TCONS_00049690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049690
Unique NameTCONS_00049690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049690 ID=TCONS_00049690|Name=TCONS_00049690|organism=Clytia hemisphaerica|type=transcript|length=2654bp
atactttctaagggaatttcaccacggcaatttggctaccataatttttg
catacaattcaatatggcggatggaaaggcgaaaaggtctacgCTAATAG
CAAAGTTTTTAATCTGAGGATGAAAAATTGACTCAACACAACAAATCAGC
CAAGATTTCCAATATACATACATACAGTACAGCATTGATAAATTCTTACT
CAGAAAAGACTCTTTTTATACCACTGTCTCTGATTCTAAAAAGCCAGAGG
GTAAGTAAAGAGGATTACGATAAATGATCAATTTTAACTGAATGACAAAT
TTAGACTTACTTTTCCAGATCAGCCATACTGGTCCTGTATGTTAAATTGT
CAACTTTGAGACTGACCATTCCATTGATATCTGGAGGTCCCTTGGTCCCA
TCAAATTTACTCATTGTGGCTCTCAAGGAATACAACGATATGTGGAAAAT
TCAAGCTATTTTATTCCCTGCACTCCTGCCAGATTGAATCCGTGAAAAGA
TCTGCCAACAACTAAGAATGGCCAATGCGCGACGAAAATTCGAGACTGGG
ACTAGCgattgtctttgtttttctaGACTAGAACTTACTCACAGCTAGAC
TAGTTATTTCATAAGTTTATATGATTTCAAGATGGCAGACTTTCACGtgc
taaaaatttctttttggtcAACTTCAAGTGAAAATGAGATTGATTCTGTC
TCACCTCACTGTATTTTCTATAAAAAGCACGTTGGTGAAGGTCCAACACT
ATTCTTAATGAATATTCCTCCATACTGTGATAAGATCTGTTTAAAAAGCC
TTTTTAAAGATTGTGGCACCATCAAGTCCATCAATATTGTATCAACACCA
CGTCTGAAAAGCGAAAGTGAGGCGCCAATACCACTCTTGAAAATGATGGA
AACAGTTGAGAAGgacttCCAATATGCTTATGTGACATTCAACGAAGAAT
CCTCCGTCGATGTCGCATTGGACatgagaaaatcaaagattaTTCGAAAC
ATAAAAGTTGACGACTCTCTTGTGGGCTTGAATCGTTGGATAAAAGATTA
TGGTGAGCTTTACCCCGAAGAATCGTCTGTCCAATCCATTGTTAATGAAT
ACATGGTGCAATATGATCTCAACAAAGCTAAGGAAGAAGAAGCGCGTAAA
GAGGAAGGTCAACCGGATGATGAGGGCTGGGTTACCGTTCCTGTCAAAAA
GAAGCCTAATCAGGATGCTCAAAATGCAAAGAAGAAACTCAATAAAAAAC
TGGAAAAGAAGAAGCGCTCTGAAAAGGAGTTGATGTcgttttatttattt
caacaaCGAGAGGAAAAACGAGAAAAAGTTGCAGCTTTACGCTTGAAATT
TGAAGATGACAAGAAGCGAATCACTCAATTACGTCAACAACGAAAGTTTA
AACCGTTTTGAGAAAATTCCGAGAGAGAATTTTTACACCTGAAAAATGGT
TTCCAGGACACCCACCAAGTCAAGAAAGGAGGTCAAATTTGGGGGATCGA
GATTAATTCACCGTTAAAAATCTACAATTATTGGTGGTTGGTTGATCATT
GACCTGTCGATTTCACGACTGTTGAAAGAAGAACGATACATAGAAGACGA
ATCTATTTGAAGATTATCGAAAAGgaaaaaaacttcgaaaataCGCCTGG
ATCCTACCGTCTACACAAGTTCACTTAAAAGGGAATAATTTGAGAGGGGT
TGAAAACGGAAGTTAGCGTGGGGTGGAGTAAACAGTTACGGAGTTGTTTA
CAGTAGCTCTTTTACTATCCCTCTAACGGACGTTAGCATCGTTTAACTTT
GAATTTAATCGATGAAGAATATTTATTCCATTACACGACCGACAGGTGCT
TGACGATCCTATCTTCTGTTAGTGGGATATTATATGCGGGATAAGATATA
TATGCGCATAGTTAACAGCAGTAATGAGCGGTTACGGAAAACAACGGTAA
TACTTATTCTTTAACAAATACAGCAAACACCTCCATCACTGTTTTCTCGG
GCTTACTccgtttttcaaatttatcccgccaCCTAAATTATTCCCTTTCG
TGACCTTCTGTAGACGATAGCGTTATCTAGAAAGATGCGTGGAAAGGTTA
TTTGTACTGTCACTTTTTATAACTTTTCGTTAACTGAGTATTTTATTACA
TCCAACAGAAGAATGATAatgtaaaaaatcttgaattattTTAattctta
gccaatgattctgctgctgcatttatccttaacgattaaaaacttttaat
tatctagagggtctgtaaaacattggtgaatgacaatttaataaaaatga
aaaacattgttttcattagtaaagatgtaagaaatttcttctgtaagatt
ataaatagcactttttcattttaaataccGCACACCTCGGGGTgtctcac
tttctaactgatattttcagatagcgagtcggtatgtctgattatggaaa
