGGCATCAAAGATCTCGACTTCAAGTGTGTGAAGCCAAACCACAA
GAAATTGTGAACCGTTGCATTGTGCTATATATTGAAAATAATGAGGGTGT
TCTTTTTCCTGTTTTATAATCGGAaacataaatattttatttccttcaaa
attgaaaCCGCTCATCCAACCAGAATTTGTGTAGTCTCCATAGCAATTGG
ATTCTCCGTTCACTGGTTTATTGAATCTCTTTTCTTGACCGATAATGTAG
AAATGCCCagcatcaaaatttaagaacacaTTTTGCTTGACATTCCTACC
TTTAAATCGCTCATACAAAGCGTGATCTTTAATTGTTATTGTCTTAAAAT
GAGATATTCCTTTCTCATCAAAACTAAACAAATACAGATAATGGGTCCCG
CTGTCCTGATCTCGCAACAAGATGATGAAGAAATTACCATGTTCCTCAGT
CTTAAAAATCCACCGATCAAGATAATTATAAACCGAACCCCATTTATACC
CAATGGATAATTGAACAATTTTGTCTTTACTCACATCTTTAGATTTTAAT
TCCGTTGATGTCCCAAAGTATTCTTTAAAAATGTCACTGCGTATTTCCAA
TGTGTCATCTTCATCCAACCATAACCTTGGTTGAGTAATTCTATAATCGA
ACCAACGGGTTGTTTTAAAATCATAGCAAACTCGGCAACTTGCTTTAAAC
TTGATCAAACTGGCTTCCAATTTATGTGTTTCCTCGTTGTAGCTATAAAC
TGAAATTTTATGATCAGAAAACAAACTGTGACAGAAACTGGTGTAATACT
TCCCGGAGTCATCAAATCCTTGATAAGATTCGTCAAATGGTTCttccatt
tttttcttcctCCAAGGTATTCTACTTTGCTTTCCCCAAGTATTTATATC
TTCAGTACATCTTTCCACTGAAGAAGGCAGAAAAGATTGCCGTCCAGTAC
CAGGCCTCGAGTTCATAATGTCAATGATGCTAAGACGTTACAgttaaact
tttaaaatcgtTACAACTGTAGATTCAACGcagtgttttctttttc Run BLAST on NCBI protein sequence of TCONS_00049722-protein >TCONS_00049722-protein ID=TCONS_00049722-protein|Name=TCONS_00049722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MNSRPGTGRQSFLPSSVERCTEDINTWGKQSRIPWRKKKMEEPFDESYQG
FDDSGKYYTSFCHSLFSDHKISVYSYNEETHKLEASLIKFKASCRVCYDF
KTTRWFDYRITQPRLWLDEDDTLEIRSDIFKEYFGTSTELKSKDVSKDKI
VQLSIGYKWGSVYNYLDRWIFKTEEHGNFFIILLRDQDSGTHYLYLFSFD
EKGISHFKTITIKDHALYERFKGRNVKQNVFLNFDAGHFYIIGQEKRFNK
PVNGESNCYGDYTNSGWMSGFNFEGNKIFMFPIIKQEKEHPHYFQYIAQC
NGSQFLVVWLHTLEVEIFDATVDGMIRLKKFPLSMKESDHIPYNPFQILQ
GKKQQILSLKYWLMDNGNVVAFYDLDSAKLVFTYEHPQYKMIEYHDLNFE
TKELAVTRYGGWSKTMLEVSKVEGNFLS Run BLAST on NCBI transcript from alignment at scaffold_165:163033..165178 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049722 ID=TCONS_00049722|Name=TCONS_00049722|organism=Clytia hemisphaerica|type=transcript|length=2146bp|location=Sequence derived from alignment at scaffold_165:163033..165178 (Clytia hemisphaerica)
gaaaaagaaaacactgCGTTGAATCTACAGTTGTAacgattttaaaagtt
taacTGTAACGTCTTAGCATCATTGACATTATGAACTCGAGGCCTGGTAC
