TCONS_00049709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049709
Unique NameTCONS_00049709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049709 ID=TCONS_00049709|Name=TCONS_00049709|organism=Clytia hemisphaerica|type=transcript|length=1254bp
caggTGAAAACAAATTAACAGAGTTAGCTCGTATGGTTGTTCTTGACGGG
CAAAATGAGCTCAGCCAAATCGATATTTGCTCTGAATGCTATATTCGCTC
TAACGACAGAATGAAGAATTGGTTTTCGATCCCATGTATACCAGAACACA
GAATCGTATATGCAAAACTTGGAACAGATCCACCTTGGCCGGCCAAGGTG
TTACGTGAAAACGAAGACGGTTCCAGCATTGACGTTCGATTCTTTGGAAA
TCCATATCAAAGAGCATGGATACCGAATCGAAAACAAAACATCTGGGATC
TCGACGAAAAACCACAACCGAAGAAACGTTCTAAAGCTCTCTCGCTTGCC
GAAGAAGAACTCAAAGTCTACTTACGTCTATTAGCCAGGAGCAAGTCCTC
TGCTAAGAGCGGTAAAGTAACATCCTCGGATTcatctgaagaagaagaaa
tcgaCGACTCAGACGACCAACAACCTGAAAAAGAAACTAAATCATCTTTC
ACCAAGGTCAAAACACCCGCCAAGAAAGCCGCAACACCCTCTTCTGCTTC
CAAATCTTCGTctcggggtcgaaaacgaacgCCCGCTGCCTCCAAGCCGC
AGACTGAATCTGACgaagacgaagaagaagaagaattggCGGACGAAAGC
AAaagcgaaagcgaaagtgaaagtgacaGCGATGGAGAATTCCAACCGCC
ACAGAAACgtaacaaaaagaaagacaCCAAACGAAAATCGCGCGACGACT
CGCAGTGTAAGAAACAACGTGGCCGAAAGCGAGGAAGTGGCGTGAAACGA
AAAACAACGTCGCCCGACGGAGCATCCTCCTCGTCTGCCAAAGAAACGAA
AGCCGAGCGACGTTTCCGCGAGAtgcaagaaaagaaaatgatggaatttc
aaaaaaacaaaggtAGCAAAAACTATAATAAAAACGAACAGAAAGTTGAT
ATTAATAAAAACATTGGTAGTGAAGACGGTGGTGATGATTCTTCTGAGAT
GCAGTTGGCGCAACAGATCAAAATGACCGACGACTATaagatgattgaaa
aattacaagATCGCGTTCGAACGATGGAAAAATCGTTAGAGCAAACGAAA
GGCGAGTACGAGGCTGCACAGGCTGACCTTGAGTCCACGCGCATCGACTT
GGCGACCGAACGACAGAAATGTAAAAGGTTGCAAGAACAAGTGGAAAAGG
ACGTCGCGATCGGTGAAGAGAAAATGCGCGCGGAAATGTTGAGTAAGAAA
CAAG
Run BLAST on NCBI

transcript from alignment at scaffold_165:203193..206870-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049709 ID=TCONS_00049709|Name=TCONS_00049709|organism=Clytia hemisphaerica|type=transcript|length=3678bp|location=Sequence derived from alignment at scaffold_165:203193..206870- (Clytia hemisphaerica)
CAGGTGAAAACAAATTAACAGAGTTAGCTCGTATGGTTGTTCTTGACGGG
CAAAATGAGGTATAAAGTGTAATTTGATTTGAAATTTCAGCCCCTTCTAA
ATGGGTGGCATTTCTGAAACTTCAAAAGACTTTTTGGTCTCTTTTTGGAA
AAGTTTGAAGTGTAATTGAATGTTTTAGAATTCTTTCGAATTTATTTTCC
ATCCTTTACAATCTGAAAGAACATATTAACAAAATTACTTAGCTTTCAAC
AGTTTCAACAAATTCTTTTTCAGTAATCCGATTTCCCAAAGTTTGTAGGA
GGTGATGGAAAGATGGTTCCTATCTCCACTTTAAACTACCACTTCACTTC
TTCTATTTTATTTTATCTTTCAGCTCAGCCAAATCGATATTTGCTCTGAA
TGCTATATTCGCTCTAACGACAGAATGAAGAATTGGTTTTCGATCCCATG
TGTGAGTATCATTGTAATTTTTTGCTTTTCTGACCTCGTTCCTGAAGTTG
CTATTAAAAATCGTGGAACCTTTCGTAATTTTTTCATGTTTTTTTAGGCT
TCTTTGCTTTTGGGGCCTACCTAAGGAGGTCCTATAAATTGACCGTTAAT
GTTAATGTTTATATTCTTTCTCAAGTCGAAAAATATGTACAAATCTGTAC
TATCTTTAAAGCTAATAGAGTTCAACCGTTGTGTGTCCGTTTGTTCGTTC
ATTTGTTCTTTATGAGAACTTTTCAACATTAGCCCGTTATAAATTTTCAT
TTGCATTCTTTCTTCAAACCTTCATAGTGCGACCTCGTTATATTAACGTA
AAAGTCTTGTCTATCAAGGTTTAACGGTAGGTTCACACTTTCATCACGAC
TAATGTTTTATTTAAAACATCTATTGTTTCGTTAACTTTCTAGATACCAG
AACACAGAATCGTATATGCAAAACTTGGAACAGATCCACCTTGGCCGGCC
AAGGTATTTCACTACTGAATTCATAAATTGTTCATCTCTGACTTTTTGAA
ATAAAGTAAATTTTGACGCTTCTAAAGCCGCTATCTAATTCGAAATATAT
CAAAAGTAATACGCAATTGAAAATTTACTGCCAGCTAATTTGAAATATAT
TAGATGATTTATATTCTTCTCGTAGTAGTGTGCGTGATCTAATTTTTGTC
AAAACCAGGGTTTTTAGACAATGGCCACCACCCTTTTTTTAACCTATGTA
CTTGACTACCATTATACTGTTTGTTACTGGACTTGGTTTGCCGTCACCCG
