TCONS_00049710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049710
Unique NameTCONS_00049710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049710 ID=TCONS_00049710|Name=TCONS_00049710|organism=Clytia hemisphaerica|type=transcript|length=1186bp
CCCAGGTTTTAAAGTACAAACCTTGGTTTATGGGGGCGTAAACCTAGGTT
TGCGATATTTTTGTGCATTTGGGCTTCCAAAAAGTAAAGTACCCTCTCAC
CAAAacaaaaccgggatttttcattccgtttgGTGGTGGACTTATACTTT
GACTACTGGCATAGTAAAAAATAACAGAGAAACATCTATTCTGGTTTTAA
ATGAACTATGGGATATGTTCTGCAGATGACGCCGTAATGCTGATGAGAGT
CGAATAGACGAGAAACAGAAAAAAAGGATTTCCGCTGTGGTTACGCCAGG
CCAGGCAAATCACCGGATAGACTTCTACCCGGAAGAAGTTCAGGCGCTAA
ATACTTCGAATTTTCCTAGCATATCGAATAAGCCTCGTTTCCATGTGgaa
ttttaaaatcataaaCAACAGAGCAGAAAAAAGGCACAAAAAAGCAGCAG
AGTTTTGGGtaaaattttaggaaaatggagTTTTCTTGACCCGAATACAG
AACATATATTCTCAACTCTGAATGGTTTATGGTTGAACTTCTAATGTTGC
TACTATGGCAGAGTCTGAAGTGAGAAGAACTTCTGATCCTCGAGTTGTGA
GGAAGATTCATTCTGCAATCAAAAAAACATGTGAGCAAAAACAATGTCCA
ATCATGGAAAGGATTCAAAGAGCCTTGGCCATTGATAAAGTACAAATCAC
ACGTTCACGAATAGAGCTTCAACTGAAAAATGCAATCAAAGATGGACTGA
TCATTGAAAGCAGTGGTAAATCAGGCAAAACTACTTCCATTTCTGAATCA
AAATCTTCATCATTTCGGGTGCCAACTCAAGAAAACTTTTATGAGAATTA
TGAAGATGATGGTCACGACTGGTATTGCTGGGTATGTCATCGAGAAGGTG
AAGTTTATTTGTGTTCGCGTTGCCCTCGTGTGATACATCGGAAATGTGCT
GAACTGACACAAGAAGACTTGGAAGGTGACTTTGTCTGCTATTGTTGTAA
TGATTTGGAATCTACAAAGCAATAtggtaaaaaagaaattcaagaacTGG
CCACCATGTTATCTTATACTATTGACCGAATGAAAAGCAAGTGTGAGGAG
CTATGGAAAAGTCCAGACGAAGAACTTCATCCAACTTACAGGCTTTTTGT
TTACCAGGACACAAGTCTCAATGAACTTGAAAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00049710-protein

>TCONS_00049710-protein ID=TCONS_00049710-protein|Name=TCONS_00049710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MAESEVRRTSDPRVVRKIHSAIKKTCEQKQCPIMERIQRALAIDKVQITR
SRIELQLKNAIKDGLIIESSGKSGKTTSISESKSSSFRVPTQENFYENYE
DDGHDWYCWVCHREGEVYLCSRCPRVIHRKCAELTQEDLEGDFVCYCCND
LESTKQYGKKEIQELATMLSYTIDRMKSKCEELWKSPDEELHPTYRLFVY
QDTSLNELEK
Run BLAST on NCBI

transcript from alignment at scaffold_165:207762..218421-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049710 ID=TCONS_00049710|Name=TCONS_00049710|organism=Clytia hemisphaerica|type=transcript|length=10660bp|location=Sequence derived from alignment at scaffold_165:207762..218421- (Clytia hemisphaerica)