TGGACGGCAATCTTTTCTGCCTTCTTCAGTGGAAAGATGTACTGAAGATA
TAAATACTTGGGGAAAGCAAAGTAGAATACCTTGGaggaagaaaaaaatg
gaaGAACCATTTGACGAATCTTATCAAGGATTTGATGACTCCGGGAAGTA
TTACACCAGTTTCTGTCACAGTTTGTTTTCTGATCATAAAATTTCAGTTT
ATAGCTACAACGAGGAAACACATAAATTGGAAGCCAGTTTGATCAAGTTT
AAAGCAAGTTGCCGAGTTTGCTATGATTTTAAAACAACCCGTTGGTTCGA
TTATAGAATTACTCAACCAAGGTTATGGTTGGATGAAGATGACACATTGG
AAATACGCAGTGACATTTTTAAAGAATACTTTGGGACATCAACGGAATTA
AAATCTAAAGATGTGAGTAAAGACAAAATTGTTCAATTATCCATTGGGTA
TAAATGGGGTTCGGTTTATAATTATCTTGATCGGTGGATTTTTAAGACTG
AGGAACATGGTAATTTCTTCATCATCTTGTTGCGAGATCAGGACAGCGGG
ACCCATTATCTGTATTTGTTTAGTTTTGATGAGAAAGGAATATCTCATTT
TAAGACAATAACAATTAAAGATCACGCTTTGTATGAGCGATTTAAAGGTA
GGAATGTCAAGCAAAAtgtgttcttaaattttgatgctGGGCATTTCTAC
ATTATCGGTCAAGAAAAGAGATTCAATAAACCAGTGAACGGAGAATCCAA
TTGCTATGGAGACTACACAAATTCTGGTTGGATGAGCGGtttcaattttg
aaggaaataaaatatttatgttTCCGATTATAAAACAGGAAAAAGAACAC
CCTCATTATTTTCAATATATAGCACAATGCAACGGTTCACAATTTCTTGT
GGTTTGGCTTCACACACTTGAAGTCGAGATCTTTGATGCCACTGTCGATG
GGATGATCAGGTTGAAGAAATTCCCACTCTCGATGAAGGAATCCGATCAT
ATTCCGTATAATCCATTTCAAATATTACAGGGGAAAAAACAGCAAATTTT
ATCTTTGAAATACTGGCTTATGGACAACGGTAATGTAGTTGCTTTTTATG
ACTTGGACTCTGCAAAGCTAGTGTTTACCTATGAACATCCTCAGTACAAA
ATGATTGAATACCATGATCTGAATTTTGAAACTAAAGAGTTGGCTGTGAC
CAGATATGGAGGATGGTCCAAAACAATGTTGGAAGTCAGTAAAGTTGAGG
GTAACTTTCTTTCTTGAGTTAAACACATGGATTCACTATGCAGCAACACT
ATTGTATTGGCATTATTTGGAATTTATTATTATATTAGAAGTAATTATTG
CCACTGCAGGGAGTCTAAAGCGACCGAGGACAACAGTTATAGTTTCACGC
ACAAAGAACCTTGGGTTATCTGATAtcccgatggcgtattggcgacCACC
CGCGCTAAAGCTATAAAGGAGTGGACCAATATCTAGATCAGCGGCCTTGT
TCGAAAAGTGAAGTaaattttggtaggatttcctaccaaagaaatcacgt
gacaacaagcaatttcactggtttgagagatatgcaaaatagcgtttgcc
gcctactttttttgatctcgcgttCGCCGAAAACAACTAAAATGCTacat
cctatccatcggcacataagtccatcggcacgaaatttcgAGAGTCCAAA
TTTTTGCTTCGTTTTTTTTTGGctagaaagcttaaagttgcctatctagc
ccttcgggctttatagatCTGTGACCAACATACCATCGGAGATGTTTAAT
AGTTGCTCTTCGATGTGCCCACAACAGCCGGGTTCAATGGCTCTATCTTT
GGTTGTCAAAGAATTTTGTTCGACCCGACTGAACagaaatttagcatgaa
aatatCTGCTGCGCCGCCGCCGCGCCGGGAGCCAAAAACTAATTATATAA
TTTCGGCGCTTCAATAGCACAACGATTCTTTTACATTACAATTTGAATGT