agatttcaagtcaattgaaacaatatttgtcaaaatattacaTCCGAGTT
TTTAAAGAggaatcatgaaagcttctcaaattcactacacacacgctgat
aaaattatatttcatttacaaggaagcttttggggtatcttctgcaaata
tattttttcgatgacGTTATAATTTTTTGCCATATTTCAATTATTATCGA
caat
Run BLAST on NCBI

protein sequence of TCONS_00049690-protein

>TCONS_00049690-protein ID=TCONS_00049690-protein|Name=TCONS_00049690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MADFHVLKISFWSTSSENEIDSVSPHCIFYKKHVGEGPTLFLMNIPPYCD
KICLKSLFKDCGTIKSINIVSTPRLKSESEAPIPLLKMMETVEKDFQYAY
VTFNEESSVDVALDMRKSKIIRNIKVDDSLVGLNRWIKDYGELYPEESSV
QSIVNEYMVQYDLNKAKEEEARKEEGQPDDEGWVTVPVKKKPNQDAQNAK
KKLNKKLEKKKRSEKELMSFYLFQQREEKREKVAALRLKFEDDKKRITQL
RQQRKFKPF
Run BLAST on NCBI

transcript from alignment at scaffold_165:185056..192929+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049690 ID=TCONS_00049690|Name=TCONS_00049690|organism=Clytia hemisphaerica|type=transcript|length=7874bp|location=Sequence derived from alignment at scaffold_165:185056..192929+ (Clytia hemisphaerica)
atactttctaagggaatttcaccacggcaatttggctaccataatttttg
catacaattcaatatggcggatggaaaggcgaaaaggtctacgCTAATAG
CAAAGTTTTTAATCTGAGGATGAAAAATTGACTCAACACAACAAATCAGC
CAAGATTTCCAATATACATACATACAGTACAGCATTGATAAATTCTTACT
CAGAAAAGACTCTTTTTATACCACTGTCTCTGATTCTAAAAAGCCAGAGG
GTAAGTAAAGAGGATTACGATAAATGATCAATTTTAACTGAATGACAAAT
TTAGACTTACTTTTCCAGATCAGCCATACTGGTCCTGTATGTTAAATTGT
CAACTTTGAGACTGACCATTCCATTGATATCTGGAGGTCCCTTGGTCCCA
TCAAATTTACTCATTGTGGCTCTCAAGGAATACAACGATATGTGGAAAAT
TCAAGCTATTTTATTCCCTGCACTCCTGCCAGATTGAATCCGTGAAAAGA
TCTGCCAACAACTAAGAATGGCCAATGCGCGACGAAAATTCGAGACTGGG
ACTAGCgattgtctttgtttttctaGACTAGAACTTACTCACAGCTAGAC
TAGTTATTTCATAAGTTTATATGATTTCAAGATGGCAGACTTTCACGtgc
taaaaatttctttttggtcAACTTCAAGTGAAAATGAGATTGATTCTGTC
TCACCTCACTGTATTTTCTATAAAAAGCACGTTGGTGAAGGTCCAACACT
ATTCTTAATGAATATTCCTCCATACTGTGATAAGGTAAGTTTTTTattaa
taactttttttaaattgtcagcTTGGGTGTGGGAAAAACCAGCTAAAACC
TGAAAAACTGTGTGTGTTGTTTATAGCTCCAATATAAAAGTATGACTGTt
gtttttgttgactttttgtTCCAGATCTGTTTAAAAAGCCTTTTTAAAGA
TTGTGGCACCATCAAGTCCATCAATATTGTATCAACACCACGTCTGAAAA
GCGAAAGTGAGGCGCCAATACCACTCTTGAAAATGATGGAAACAGTTGAG
AAGGTACACTCGTTATTCAAGTTAACAATTTTTCCAGTCTTGTCCATCCA
AAATGACTGATAGTCAGGGACATTTGGCAAGTTCCTGTATGAGActgcaa
tcaaaaaaattataacatcACTAAATAAGAaatgacgttcgtgtcttttc
tcacttttttagcctagacaatgtagcaaacataaaatataagcacactg
cgcttttgattggctgaaatttttttttgcgttggaaaaactttttcaaa
ctttcagcgatgattgaccaaactgttacaactTAAATTATCCAGTGCAT
TTTTATCTACAAATattaccgtgagaggtcctaaagctgacagcccagcc
taaagccgatgggtctttcaaagatacaaactaaaataaaaacaaacctt
tagctgtgacgcaacgaagataccaaagtgtcaactaaactgagagattt
gatacattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtat
attacatgataagaatacaaatagacgacgtatattacaattattatgta
ttacatgacaccttgctcctattctagtaaagataatatatgtcgtcaaa
gattacacttaaatgaagagctgtccgattgcgggccttccgtaaataaa