CCCAGGTTTTAAAGTACAAACCTTGGTTTATGGGGGCGTAAACCTAGGTT
TGCGATATTTTTGTGCATTTGGGCTTCCAAAAAGTAAAGTACCCTCTCAC
CAAAACAAAACCGGGATTTTTCATTCCGTTTGGTGGTGGACTTATACTTT
GACTACTGGCATAGTAAAAAATAACAGAGAAACATCTATTCTGGTTTTAA
ATGAACTATGGGATATGTTCTGCAGATGACGCCGTAATGCTGATGAGAGT
CGAATAGACGAGAAACAGAAAAAAAGGATTTCCGCTGTGGTTACGCCAGG
CCAGGCAAATCACCGGATAGACTTCTACCCGGAAGAAGTTCAGGCGCTAA
ATACTTCGAATTTTCCTAGCATATCGAATAAGCCTCGTTTCCATGTGGAA
TTTTAAAATCATAAACAACAGAGCAGAAAAAAGGCACAAAAAAGCAGCAG
AGTTTTGGGTAAAATTTTAGGAAAATGGAGTTTTCTTGACCCGAATACAG
AACATATATTCTCAACTCTGAATGGTTTATGGTTGAACTTCTAATGTTGC
TACTATGGCAGAGTCTGAAGTGAGAAGAACTTCTGATCCTCGAGTTGTGA
GGAAGATTCATTCTGCAATCAAAAAAACATGTGAGCAAAAACAATGTCCA
ATCATGGAAAGGATTCAAAGAGCCTTGGCCATTGATAAAGTACAAATCAC
ACGTTCACGAATAGAGCTTCAACTGAAAAATGCAATCAAAGATGGACTGA
TCATTGAAAGCAGTGGTAAATCAGGCAAAACTACTTCCATTTCTGAATCA
AAATCTTCATCATTTCGGGTGCCAACTCAAGAAAACTTTTATGAGGTATG
AAGTTTTTTTTAACATTTAGATTTAGATTTAGAATAAAGTGTTCATTTGG
TAAAGTTTATTCTGCTTAATGCTAACAAGTTTATCTTTCATATTGATTTG
ATTACGCAGTGTTAAAGGGATAATCAGATGGTCTCTGAGATATTTTGCCT
GTAGATAGCTTCTAGGATTTTAGGAAAAACCTCTAAATTTTTCGGTGTAC
TTATTTTCCTAACTCAAGTTATGCCAATTTGAAATCTCAGAAAATGGGAC
TTTTCAGGGACTTTTCACATTTTTTTCTATTGTCAGTGTAGCTGGAACCT
CGATATTCCAGGATTAGAAAAAGCTATACCTGTTATCTTTTTTCTTTAAA
GAATCAACAAGCCATCAACATCGATANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTCAAGCAAAGGTTCAAAATTTCAAATT
GGCATAACTTGAGTTAGGAAAATAAGTACACCGAAAAATTTAGAGGTTTT
TCCTAAAATCCTAGAAGCTATCTGGAGGCAAAATATCACAGACCATCTGA
TTATCCCTTCAAGCAAGGCTAATTTTGTAGTTTTTCAACAATTGAAAATG
AATCCAGACCCAATCAATCAAACTTGTTGAACCATTCAAACAATCATACT
CCATCAAACTATTAAACATGAAGATTTTTCTTTAAATTGTGAGTGTTTGA
TTAGGCCGATGAAATTTATATATGAGTTTACCGTCGGCCGCCCGCATCTC
TAAAAAGCACCCGCATGAAAATTTCATTATTTTCAAAATTCATAAATTTT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
TGCTGCCGCCCTCAATCCTACAACTGCAGTGGGCGTCCCGCCCATATATC
TGCCAAACCGCCCTGACCGCCATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTGCTGTTGGGA
AAATAATGAATAATGAAATCATGCCGCATCTATTTTTGGGTAAGTTCACG
ACGGTAAACTCATATGTAAATTTCATCGGCCTTAAGTACGATCAACTGTT
TGGCGGTTCGATAGACCTTTTCGCCACATTCGGCCAGACCCGATCAATCG
AACTTGTCGAACCAATCGAACAGTCGAACTAATCAAACTCCATCGAACGA
TTAAAGTTCGATTAAAAAAATTAATCGAACCTAATCGAACACTCACAATT
TTTGAAGCAATAGCAGTTCGTCAGGAAAAAGTTCGATTAGTTCGATGATA
