TCONS_00049703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049703
Unique NameTCONS_00049703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049703 ID=TCONS_00049703|Name=TCONS_00049703|organism=Clytia hemisphaerica|type=transcript|length=1113bp
CTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGTTG
TATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCTCC
AGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGA
CCAGTATGGCTGATCTGGAAAATTGCAGTTTTCACCAGCAGTcatttcaa
agtttaataagAAAGGGGTTATGAAAGCTGATTGCAGAAATGCTGATGAG
AGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGTTGCAGGTGCAAAGCAG
ATTCCGTTCATCTCAACTAAATTTCTTTAATGCTGTTATTACCATTATGA
AAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCTGTTTTGATAATCCCTC
CACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTAA
ACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACAA
GGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCTT
TTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCCA
GTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGAT
ACTTCAAGAAATATGGAGATGTTGGAGACATTTACATCCCCAGAGACCGG
AATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACG
AGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGGTCATTGATGGAC
GTGAAATTCGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATAT
GATCCAAGACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAG
AGATCGAGACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTC
GCAGAAGGTGAGCTTTTAATTCAGGGATACCCCTTCTATTCGATCATATT
TTAAGTGAAGCCCTctgaagcatttttaaaaaactaaagCTTCATACGTT
TGACAATCATTAATTATTGCTATTTgatgaatgtttgaaaaaccaCTTGA
CAGGAATTTTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_165:179583..185537-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049703 ID=TCONS_00049703|Name=TCONS_00049703|organism=Clytia hemisphaerica|type=transcript|length=5955bp|location=Sequence derived from alignment at scaffold_165:179583..185537- (Clytia hemisphaerica)
CTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGTTG
TATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCTCC
AGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGA
CCAGTATGGCTGATCTGGAAAAGTAAGTCTAAATTTGTCATTCAGTTAAA
ATTGATCATTTATCGTAATCCTCTTTACTTACCCTCTGGCTTTTTAGAAT
CAGAGACAGTGGTATAAAAAGAGTCTTTTCTGAGTAAGAATTTATCAATG
CTGTACTGTATGTATGTATATTGGAAATCTTGGCTGATTTGTTGTGTTGA
GTCAATTTTTCATCCTCAGATTAAAAACTTTGCTATTAGCGTAGACCTTT
TCGCCTTTCCATCCGCCATATTGAATTGTATGCAAAAATTATGGTAGCCA
AATTGCCGTGGTGAAATTCCCTTAGAAAGTATGCAAAACATATGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGATATCAAGGTGTTTGACGTTTTTGGGTGTGGGTGGGTGGG
TCAGCTTTTAAAACGTCAATTGACGTTCTTCTAACCTAGAATCGATTTGT
GACTGACCCCGCCCTAAGGAGGCGATTCTATCTTTGAAAAGGTGGTTTTT
TGTGGTTTGAAAATGGAATAACTTTGGAACTACTTAACCAATTTTAACAA
ATGACCCCTCATTTTCCTCACAAAGGTAAGGACTTTCAAATAAAATTAGT
TTGGTTTTCAAAATTTGAGGGGAAAATTTTGGCCTGACCACCCTATTTTA
GTTGTACGCCGAAGATCTTCGGCGTTAGTTACACGAAATCCATACTGGGT
AATGGGCCATTCCAGAAAATTTTTGTTACCCCCCATCGGACGACGTGCAT
TTTTAAATATTTTCTAGCCTCGGAAATAATTTTTTTTTTCAGTGGTGGTC
AGAAAGTTCGATAAAAATCCATGTACTTTTGCAAAATGCATTGGAATTCC
ACTCTTTTTGTCTGTTTTAATTGAATTGCCTTGGAAATTCATACATTTTC
TACTCTTGCCTTGGAAATTTTGAATTTTGGTGAAAACTTGTGCCCTCCGG
AAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGCCCC
AATCTTGTAGAAGAAAGATTAAATTTGCTTCTTTTTAAAACTAGAAATAA
TCAAATTCGCCCATCTCTTAGAACTAGCAGTAGCACTTCAAAAACCATAA
CATCACCCACGAAGGTACAAAAATAATCCTTATTCGGCTGACGGTAAATT
ATTCTCCTGGGAATAGAATCGCCAAACAATCAAATCAAAACATCGATCTG
AATGCGTGACGTCGAGTCATAATTACTGCTTTCAGTTTGCGTGTTTTGCG
TGTGTACTCCGTCTTCGTGGAATTTTTAATGGCATGAAAACAGAATATGC
TATGTCTTCAAGAACAAATTTCTAAAAGGCTTTTGTTGTTCGGTAAATAC
TTCTTTTTGGATTAAGAAATTCCATCTTTTATTGTTCTAATGATTATAAA
ATTTATTTATAAGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTTGC
ATATGTTTTGCATATTTTCCAACTAAATCCAACCACAGCTTTTTCGTTCC
TATATTTTTGCATACAATTCAAGATGGCAGATGGAAAGGCGAAAAGGTCT
ATAGTCGTTTGAAAGAACACGACGATCTTACTAATCACTCCAGAAGAATA
TTGGTAATTTCCAAAGCACTTTGAAAAATTGACTGGATTACAGAGTGTTT
TTTTTTACCTGAAAATTCCTGTTGTCCACCCCCTATATAAAATTTTTTTT
TGGCTTGAAATCTAAAATTAAAGTAAATCAGCCTGACTCTGAATCCAGTT
ATCTTGATTGATATAGGAGTTTTAGTCTATACTGTTTGTTATTCAATAGA
CTATTGTGTTCTCCCAAACCACAATTTCAAGGCCAGTAAATATCTCAAAA
CTATTGAAAATCTGTTCAAATTTTGATATTTTTTCATTTGATGTTATCAA
TAAAAATCTCATTGGTTGTAACTTGTATCCATTTTAGCAACAAGCCATTT
TAAGCTAATTTGGTTTGCAAAAAGTGCAAGTCTATAATTTAAACTAATAA
ACTGTCTGGAATCTGTGAGATCTTTGACTTGAGCAAAATAAATCTTCTCA
AAAATTTCAAAACTGCTTCTTTTTAGCAAGAAAAATAATCAGTAAAATTA
AATTTAAAAAAAGGCAAGCTTTACTTAATGTTTGTAAAGGTTCTTTGACA
AAAAACTTTCGAATTTTTTATCGGCATTGGGCCGATAAGCTTCAGACCCC
CTCCCCCTTGCTCTTATCAGCCAAAATTTTCGAAACCAATTTTTACATCT
TCGAAAACACAATTTTTTCCAATCATGTCCGCCATTGCGTTGGTCTTGCC
TTCCCACCTGTCTTCGTTGAGTTTTTATCTATTTGCACCAACATTAAGTT
TGTTCATACCCGCATTGATATTGTTAATCAAAACGAAAGTTAAAAAGACC
CGATGAAGTTGCAACATTTTGAAGGAAACGGCAGCACGCTGTCCAATTAA
AAAAAAGTTTTTTATCAAAGCTAATTCAAAACTGTATTTTTAAAGTTGCG
AATTTGTGCGCAAAGGTGAAAGCAAGTGAAATTGTATGCTTTCAGTTGAG
TTTGTGGACGAAATCAGAAAGAAATTGGTAGTTAGACCCCCCCCCACCCC
CTTATCAGCCCAATACCGATAAAAAATTTGAAAGTTTTTTTTGAGGATCC
TTAAAACGTTGACCCAAATTTTATTGCAGTGATACTTTTCTGGAAATAAA
GGAAATGCTACCAGTCATTTTTCAGGCAAAAGCCCAATTATGGACTGAAA
AATCAAATATTTATGTTTTTGATTTACTTTGCCACATTTTCATTAGAAAT
AGAAAATCTAGCTAATTTTTTATATTCCTTCTCTAGTTGCAGTTTTCACC
AGCAGTCATTTCAAAGTTTAATAAGAAAGGGGTTATGAAAGCTGATTGCA
GAAATGCTGATGAGAGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGTTG
CAGGTGCAAAGCAGATTCCGTTCATCTCAACTAAATTTCTTTAATGCTGT
TATTACCATTATGAAAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCTGT
TTTGATAATCCCTCCACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAG
ATTGATTGCAGTAAACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTG
AAAGCAGTTTACAAGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAA
ATCCAAGCCGCCTTTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATT
TCCAAACCAGTCCAGTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTT
TTACTACACTGGGTAAATACTGCTATCTTTAAACCTAACTGCAAAGGCTG
TCATTTTGGAATAATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGC
TGAAAACATTGGGCACTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGG
CTTGGGCCAATCGACTGTAGCTCGAATTAAACGAATCAAAACTATTTTGG
CTTTCCCCAGGCCTTGCCTATTTAATTGATACTTAAAAACTACTCCCTAA
AAGTTAAAACTAGACACTTGATATGTATTTTTGAGAAGATAGATTTTACT
GCTTTATTTATCATTAACATTGAGAAAATTTTATGATTGAACTTTTAGAT
ACTTCAAGAAATATGGAGATGTTGGAGACATTTACATCCCCAGAGACCGG
AATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACG
AGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGGTAGTTCATATGA
CCTTATTTTTGCTGTCCTATAAAAGTTTCTTTATTNTTGATAATCCCTCC
ACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTAAA
CTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACAAG
GTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCTTT
TGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCCAG
TTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGGTA
AATACTGCTATCTTTAAACCTAACTGCAAAGGCTGTCATTTGGGAATAAT
CGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGCTGAAAACATTGGACA
CTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGGCTTGGGCCAATCGAC
TGTAGCTCGAATTAAACGAATCAAAACTATTTTGGCTTTCCTCAGGCCTT
GCCTATTTAATTGATACTTAAAAACTACTCCCTAAAAGTTAAAATTAGAC
ACTTGATATGTATTTTTGAGAAGATAGATTTTACTGCTTTATTTATCATT
AACATTGAGAAAATTTTATGATTAAACTTTTAGATACTTCAAGAAATATG
GAGATGTTGGAGACATTTACATCCCCAGAGACCGGAATACACAGGAGTCA
CGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGATGC
AATGGATGGCATGGATGGAAAGGTAGTTCATATGACCTTATTTTTGCTGT
GCTATAAAAGTTTCTTTATTAATATTATCGTTAGCGGATGCATTTCCCTC