catccggacttataggtggtaaagagtgcgttgatagttgccgcctcatt
gattcgatgtttgttattcaaattagtgctaccgcatccgcccttttttc
aacttcgcgccatttttacaatttagtctgtttgNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagtctgtttgtt
tcttgatggaaaccagtccaagttgtttcgtatttttcccgcacaagtca
cttttattacaaaactgttatcattttaaacatgagcaactgatccagaa
taaaaggtaattattttacaactcgcactttttaattacattaattgaca
tcttgacattacagctatcttgttagatgttttgttttgaaagttctagc
aatagtttatcgttcaacttggagagggaatgtttgtaaacatagaattt
tttttcataacagttatttggggggtcggaattaggctgggctgtcggct
ttaggacctctcacggtaccttctttattttcaatgaagcactcaaagtt
tactgaaggtgagcacataagatattcttataattaatgatattcattga
aacacgcttggttgtgcgctgcggtggagtgcatgacgtaacacgcgcgg
caactaactcgtcTTAGGACTCctctcgccttctgttggaagaccATATT
GggtgttttggcgttaccaccttCGAAGCAGCGGGCGCCTTTGTCTTCCC
GCAACTATTTCCGCCATTATTTTAAATGCCCTTAACAATATTTCTAAAAG
GGCttcataatcttggaagataatttgttttggtctccggctttgggaat
aGCAAATTCTTTTGgttgttttcaatgaaaaatggtaagaaacttaagtt
tacaagtgtcatttagtttttgctggcttatagaatggcaggatcctgga
tggtttacCTAACTGACTGGTAATTCCGTAACTAGCactgtttattattt
ttttaggacttCCAATATGCTTATGTGACATTCAACGAAGAATCCTCCGT
CGATGTCGCATTGGACatgagaaaatcaaagattaTTCGAAACATAAAAG
TTGACGACTCTCTTGTGGGCTTGAATCGTTAGTTTATCTGATATTTTCTT
CCATTTGAAGTCACGTTGTAATGTGATCTGAAAAGTGCTGTGCTTTTAGT
GTGGTGTGGTTTGAGTGCTTGAGCAGTTGAATCAAGGCATCATTTTCGTG
ACACTTTGCTAGATATTTTCAACAGACAAGGGAGAGGTTTCACAGTTGTA
TTTTTTAGTTCACCAGTTCTATCTTTCTGTTAATTCTTCCTCCAATTTTC
ATCACataggctaatttttttctttcaaactaAAGCGACCAAATTTTCCG
TCCCTGTTTAATccgttcaatttttcattgaatacacctttttcTGGTTA
GCcgtttcgtataaaaagtcaccatAGTTCTGAGTAAACAAACCATTTAG
CCATTGGCTGAAAGCAAATttaacataaacaaaaaaatctgcaGAGTATG
agaaaaatgtgttttctgtGCTCTTACTGTGGACATTTTTTGTtcatgtt
tttgcttttagccaatgagATGGTTTGTTTACTCAAAATTTTAGTGACTT
TTTATAGTAGCTAACCGTAAATAGGTGTATTCCGCCAGTCCATTCTTAAA
AGGGCACTCCAAGCAGACTATAGGACTATAAGATAGGAGGAGTTTAAAAA
GGAAAGAACTTTCAGAGAAAAGTCGAACGTGCAacatttttgttcttttc
tgCAGGTTGGATAAAAGATTATGGTGAGCTTTACCCCGAAGAATCGTCTG
TCCAATCCATTGTTAATGAATACATGGTGCAATATGATCTCAACAAAGCT
AAGGTAAGCATAGTGtggaaaggggtctgacccccccttcttaaatgatc
cctTCCTTCTTGAcatccccccaacctttaaaaatgcctatcccccaagg
ttTCGGGCTGAATTTTTAATGGTAAAAAGAGGAGGGAAACAGTAAAGAAA
AATTAAGTCCGGCAAATATAATACCACTTTTTAGTGAAAATAAAGAAGCT
TCCTTTCATGCAGGCCAAATTTCATAACAGTGCTGGAAAATAATCTACAA
TATATGTAAGCCCCCCCCCTTCTTAAACGACCCCCCCCCTCCTTGCCATC
CCCCCTTTTTATTAGTGAAAATTTCTGATCCCCCCTTCTTCACTTTTTTG
GAAGGTGTCACCCCACCCCCCCCCTTAAGAAGGGGGGGTTCGAACTATGT
TAAGTCCCAACAACAATTCCCGTCTGAGTTCAAGAAAGCCCTTTTGAATA
AGAGGCTGAGgagtcactgacctttatatacgcTGTACACAGTTTCTCAG
AGTTTTTGTGATATCCTAATGGTACCACTACTACTCAATGttggtgaaaa
aaaaattaaacaggaaatttcattgaattaCACATTGACCCACACCGAGT
AGTTCTACTATTAGGGCCACACCAAGTAGTTCTACTAATTAGGGTACCAc
taaaaactccgatcaaagatgcaAATAGCTTGGTCTAGGCTATATGAATA
TGGATCCTTTACAAAGCTTCATGAAATCTTTCTCGAATTCAAATCCAACC
AGAAAATCAGTGAAGAATGACAAAGCTACGCTGAGGGTCTCACAATCCAC