TAGACCTTTTTTCAAGAGGCCATCCTGTTGAATAATTATGTCGTCCAGCA
GAAAAACAATGATAAAACCATGCATAATTATTACAATATGCATGATACAG
ACATAATTATTCAACAGGACGTCCTCTTTGAAAAAAGGTCTATCAAATCC
TCGTATTCTTCCCTCGTTTGCAAAGACTTTGTCCTGGCACGCGATTGCCA
TTTCGACAGTTCCCGGACTTAACAGCTTGACGTTTATTGTACCCGGATAT
TTGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAGTCTGTAGCCGCTCTGT
TGCGATTTCGCGGGCGGTCGAGTGGCGGAATACTACGCCCCAACAAACCG
CCTCTGGCGCTAAAAGGATACAGGAAAGGTGTGTAATCCATTATCGGAAG
TAATTTCCCGACTTTTATTCCGAATTTGGCTTTGAAAAGAAGCTAATATA
CGGTGGCGGAGCAGCACAAACTTGTCGAACAAAATTGGTTTATTGAACTA
ATCGAACCGAAACCCATTGATCGAACTTAATCGAACACTCACAATCTTTT
AAAAAATCTTAGAGTTCGATTAATTGTTTTAATCGAACTTTTGTTCAATG
GAGTTCAATTAGTTTGATTGTTCGATTGGTTCGACAAGTTTGATTGATCG
GGTCTGGATTCGGCTAAAGCTTCAGATGCATCCGGCTGGACTTTCAAGTT
GAATAGTGACCAAAGGGGGTCTCGAACCGGGAACCTATAGGTTTCGAAAC
CAATGCCCTATCCGCTAGGCCAAGCCGGCTGCTGAAAATTCGTTATTTGG
GGTTACTTACACGAAGGTCTCAGTACTATATATAAATAAGTCTGACTGAC
GAGTTAGGCTAACTGTTATGATCGCCATTACTCCGAAGAAGCCACCACAC
GTGTGCACCGCCAACCGGGTAGAGGAACGAAAAAGCCGTGGTTAGATTTA
GTTGGAAAATATGCAAAACATATGCAAGTCTACACAAAGATTAAAAAGAC
AACAAAGCATCTTCCAGACCATGTCAATCGAACGAATCAAATGCTGAATC
AATTGACACGTGCGTTTGGTTTGGGAACGCGAAACACGAACGCGAACTAC
CCATGTCTATACTTTTCAATATATCTCCAGAACTAACAGATTTTTTGAAA
TTCTGTAAAAAGGTCTAAGTTCCTGAATAGTTTTACTATGTTCTGTTAAA
AAATCATAACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCCCCCCCCTGATATGAGCAAGGGAACAATGTTGGCCACCCCTACT
GAAAATTTCAGATCAAAACAAACAAGGAATTAATTCCTGTAACTCGAAGA
AAATTGGAAAAAGCTGGTTTTTGACTGTTTCTGATCCTAAAGTGCTATTT
TTCGGTAAAAGCTACAGCAATTTATGTTTGGATTTCTAGAAAGCTTACCC
ATTCATTGTCATTACATTTTTTATTTGAAAGAGTAATCTCTTCATAGAAT
AAAAATATATCTTCAAATCTTGTAGGGTCATTTTTCAAAAAAATTTTGCC
AAATTCGATTCTCGCATTTCGCCATTTTACCCTAAGCAAAGGCACGTGTT
GAACGCAATTAAATACATTCAAATAATTGCAATTCCATTGTCGAACGTAA
TCGAGTCGCAATCGAATATTACCCAGAATATTACGTTCGATTGAATTCAA
TTATGTCAAATTGACGTTATGAGGGGGTGGGGGGTTTTCAAAAGCTAGTT
TTGACGTTGTTAGAGATCAAAGGTATACCTTTTTGTGAAAATCGCAAATA
TTTGTTTACCGTGAGAGGTCCTAAATCTGACACCACTGCCTAAATCCGAT
GGGGTCTTTCAAAGATACAAACTAAAATAAAAACAAATCTTTCGCTGTGA
CGCAACGAAGATACCAAAGTGTCAACTAAACTGAGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTGA
TACACTGAACCAATTGAACCAAATAACAATAATTGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATTGCAATATGCACAACGTCATAAATGAC