ACTGACTAACTGAATCTCGAAATTGTCGACCCAAAAAGATTTATTGCCAT
TTTAAAGAAGAATTTACCAGATTTGATGACCCTTTGAGGGGCTTCGTATC
ATTTGATATTGTAACTTGATATCAGATTTTTTATTGTAATAAATTCTGTG
CAGGTGTTACGTGAAAACGAAGACGGTTCCAGCATTGACGTTCGATTCTT
TGGAAATCCATATCAAAGGTATTGAGCACACGTTTACTTAGATCTCATCT
GTTCAAATTATTTAACCAAAGTTTTTTTTTTCATCTGCTTGCTAAATATA
ATCTTCGCTGTAAAAGCATGTCCTGTTGGAATCTTTATGCCCTAGAAATC
CTTAAAAAATCGAAAGTTTCGAACCATCTATCAGGCCATCCTAGAAAAGC
ATGGTAGTGTTTTTCAACTAAAAAGACTGATTTTACCAGCATTTTTAGTG
ATTACTGGAGGGTTAGCGTCTAGGGCATATGAAAAAAAAGCCTGTCTTTA
GTGGGCTGCACTGATATCTAAAGGAAGTAAATTAGTCCTGTTTGTTAATC
CGTACGAATTAAAGGAATGATGGTCTAATTAACTTTCTAATTAACACAGA
GCATGGATACCGAATCGAAAACAAAACATCTGGGATCTCGACGAAAAACC
ACAACCGAAGAAACGTTCTAAAGCTCTCTCGCTTGCCGAAGAAGAACTCA
AAGTCTACTTACGTCTATTAGCCAGGAGCAAGTCCTCTGCTAAGGTATAT
TGATCACGTATAGGCTATTTCACGGTCGAAATGGATCATGGGTAATCAGG
ACCACCGCGCTCCGATAGCTACTTTCTGTTGGTCTAATTTTTTGGATGTT
TTTGCGTCTAGCCAGCGGGAAACCGTTATTGAGGCGCAACCGGTCCTGGT
CACAGATGATTCATTTCAACTGTGAGATGGCCTATTCATAAACATTCATC
ATCCAATTCCAATCATACGGCTGTAACCTAAANATCACACATGATTCATT
TCAACTGTAGTGAGATGGCCTATTCTTAAATATTCATCATCCAATTCCAA
TCAAACGTCTGTAACCTAAAAAAAAAAACAGGGAAAATATAAAGAAATGA
AAATTTTGCTTTTGAAGGATTGACTTCGACATCAGTCTTTGCATTCCCGA
CACAAAAAAATCTTTCTCCTACTTTTTATGATTTTTCCTTCTTTTCAAGT
ATTCTTCAAACATCTCCTGTGCTTTAATATCTTTGATGAGTTATTACAGA
TTATACTCTAAAATGAGACATAAAATTGACTATCTAGTTAGTCTTGGATT
AAAAGATATCCAAATGCTCTAATTAGCATATTTCCATGGTGGGCAAAAGC
TGTTTATATGGAGGTGGTCTGGCCCAGCTAGGTGAGGTGGGATGGATTTT
CGAACGTTTCGTCACAGTTTTTGACGAATCAAATGGCTAGAAATAGATTA
TGTGGCGTTCGAAAATCTATCCCACCTCACCTAACCTCCATATGAACAGT
CCCTTAGAAGAATATAAATCAAATCAACGGAGATACTGTTTAATACATTC
TGATCAATCGTATTTACTTTCCTTTCTAAAGAGCGGTAAAGTAACATCCT
CGGATTCATCTGAAGAAGAAGAAATCGACGACTCAGACGACCAACAACCT
GAAAAAGAAACTAAATCATCTTTCACCAAGGTCAAAACACCCGCCAAGAA
AGCCGCAACACCCTCTTCTGCTTCCAAATCTTCGTCTCGGGGTCGAAAAC
GAACGCCCGCTGCCTCCAAGCCGCAGACTGAATCTGACGAAGACGAAGAA
GAAGAAGAATTGGCGGACGAAAGCAAAAGCGAAAGCGAAAGTGAAAGTGA
CAGCGATGGAGAATTCCAACCGCCACAGAAACGTAACAAAAAGAAAGACA
CCAAACGAAAATCGCGCGACGACTCGCAGTGTAAGAAACAACGTGGCCGA
AAGCGAGGAAGTGGCGTGAAACGAAAAACAACGTCGCCCGACGGAGCATC
CTCCTCGTCTGCCAAAGAAACGAAAGCCGAGCGACGTTTCCGCGAGATGC
AAGAAAAGAAAATGATGGAATTTCAAAAAAACAAAGGTAGCAAAAACTAT
AATAAAAACGAACAGAAAGTTGATATTAATAAAAACATTGGTAGTGAAGA
CGGTGGTGATGATTCTTCTGAGATGCAGTTGGCGCAACAGATCAAAATGA
CCGACGACTATAAGATGATTGAAAAATTACAAGATCGCGTTCGAACGATG
GAAAAATCGTTAGAGCAAACGAAAGGCGAGTACGAGGCTGCACAGGCTGA
CCTTGAGTCCACGCGCATCGACTTGGCGACCGAACGACAGAAATGTAAAA
GGTTGCAAGAACAAGTGGAAAAGGACGTCGCGATCGGTGAAGAGAAAATG
CGCGCGGAAATGTTGAGTAAGAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031518XLOC_031518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049709-exon-scaffold_165-1575043694:206812..206870TCONS_00049709-exon-scaffold_165-1575043694:206812..206870Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1575043694:206420..206497TCONS_00049709-exon-scaffold_165-1575043694:206420..206497Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1575043694:205918..205977TCONS_00049709-exon-scaffold_165-1575043694:205918..205977Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1575043694:205403..205467TCONS_00049709-exon-scaffold_165-1575043694:205403..205467Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1575043694:204