AGTGCAAATAGAATTGCGACCTGATAGCCCCTCAGtatagatacacgttt
ttttttttaagaaacacacttttaagaaacatgaggctcagaatgcctaa
aaactaagaaacatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaacatgtaagaaacatttaaggctcaaaaggcc
gatttcttaagaaacattgaggctgcttggtaaaactagtttcttaaaaa
aaaaaaaacgtgtagcaggTAGTATAGTCTATTCTGGGAAACCCTACACG
GATTGTGAGCAGGGACTTATATTTGCTGCGTACTTTGATTGTTGTAGGAA
GAAGAAGCGCGTAAAGAGGAAGGTCAACCGGATGATGAGGGCTGGGTTAC
CGTTCCTGTCAAAAAGAAGCCTAATCAGGATGCTCAAAATGCAAAGAAGA
AACTCAATAAAAAACTGGAAAAGAAGAAGCGCTCTGAAAAGGTAGATTTT
AGGGACatgtttttaaattcttttgtttttagtaCTCTAGggaaatcatt
attttttaataGTACAGAATGGTATAGAGAACTAATAAACAATTTATCTC
ATCTTTCGTACcaatttttaaccaaaatttatttcatggTGTGTCGAAAT
TCCTAATGATCCCCTTCTGAAGATTTGGTCTCTGATCCCTCTTTTCATCC
AGTAATGATTTACCACAGGATTGCAACGTCCATATCTATCTTTTTTTTAC
TGCCGCCCTAATAAAATCTATATATTTTTCTATCTTATTCTTTTCAAATG
TTTCAGGAGTTGATGTcgttttatttatttcaacaaCGAGAGGAAAAACG
AGAAAGTAAGTCATATTTTAACAAGCTTCTTTCAAAAGACTAGTAACCTT
ATGGACTTTGAAAGCGGATATATATTATTAGAAATGTTCATAGGTTCACA
GTAATCCTCATTTCGTGCAAAGAGTACTCGGCCACTTGTTGAGGAGTAGG
AACAGACTCTGCTCATAATCTGATGATACATAacatgttttttatgtttt
ttcacTTTCCCATTTCCCCATTCACTTTCGAAATTTTATAACTTGTATAT
TTAATATTCCAATCTccaaaacctattcaatcatctATGGAATTGAATAT
TtattgattgaacagagaattTTAATCTTATTTCGATTATTGTAAGATGA
TGAGTTTTGAGGAATTTactttgaggattttacttttgggacacactgta
tgcTTCCTTTCCTCATGAAGGTACAAAGAGAAACAGGAGACGTATGTTAT
tataaccaagctcgccctacgatgaAAAAAGTTACCAGGTTTGCATGATA
ATAAactaaaaaaggcctgtaaacttggcaatccttcatcaaatgacaaa
atttttctATTAATGTTTTCTTCAATGTGAACTCGATTGCTTGATATtct
cctccaaaattctccagcgactttttgtctaaaaattgatTCTGAAATTG
CCTGTgcttttgaataattttccattttctagcttaataaaatatatttt
tgaaacgAAGTTTaacggataacgaaatggaacataaacttgttttgcgg
ggctaacttttatttaattctcgtatattagaaggctgaTATCTTCAATA
TTGATagttagaatgttcagagcaaacttgagttctactaaagtgtattt
catcgggcgagcttagaatttcttttgataatttagtaaaagaaatcaaa
agactttaacgaccaattaccgacaaattaaactcctgtttttcttttat
acCTCCGTGCTTTCCTGAcagttcttatttttttcaacattGTAGAAGTT
GCAGCTTTACGCTTGAAATTTGAAGATGACAAGAAGCGAATCACTCAATT
ACGTCAACAACGAAAGTTTAAACCGTTTTGAGAAAATTCCGAGAGAGAAT
TTTTACACCTGAAAAATGGTTTCCAGGACACCCACCAAGTCAAGAAAGGA
GGTCAAATTTGGGGGATCGAGATTAATTCACCGTTAAAAATCTACAATTA
TTGGTGGTTGGTTGATCATTGACCTGTCGATTTCACGACTGTTGAAAGAA
GAACGATACATAGAAGACGAATCTATTTGAAGATTATCGAAAAGgaaaaa
aacttcgaaaataCGCCTGGATCCTACCGTCTACACAAGTTCACTTAAAA
GGGAATAATTTGAGAGGGGTTGAAAACGGAAGTTAGCGTGGGGTGGAGTA
AACAGTTACGGAGTTGTTTACAGTAGCTCTTTTACTATCCCTCTAACGGA
CGTTAGCATCGTTTAACTTTGAATTTAATCGATGAAGAATATTTATTCCA
TTACACGACCGACAGGTGCTTGACGATCCTATCTTCTGTTAGTGGGATAT
TATATGCGGGATAAGATATATATGCGCATAGTTAACAGCAGTAATGAGCG
GTTACGGAAAACAACGGTAATACTTATTCTTTAACAAATACAGCAAACAC
CTCCATCACTGTTTTCTCGGGCTTACTccgtttttcaaatttatcccgcc
aCCTAAATTATTCCCTTTCGTGACCTTCTGTAGACGATAGCGTTATCTAG
AAAGATGCGTGGAAAGGTTATTTGTACTGTCACTTTTTATAACTTTTCGT