AACAGCAGTAACAGCATCATAAAAAGTAATGAGATGTTTTGATTTTCCAA
AGCACATGAAAATATAAAAGAGGTCTGTGTACGAGCGTGCTCATTTTGAA
ACGTTACGTAATCAAGGCCAAGATCAAGCCTGGTTTTTATTACTCTACAC
TGGCACTTGGCTTGATTGCAGGCCTTCCGTAAATAAACATCTGGACTTAT
GGGTGGTAAAGAGGGCGTTGATAGTTGCCGCCTCATTGATTCGATGTTTG
TTATTCAAATTAAGTGCTACCATCCGCCCTTTATTCAACTTCGCGCAATT
TTTGCAGTTTAGTCTGTTTGTTTCTTGATGGAAACCAGCCCAAGTTGTTT
CGTATTTTTCCCGCACAAGTCACTTTTATTACAAAACTGTTATCGTTTTA
TACATGAGCAACTGATCCAGAATAAAAGGTAATTATTTTTACAACTCACA
CTTTTTAATTACATTAATTGACATCTTGACATTACAGCTATCTTGTTAGA
TGTTTTGTTTCGAGAGTTCTAGCAATAGTTTATCGTTCAACTTGGAGAGG
GAATGTTTGTAAACATAGAATTTTTTTTCATAACAGTTATTGGGGGGGTC
GGAATTAGGCAGTGGTGTCGGATTTAGGACCTCTCACGGTAACTACACTA
TACTTTTTAAGCTGTCGAAAATACATTCGTGTATGAATTACATGAAAATT
TGCTGCTCGCATAATCCCATTGGTTCGCGCTATGATGTCATTACACCAGA
CGTAATTAATCGAACCAATCGAACGGTATTTTTAATCAAACTTTGTCGAA
CTTAATCGAACTTTGTTGGCCAATTTTAATGCTCGACTAAGTTTTGGTTG
TCGAACTTTAATCGAATACTCACAAATTTATCAAAATACAAAGTTCGATT
TTAAGTTTGATTACTGAAATCGAACTTAATCGAACTTTGTCAAGTTTAAT
GGAACAAAAATTTGAGAAAACCCAAGCAACTGAAGGCTCTGCCAATCATT
GTATATTAACTTCTTTTCAAAGCCAAAATGGGGTCATTCAAAAGATCCAT
AATTGATCCATAATTTGAAAATGCGACAGTCTTCTAAAGCCAATTATGAG
GGGCAAATTTCAAAATTTTAAGGGTTAATAGGTGTATAATGATGTAACAA
AAAGGTTTCTGAAAGTTTGTATGATAAAAAACCAAGGCAAGAGAAATGAT
GAATTTATTATGAAACATTGATTACATGGTACTAAGAAATGGAATATTGC
ACTGGGAAGATTCCTTAGGTACAACAAAGAACTATTTAAGGGGTCACTCA
CATATCGATTCTTCCCACGACTAACGTCAAATTTACGCGAAGGGGTGGGG
TTNTCTTTTAAAGCCAATTATGAGGGGCAAATTTCAAAATTTTAAGGGTT
AATAGGTGTATAATGATGTAACAAAAAGGTTTCTGAAAGTTTGTATGATA
AAAAACCAAGGCAAGAGAAATGATGAATTTATTATGAAACATTGATTGTC
CATGGTACTAAGAAATGGAATATTGCACTGGAAAGATTCCTTAGGTACAA
CAAAGAACTATTTAAGGGGTCACTCACATATCGATTCTTCCCACGACTAA
CGTCAAATTTACGCGAAGGGGTGGGGGTTAGAGTCAGTGACGCTTAGAAA
TTTCACCATAAGTATTGATTTTTGAGACACTTTTTTCCGTGACAAATGTT
ACTTTCCATTTTCTTTTCCTCATTTTATATATTTCAAGTATTCGCTCACT
TCGCTATTTTATAGAACAATTTTAACCAAAACAAACGGCCTGATGTTTAT
GTCTCGTGTTCCTTTTGTTTAGACGGTCTGCACGGCCCGTAAATTTTAGT
CGACGGTCGGTCTTTTTTTGTGAAATAACGCTATTCTGTTGATTATGATT
ACAGAGATATAATTAATTCCGGCAACTTTTCAAATTAGCATCAATTTGAC
GTTAGTCATGGGTAGAATCGATATGTGAGTGACCCCTAACTCATTAAAAA
CTCATTTCTTGTATTATTTGTTCATCCCCTGCAAGTCAATAAGTGATATC
ACCAGGGATTTTTCTTGTATTATTGGGGCAGTCCTGTTGAATCTACTGCC