GATTTCTATAAAACCAATCAGTGGAGAAGTGCGACTCTTCTTGTAATGGT
TGATGTACATTTCTAACTTCTGCTTTAAGGTCATTGATGGACGTGAAATT
CGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATATGATCCAAG
ACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAGAGATCGAG
ACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTCGCAGAAGG
TGAGCTTTTAATTCAGGGATACCCCTTCTATTCGATCATATTTTAAGTGA
AGCCCTCTGAAGCATTTTTAAAAAACTAAAGCTTCATACGTTTGACAATC
ATTAATTATTGCTATTTGATGAATGTTTGAAAAACCACTTGACAGGAATT
TTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031517XLOC_031517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049703-exon-scaffold_165-1575043694:185366..185537TCONS_00049703-exon-scaffold_165-1575043694:185366..185537Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1575043694:181326..181801TCONS_00049703-exon-scaffold_165-1575043694:181326..181801Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1575043694:180953..180989TCONS_00049703-exon-scaffold_165-1575043694:180953..180989Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1575043694:180066..180167TCONS_00049703-exon-scaffold_165-1575043694:180066..180167Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1575043694:179583..179908TCONS_00049703-exon-scaffold_165-1575043694:179583..179908Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1510915933:185366..185537TCONS_00049703-exon-scaffold_165-1510915933:185366..185537Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1510915933:181326..181801TCONS_00049703-exon-scaffold_165-1510915933:181326..181801Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1510915933:180953..180989TCONS_00049703-exon-scaffold_165-1510915933:180953..180989Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1510915933:180066..180167TCONS_00049703-exon-scaffold_165-1510915933:180066..180167Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1510915933:179583..179908TCONS_00049703-exon-scaffold_165-1510915933:179583..179908Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1491911889:185366..185537TCONS_00049703-exon-scaffold_165-1491911889:185366..185537Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1491911889:181326..181801TCONS_00049703-exon-scaffold_165-1491911889:181326..181801Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1491911889:180953..180989TCONS_00049703-exon-scaffold_165-1491911889:180953..180989Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1491911889:180066..180167TCONS_00049703-exon-scaffold_165-1491911889:180066..180167Clytia hemisphaericaexon
TCONS_00049703-exon-scaffold_165-1491911889:179583..179908TCONS_00049703-exon-scaffold_165-1491911889:179583..179908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:179583..185537 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20099	1.12156	1.50215	1.73475	22.45	15.8567	15.1762	17.1732	8.93475	14.9659	10.2341	9.31155	22.1062	32.2956	23.3988	30.442	24.2701	23.6482	21.7323	12.5313	10.8285	11.6058	14.7338	15.7871	12.6501	12.69	9.66664	7.81409	9.71829	12.252
Blast
[Close]
BLAST of TCONS_00049703 vs. Swiss-Prot (Human)
Match: SRSF2 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 1.158e-26
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 2 
Query:  653 FKKYGDVGDIYIPRDRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPANQY 850
            F+KYG VGD+YIPRDR T+ESRGFAFVRF+++RDAEDAMD MDG V+DGRE+RV MARYGRP + +
Sbjct:   34 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 99
The following BLAST results are available for this feature:
BLAST of TCONS_00049703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF21.158e-2674.24Serine/arginine-rich splicing factor 2 OS=Homo sap... [more]
back to top