TAACTGAGTATTTTATTACATCCAACAGAAGAATGATAatgtaaaaaatc
ttgaattattTTAattcttagccaatgattctgctgctgcatttatcctt
aacgattaaaaacttttaattatctagagggtctgtaaaacattggtgaa
tgacaatttaataaaaatgaaaaacattgttttcattagtaaagatgtaa
gaaatttcttctgtaagattataaatagcactttttcattttaaataccG
CACACCTCGGGGTgtctcactttctaactgatattttcagatagcgagtc
ggtatgtctgattatggaaaagatttcaagtcaattgaaacaatatttgt
caaaatattacaTCCGAGTTTTTAAAGAggaatcatgaaagcttctcaaa
ttcactacacacacgctgataaaattatatttcatttacaaggaagcttt
tggggtatcttctgcaaatatattttttcgatgacGTTATAATTTTTTGC
CATATTTCAATTATTATCGAcaat

Coding sequence (CDS) from alignment at scaffold_165:185056..192929+

>TCONS_00049690 ID=TCONS_00049690|Name=TCONS_00049690|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_165:185056..192929+ (Clytia hemisphaerica)
ATGGCAGACTTTCACGtgctaaaaatttctttttggtcAACTTCAAGTGA
AAATGAGATTGATTCTGTCTCACCTCACTGTATTTTCTATAAAAAGCACG
TTGGTGAAGGTCCAACACTATTCTTAATGAATATTCCTCCATACTGTGAT
AAGATCTGTTTAAAAAGCCTTTTTAAAGATTGTGGCACCATCAAGTCCAT
CAATATTGTATCAACACCACGTCTGAAAAGCGAAAGTGAGGCGCCAATAC
CACTCTTGAAAATGATGGAAACAGTTGAGAAGgacttCCAATATGCTTAT
GTGACATTCAACGAAGAATCCTCCGTCGATGTCGCATTGGACatgagaaa
atcaaagattaTTCGAAACATAAAAGTTGACGACTCTCTTGTGGGCTTGA
ATCGTTGGATAAAAGATTATGGTGAGCTTTACCCCGAAGAATCGTCTGTC
CAATCCATTGTTAATGAATACATGGTGCAATATGATCTCAACAAAGCTAA
GGAAGAAGAAGCGCGTAAAGAGGAAGGTCAACCGGATGATGAGGGCTGGG
TTACCGTTCCTGTCAAAAAGAAGCCTAATCAGGATGCTCAAAATGCAAAG
AAGAAACTCAATAAAAAACTGGAAAAGAAGAAGCGCTCTGAAAAGGAGTT
GATGTcgttttatttatttcaacaaCGAGAGGAAAAACGAGAAAAAGTTG
CAGCTTTACGCTTGAAATTTGAAGATGACAAGAAGCGAATCACTCAATTA
CGTCAACAACGAAAGTTTAAACCGTTTTGAATGGCAGACTTTCACGtgct
aaaaatttctttttggtcAACTTCAAGTGAAAATGAGATTGATTCTGTCT
CACCTCACTGTATTTTCTATAAAAAGCACGTTGGTGAAGGTCCAACACTA
TTCTTAATGAATATTCCTCCATACTGTGATAAGATCTGTTTAAAAAGCCT
TTTTAAAGATTGTGGCACCATCAAGTCCATCAATATTGTATCAACACCAC
GTCTGAAAAGCGAAAGTGAGGCGCCAATACCACTCTTGAAAATGATGGAA
ACAGTTGAGAAGgacttCCAATATGCTTATGTGACATTCAACGAAGAATC
CTCCGTCGATGTCGCATTGGACatgagaaaatcaaagattaTTCGAAACA
TAAAAGTTGACGACTCTCTTGTGGGCTTGAATCGTTGGATAAAAGATTAT
GGTGAGCTTTACCCCGAAGAATCGTCTGTCCAATCCATTGTTAATGAATA
CATGGTGCAATATGATCTCAACAAAGCTAAGGAAGAAGAAGCGCGTAAAG
AGGAAGGTCAACCGGATGATGAGGGCTGGGTTACCGTTCCTGTCAAAAAG
AAGCCTAATCAGGATGCTCAAAATGCAAAGAAGAAACTCAATAAAAAACT
GGAAAAGAAGAAGCGCTCTGAAAAGGAGTTGATGTcgttttatttatttc
aacaaCGAGAGGAAAAACGAGAAAAAGTTGCAGCTTTACGCTTGAAATTT
GAAGATGACAAGAAGCGAATCACTCAATTACGTCAACAACGAAAGTTTAA
ACCGTTTTGAATGGCAGACTTTCACGtgctaaaaatttctttttggtcAA
CTTCAAGTGAAAATGAGATTGATTCTGTCTCACCTCACTGTATTTTCTAT
AAAAAGCACGTTGGTGAAGGTCCAACACTATTCTTAATGAATATTCCTCC
ATACTGTGATAAGATCTGTTTAAAAAGCCTTTTTAAAGATTGTGGCACCA
TCAAGTCCATCAATATTGTATCAACACCACGTCTGAAAAGCGAAAGTGAG
GCGCCAATACCACTCTTGAAAATGATGGAAACAGTTGAGAAGgacttCCA
ATATGCTTATGTGACATTCAACGAAGAATCCTCCGTCGATGTCGCATTGG
ACatgagaaaatcaaagattaTTCGAAACATAAAAGTTGACGACTCTCTT