TTTTCCTCATAGAATTATGAAGATGATGGTCACGACTGGTATTGCTGGGT
ATGTCATCGAGAAGGTGAAGTTTATTTGTGTTCGCGTTGCCCTCGTGTGA
TACATCGGAAATGTGCTGAACTGACACAAGAAGACTTGGAAGGTGACTTT
GTCTGCTATTGTTGTAATGTAAGTATGTTGTCTTTTTTTCTATTTGAAAA
TTTTATGTGAAATAGACTTTGGCAGCTTGAAAGTGATATGTTTTATTAAC
CCTGAGAAGAACAATATTAATAATCTGGGGGGACATCCAAAACGTGTCAC
AAAATCTTCAAAAATGATTGAAAAGTCATGAAAATTGTCTGGATTATTAA
AGGCGCTTTAATTTTTAGATTATTTTAGCTATTACCCATTTTTAGTGCTG
GCGTCATTGAATGTGGAATTAAAAAAGTTTAGAGTAAAAGTTAAAGTAAG
GACAGCCTCTAACAAAGCCTCTCTGAAAAAAAATCCTCCATTTAGAAGGG
ATAATTTGTTACCATGATTGATAGGATTACGTGCTTTTGCTGCATTGAAT
TACTTTTTTCTCAATGTGCGCTCCCTCAAATCTAAAAGCATGCATAGAAT
AATTTCTTTGATAATGGTGTAATATGATATTGCTCACCAACAGCTGACCA
ATAGCTTAATTTTTTAAACTAACTGGATATCCTATATATTGACCCTTGTT
CGTCAGCACGTTTGTCTGTTAATTTGTTCGTTACCAGTTTTTGTTGGCAT
CAGACCATGGGAATATTCTGAATTTTGGCACCTTTACAAATGATAGTGCC
TAAAATGTGACAGAGCCCAATTTTAAAAGAAAAAATCGGTCGCCAGATTG
GGAAAAATGCCACAAAAAGGATGGTTTTAGGAATTTTTTAATTATGATTT
GTTTTGTTTGCAGGATTTGGAATCTACAAAGCAATATGGTAAAAAAGAAA
TTCAAGAACTGGCCACCATGTTATCTTATACTATTGACCGAATGAAAAGC
AAGGTAATGCTCCTGGAAGACGATTTAGAATCTTCTAAATACTCTTTTAT
TTTGTTACCTAAGTGGATTAAATTTCGCATGGAATCGCAAAAATTAATAC
TCGCGAAAGATTTAAAATCTCGATTCCTGTGTCCTCCATAATAGCGAGTT
TATGTATGTGTGTTTTTCAGCGACGGAGACGGTAAGGTTCTAATTTGACA
AGATCCTGACCAGCTGAGGACGACGGTAAATCAGCACTTTTACCGTCCTC
GATTTTGCGGGGCGGAATTGCGGGTTTTTCCAAATCGTTTCAGTCACTTT
ACCGTCCTCAAAAGTGCAAATACATAAACTCGGTAATGATTGATTTCAGC
GTTGTGAATGGTTTACCAAGTTTCTTCTTTGAATCTAGTGACCACAAACA
CAACAGCATGCATTCTCAAGTGAGTTACAGCATGTCCAAGGTAAAAGTGA
ACCAGTTTCCACTCACTTTCAAAATGTCAAACATAGCTGGAAAGAAGCGC
CATATGATGTAGATCAACGTGATGGGTGAAAAAATTTAATTTGAGGCTAT
AAGAAGTTATAGCCCAAAAACCTGTATTATGACGTCATAAACATTACGTA
ACATTACGTCAAGAAACTTAAAATTTTACTCAAGTGAGTTACAGTTGTGG
TGCACAATGAATCTACACTCCTCGGTTCGTCCACTTAATAGATAGGCGAG
CTGTCCGGTTGTGGACCCCGTGAAAAATAATGATAAATAGCCACATTAAC
AAGAAAATTTGAACTAAACTTCCATCCACTGATTTCATGGAATAAATGCT
TAAGTAGATTACCCCTTTAAAAACAGCTAGGTTTGAGCTCTTGAGTTAAT
TCCATTGTGTTTTAGTGTGAGGAGCTATGGAAAAGTCCAGACGAAGAACT
TCATCCAACTTACAGGCTTTTTGTTTACCAGGACACAAGTCTCAATGAAC
TTGAAAAGGT

Coding sequence (CDS) from alignment at scaffold_165:207762..218421-

>TCONS_00049710 ID=TCONS_00049710|Name=TCONS_00049710|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_165:207762..218421- (Clytia hemisphaerica)