CTTTCTTTAGTATAGTATAATTTCTGTAAATGCATCAATCTtaaag Coding sequence (CDS) from alignment at scaffold_165:163033..165178 >TCONS_00049722 ID=TCONS_00049722|Name=TCONS_00049722|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_165:163033..165178 (Clytia hemisphaerica)
ATGAACTCGAGGCCTGGTACTGGACGGCAATCTTTTCTGCCTTCTTCAGT
GGAAAGATGTACTGAAGATATAAATACTTGGGGAAAGCAAAGTAGAATAC
CTTGGaggaagaaaaaaatggaaGAACCATTTGACGAATCTTATCAAGGA
TTTGATGACTCCGGGAAGTATTACACCAGTTTCTGTCACAGTTTGTTTTC
TGATCATAAAATTTCAGTTTATAGCTACAACGAGGAAACACATAAATTGG
AAGCCAGTTTGATCAAGTTTAAAGCAAGTTGCCGAGTTTGCTATGATTTT
AAAACAACCCGTTGGTTCGATTATAGAATTACTCAACCAAGGTTATGGTT
GGATGAAGATGACACATTGGAAATACGCAGTGACATTTTTAAAGAATACT
TTGGGACATCAACGGAATTAAAATCTAAAGATGTGAGTAAAGACAAAATT
GTTCAATTATCCATTGGGTATAAATGGGGTTCGGTTTATAATTATCTTGA
TCGGTGGATTTTTAAGACTGAGGAACATGGTAATTTCTTCATCATCTTGT
TGCGAGATCAGGACAGCGGGACCCATTATCTGTATTTGTTTAGTTTTGAT
GAGAAAGGAATATCTCATTTTAAGACAATAACAATTAAAGATCACGCTTT
GTATGAGCGATTTAAAGGTAGGAATGTCAAGCAAAAtgtgttcttaaatt
ttgatgctGGGCATTTCTACATTATCGGTCAAGAAAAGAGATTCAATAAA
CCAGTGAACGGAGAATCCAATTGCTATGGAGACTACACAAATTCTGGTTG
GATGAGCGGtttcaattttgaaggaaataaaatatttatgttTCCGATTA
TAAAACAGGAAAAAGAACACCCTCATTATTTTCAATATATAGCACAATGC
AACGGTTCACAATTTCTTGTGGTTTGGCTTCACACACTTGAAGTCGAGAT
CTTTGATGCCACTGTCGATGGGATGATCAGGTTGAAGAAATTCCCACTCT
CGATGAAGGAATCCGATCATATTCCGTATAATCCATTTCAAATATTACAG
GGGAAAAAACAGCAAATTTTATCTTTGAAATACTGGCTTATGGACAACGG
TAATGTAGTTGCTTTTTATGACTTGGACTCTGCAAAGCTAGTGTTTACCT
ATGAACATCCTCAGTACAAAATGATTGAATACCATGATCTGAATTTTGAA
ACTAAAGAGTTGGCTGTGACCAGATATGGAGGATGGTCCAAAACAATGTT
GGAAGTCAGTAAAGTTGAGGGTAACTTTCTTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049722-exon-scaffold_165-1491911889:163033..165178 | TCONS_00049722-exon-scaffold_165-1491911889:163033..165178 | Clytia hemisphaerica | exon |
| TCONS_00049722-exon-scaffold_165-1510915933:163033..165178 | TCONS_00049722-exon-scaffold_165-1510915933:163033..165178 | Clytia hemisphaerica | exon |
| TCONS_00049722-exon-scaffold_165-1575043694:163033..165178 | TCONS_00049722-exon-scaffold_165-1575043694:163033..165178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:163033..165178 . |
Blast
The following BLAST results are available for this feature:
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