GTGGGCTTGAATCGTTGGATAAAAGATTATGGTGAGCTTTACCCCGAAGA
ATCGTCTGTCCAATCCATTGTTAATGAATACATGGTGCAATATGATCTCA
ACAAAGCTAAGGAAGAAGAAGCGCGTAAAGAGGAAGGTCAACCGGATGAT
GAGGGCTGGGTTACCGTTCCTGTCAAAAAGAAGCCTAATCAGGATGCTCA
AAATGCAAAGAAGAAACTCAATAAAAAACTGGAAAAGAAGAAGCGCTCTG
AAAAGGAGTTGATGTcgttttatttatttcaacaaCGAGAGGAAAAACGA
GAAAAAGTTGCAGCTTTACGCTTGAAATTTGAAGATGACAAGAAGCGAAT
CACTCAATTACGTCAACAACGAAAGTTTAAACCGTTTTGAATGGCAGACT
TTCACGtgctaaaaatttctttttggtcAACTTCAAGTGAAAATGAGATT
GATTCTGTCTCACCTCACTGTATTTTCTATAAAAAGCACGTTGGTGAAGG
TCCAACACTATTCTTAATGAATATTCCTCCATACTGTGATAAGATCTGTT
TAAAAAGCCTTTTTAAAGATTGTGGCACCATCAAGTCCATCAATATTGTA
TCAACACCACGTCTGAAAAGCGAAAGTGAGGCGCCAATACCACTCTTGAA
AATGATGGAAACAGTTGAGAAGgacttCCAATATGCTTATGTGACATTCA
ACGAAGAATCCTCCGTCGATGTCGCATTGGACatgagaaaatcaaagatt
aTTCGAAACATAAAAGTTGACGACTCTCTTGTGGGCTTGAATCGTTGGAT
AAAAGATTATGGTGAGCTTTACCCCGAAGAATCGTCTGTCCAATCCATTG
TTAATGAATACATGGTGCAATATGATCTCAACAAAGCTAAGGAAGAAGAA
GCGCGTAAAGAGGAAGGTCAACCGGATGATGAGGGCTGGGTTACCGTTCC
TGTCAAAAAGAAGCCTAATCAGGATGCTCAAAATGCAAAGAAGAAACTCA
ATAAAAAACTGGAAAAGAAGAAGCGCTCTGAAAAGGAGTTGATGTcgttt
tatttatttcaacaaCGAGAGGAAAAACGAGAAAAAGTTGCAGCTTTACG
CTTGAAATTTGAAGATGACAAGAAGCGAATCACTCAATTACGTCAACAAC
GAAAGTTTAAACCGTTTTGAATGGCAGACTTTCACGtgctaaaaatttct
ttttggtcAACTTCAAGTGAAAATGAGATTGATTCTGTCTCACCTCACTG
TATTTTCTATAAAAAGCACGTTGGTGAAGGTCCAACACTATTCTTAATGA
ATATTCCTCCATACTGTGATAAGATCTGTTTAAAAAGCCTTTTTAAAGAT
TGTGGCACCATCAAGTCCATCAATATTGTATCAACACCACGTCTGAAAAG
CGAAAGTGAGGCGCCAATACCACTCTTGAAAATGATGGAAACAGTTGAGA
AGgacttCCAATATGCTTATGTGACATTCAACGAAGAATCCTCCGTCGAT
GTCGCATTGGACatgagaaaatcaaagattaTTCGAAACATAAAAGTTGA
CGACTCTCTTGTGGGCTTGAATCGTTGGATAAAAGATTATGGTGAGCTTT
ACCCCGAAGAATCGTCTGTCCAATCCATTGTTAATGAATACATGGTGCAA
TATGATCTCAACAAAGCTAAGGAAGAAGAAGCGCGTAAAGAGGAAGGTCA
ACCGGATGATGAGGGCTGGGTTACCGTTCCTGTCAAAAAGAAGCCTAATC
AGGATGCTCAAAATGCAAAGAAGAAACTCAATAAAAAACTGGAAAAGAAG
AAGCGCTCTGAAAAGGAGTTGATGTcgttttatttatttcaacaaCGAGA
GGAAAAACGAGAAAAAGTTGCAGCTTTACGCTTGAAATTTGAAGATGACA
AGAAGCGAATCACTCAATTACGTCAACAACGAAAGTTTAAACCGTTTTGA
ATGGCAGACTTTCACGtgctaaaaatttctttttggtcAACTTCAAGTGA
AAATGAGATTGATTCTGTCTCACCTCACTGTATTTTCTATAAAAAGCACG
TTGGTGAAGGTCCAACACTATTCTTAATGAATATTCCTCCATACTGTGAT
AAGATCTGTTTAAAAAGCCTTTTTAAAGATTGTGGCACCATCAAGTCCAT
CAATATTGTATCAACACCACGTCTGAAAAGCGAAAGTGAGGCGCCAATAC
CACTCTTGAAAATGATGGAAACAGTTGAGAAGgacttCCAATATGCTTAT
GTGACATTCAACGAAGAATCCTCCGTCGATGTCGCATTGGACatgagaaa
atcaaagattaTTCGAAACATAAAAGTTGACGACTCTCTTGTGGGCTTGA
ATCGTTGGATAAAAGATTATGGTGAGCTTTACCCCGAAGAATCGTCTGTC
CAATCCATTGTTAATGAATACATGGTGCAATATGATCTCAACAAAGCTAA
GGAAGAAGAAGCGCGTAAAGAGGAAGGTCAACCGGATGATGAGGGCTGGG
TTACCGTTCCTGTCAAAAAGAAGCCTAATCAGGATGCTCAAAATGCAAAG
AAGAAACTCAATAAAAAACTGGAAAAGAAGAAGCGCTCTGAAAAGGAGTT
GATGTcgttttatttatttcaacaaCGAGAGGAAAAACGAGAAAAAGTTG
CAGCTTTACGCTTGAAATTTGAAGATGACAAGAAGCGAATCACTCAATTA