877..205021TCONS_00049709-exon-scaffold_165-1575043694:204877..205021Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1575043694:203193..204039TCONS_00049709-exon-scaffold_165-1575043694:203193..204039Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1510915933:206812..206870TCONS_00049709-exon-scaffold_165-1510915933:206812..206870Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1510915933:206420..206497TCONS_00049709-exon-scaffold_165-1510915933:206420..206497Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1510915933:205918..205977TCONS_00049709-exon-scaffold_165-1510915933:205918..205977Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1510915933:205403..205467TCONS_00049709-exon-scaffold_165-1510915933:205403..205467Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1510915933:204877..205021TCONS_00049709-exon-scaffold_165-1510915933:204877..205021Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1510915933:203193..204039TCONS_00049709-exon-scaffold_165-1510915933:203193..204039Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1491911889:206812..206870TCONS_00049709-exon-scaffold_165-1491911889:206812..206870Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1491911889:206420..206497TCONS_00049709-exon-scaffold_165-1491911889:206420..206497Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1491911889:205918..205977TCONS_00049709-exon-scaffold_165-1491911889:205918..205977Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1491911889:205403..205467TCONS_00049709-exon-scaffold_165-1491911889:205403..205467Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1491911889:204877..205021TCONS_00049709-exon-scaffold_165-1491911889:204877..205021Clytia hemisphaericaexon
TCONS_00049709-exon-scaffold_165-1491911889:203193..204039TCONS_00049709-exon-scaffold_165-1491911889:203193..204039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:203193..206870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11648e-08	0	0.00203237	0.648146	15.8077	12.8599	5.98056	8.63642	4.93473	3.37396	0	2.68254	6.71474	3.55491	0.677522	3.40759	2.05104	3.29442	2.06604e-07	1.87044	1.52049	4.38205	0.026167	4.51391	3.09296	6.31836	0.624283	0.956975	0.444577	1.48547
Blast
[Close]
BLAST of TCONS_00049709 vs. Swiss-Prot (Human)
Match: ZMY11 (Zinc finger MYND domain-containing protein 11 OS=Homo sapiens GN=ZMYND11 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.508e-22
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 3 
Query:   18 TELARMVVLDGQNELSQIDICSECYIRSNDRMKNWFSIPCIPEHRIVYAKLGTDPPWPAKVLRENEDGSSIDVRFFGNPYQRAWIPNRKQNIWDLDEKPQ--PKKRSKALSLAEEELKVYLRLL 383
             ++ARM+  D  +EL ++ +C  C+  SN R  NWF  PCIP H +V+AK+     WPAKV+++ ++   +DVRFFG+ +QRAWIP+  +NI D+         KRS     A +EL+++ R L
Sbjct:  238 ADIARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQKEDN--QVDVRFFGHHHQRAWIPS--ENIQDITVNIHRLHVKRSMGWKKACDELELHQRFL 357
The following BLAST results are available for this feature:
BLAST of TCONS_00049709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZMY111.508e-2240.32Zinc finger MYND domain-containing protein 11 OS=H... [more]
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