CGTCAACAACGAAAGTTTAAACCGTTTTGAATGGCAGACTTTCACGtgct
aaaaatttctttttggtcAACTTCAAGTGAAAATGAGATTGATTCTGTCT
CACCTCACTGTATTTTCTATAAAAAGCACGTTGGTGAAGGTCCAACACTA
TTCTTAATGAATATTCCTCCATACTGTGATAAGATCTGTTTAAAAAGCCT
TTTTAAAGATTGTGGCACCATCAAGTCCATCAATATTGTATCAACACCAC
GTCTGAAAAGCGAAAGTGAGGCGCCAATACCACTCTTGAAAATGATGGAA
ACAGTTGAGAAGgacttCCAATATGCTTATGTGACATTCAACGAAGAATC
CTCCGTCGATGTCGCATTGGACatgagaaaatcaaagattaTTCGAAACA
TAAAAGTTGACGACTCTCTTGTGGGCTTGAATCGTTGGATAAAAGATTAT
GGTGAGCTTTACCCCGAAGAATCGTCTGTCCAATCCATTGTTAATGAATA
CATGGTGCAATATGATCTCAACAAAGCTAAGGAAGAAGAAGCGCGTAAAG
AGGAAGGTCAACCGGATGATGAGGGCTGGGTTACCGTTCCTGTCAAAAAG
AAGCCTAATCAGGATGCTCAAAATGCAAAGAAGAAACTCAATAAAAAACT
GGAAAAGAAGAAGCGCTCTGAAAAGGAGTTGATGTcgttttatttatttc
aacaaCGAGAGGAAAAACGAGAAAAAGTTGCAGCTTTACGCTTGAAATTT
GAAGATGACAAGAAGCGAATCACTCAATTACGTCAACAACGAAAGTTTAA
ACCGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031507XLOC_031507Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049690-proteinTCONS_00049690-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049690-exon-scaffold_165-1491911889:185056..185839TCONS_00049690-exon-scaffold_165-1491911889:185056..185839Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:185056..185839TCONS_00049690-exon-scaffold_165-1510915933:185056..185839Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:185056..185839TCONS_00049690-exon-scaffold_165-1575043694:185056..185839Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1491911889:185980..186108TCONS_00049690-exon-scaffold_165-1491911889:185980..186108Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:185980..186108TCONS_00049690-exon-scaffold_165-1510915933:185980..186108Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:185980..186108TCONS_00049690-exon-scaffold_165-1575043694:185980..186108Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1491911889:187862..187982TCONS_00049690-exon-scaffold_165-1491911889:187862..187982Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:187862..187982TCONS_00049690-exon-scaffold_165-1510915933:187862..187982Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:187862..187982TCONS_00049690-exon-scaffold_165-1575043694:187862..187982Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1491911889:188661..188758TCONS_00049690-exon-scaffold_165-1491911889:188661..188758Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:188661..188758TCONS_00049690-exon-scaffold_165-1510915933:188661..188758Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:188661..188758TCONS_00049690-exon-scaffold_165-1575043694:188661..188758Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1491911889:190103..190246TCONS_00049690-exon-scaffold_165-1491911889:190103..190246Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:190103..190246TCONS_00049690-exon-scaffold_165-1510915933:190103..190246Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:190103..190246TCONS_00049690-exon-scaffold_165-1575043694:190103..190246Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1491911889:190562..190610TCONS_00049690-exon-scaffold_165-1491911889:190562..190610Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:190562..190610TCONS_00049690-exon-scaffold_165-1510915933:190562..190610Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:190562..190610TCONS_00049690-exon-scaffold_165-1575043694:190562..190610Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1491911889:191601..192929TCONS_00049690-exon-scaffold_165-1491911889:191601..192929Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1510915933:191601..192929TCONS_00049690-exon-scaffold_165-1510915933:191601..192929Clytia hemisphaericaexon
TCONS_00049690-exon-scaffold_165-1575043694:191601..192929TCONS_00049690-exon-scaffold_165-1575043694:191601..192929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:185056..192929 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.0334	59.4921	49.5647	47.4518	47.2868	34.2576	29.6588	29.2621	21.1407	23.9289	18.1033	17.7557	20.4808	23.0391	22.1862	24.0674	22.3707	24.2894	6.89411	9.07234	23.9818	21.9545	58.7714	50.6946	23.8511	28.7823	11.8535	11.664	31.9239	35.1035
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR024326RRP7
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00049690 vs. Swiss-Prot (Human)
Match: RRP7A (Ribosomal RNA-processing protein 7 homolog A OS=Homo sapiens GN=RRP7A PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.367e-28
Identity = 85/232 (36.64%), Postives = 130/232 (56.03%), Query Frame = 2 
Query:  746 TLFLMNIPPYCDKICLKSLFKDCGTIKSINIVSTPRLKS---ESEA------PIPLLKMMETVEKDFQYAYVTFNEESSVDVALDMRKSKIIRNIKVDDSLVGLNRWIKDYGELYPEESSVQSIVNEYMVQYDLN-XXXXXXXXXXXGQPDDEGWVTVPVK-KKPNQDAQNAXXXXXXXXXXXXXXXXXXMSFYLFQQREEKREKVAALRLKFEDDKKRITQLRQQRKFKPF 1408
            TLF++N+PPYC +  L  L   CG ++S+ +   P L     ES +      P+P           FQ AYV F + S V  AL + K  ++ + +      G+++WI DY +  P+  +++  V+ +M  YD     +E +A++EEG PD+EGWV V  + ++P      A      + E++KRS KEL++FY +Q RE K E +A LR KFE+DK+RI  LR QRKF+P+
Sbjct:   60 TLFVLNVPPYCTEESLSRLLSTCGLVQSVELQEKPDLAESPKESRSKFFHPKPVP----------GFQVAYVVFQKPSGVSAALAL-KGPLLVSTESHPVKSGIHKWISDYADSVPDPEALRVEVDTFMEAYDQKIAEEEAKAKEEEGVPDEEGWVKVTRRGRRPVLPRTEAASLRVLERERRKRSRKELLNFYAWQHRESKMEHLAQLRKKFEEDKQRIELLRAQRKFRPY 280
The following BLAST results are available for this feature:
BLAST of TCONS_00049690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP7A1.367e-2836.64Ribosomal RNA-processing protein 7 homolog A OS=Ho... [more]
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