TGTGAGGAGCTATGGAAAAGTCCAGACGAAGAACTTCATCCAACTTACAG
GCTTTTTGTTTACCAGGACACAAGTCTCAATGAACTTGAAAAGGATTTGG
AATCTACAAAGCAATATGGTAAAAAAGAAATTCAAGAACTGGCCACCATG
TTATCTTATACTATTGACCGAATGAAAAGCAAGAATTATGAAGATGATGG
TCACGACTGGTATTGCTGGGTATGTCATCGAGAAGGTGAAGTTTATTTGT
GTTCGCGTTGCCCTCGTGTGATACATCGGAAATGTGCTGAACTGACACAA
GAAGACTTGGAAGGTGACTTTGTCTGCTATTGTTGTAATATGGCAGAGTC
TGAAGTGAGAAGAACTTCTGATCCTCGAGTTGTGAGGAAGATTCATTCTG
CAATCAAAAAAACATGTGAGCAAAAACAATGTCCAATCATGGAAAGGATT
CAAAGAGCCTTGGCCATTGATAAAGTACAAATCACACGTTCACGAATAGA
GCTTCAACTGAAAAATGCAATCAAAGATGGACTGATCATTGAAAGCAGTG
GTAAATCAGGCAAAACTACTTCCATTTCTGAATCAAAATCTTCATCATTT
CGGGTGCCAACTCAAGAAAACTTTTATGAGTGTGAGGAGCTATGGAAAAG
TCCAGACGAAGAACTTCATCCAACTTACAGGCTTTTTGTTTACCAGGACA
CAAGTCTCAATGAACTTGAAAAGGATTTGGAATCTACAAAGCAATATGGT
AAAAAAGAAATTCAAGAACTGGCCACCATGTTATCTTATACTATTGACCG
AATGAAAAGCAAGAATTATGAAGATGATGGTCACGACTGGTATTGCTGGG
TATGTCATCGAGAAGGTGAAGTTTATTTGTGTTCGCGTTGCCCTCGTGTG
ATACATCGGAAATGTGCTGAACTGACACAAGAAGACTTGGAAGGTGACTT
TGTCTGCTATTGTTGTAATATGGCAGAGTCTGAAGTGAGAAGAACTTCTG
ATCCTCGAGTTGTGAGGAAGATTCATTCTGCAATCAAAAAAACATGTGAG
CAAAAACAATGTCCAATCATGGAAAGGATTCAAAGAGCCTTGGCCATTGA
TAAAGTACAAATCACACGTTCACGAATAGAGCTTCAACTGAAAAATGCAA
TCAAAGATGGACTGATCATTGAAAGCAGTGGTAAATCAGGCAAAACTACT
TCCATTTCTGAATCAAAATCTTCATCATTTCGGGTGCCAACTCAAGAAAA
CTTTTATGAGTGTGAGGAGCTATGGAAAAGTCCAGACGAAGAACTTCATC
CAACTTACAGGCTTTTTGTTTACCAGGACACAAGTCTCAATGAACTTGAA
AAGGATTTGGAATCTACAAAGCAATATGGTAAAAAAGAAATTCAAGAACT
GGCCACCATGTTATCTTATACTATTGACCGAATGAAAAGCAAGAATTATG
AAGATGATGGTCACGACTGGTATTGCTGGGTATGTCATCGAGAAGGTGAA
GTTTATTTGTGTTCGCGTTGCCCTCGTGTGATACATCGGAAATGTGCTGA
ACTGACACAAGAAGACTTGGAAGGTGACTTTGTCTGCTATTGTTGTAATA
TGGCAGAGTCTGAAGTGAGAAGAACTTCTGATCCTCGAGTTGTGAGGAAG
ATTCATTCTGCAATCAAAAAAACATGTGAGCAAAAACAATGTCCAATCAT
GGAAAGGATTCAAAGAGCCTTGGCCATTGATAAAGTACAAATCACACGTT
CACGAATAGAGCTTCAACTGAAAAATGCAATCAAAGATGGACTGATCATT
GAAAGCAGTGGTAAATCAGGCAAAACTACTTCCATTTCTGAATCAAAATC
TTCATCATTTCGGGTGCCAACTCAAGAAAACTTTTATGAGTGTGAGGAGC
TATGGAAAAGTCCAGACGAAGAACTTCATCCAACTTACAGGCTTTTTGTT
TACCAGGACACAAGTCTCAATGAACTTGAAAAGGATTTGGAATCTACAAA
GCAATATGGTAAAAAAGAAATTCAAGAACTGGCCACCATGTTATCTTATA
CTATTGACCGAATGAAAAGCAAGAATTATGAAGATGATGGTCACGACTGG
TATTGCTGGGTATGTCATCGAGAAGGTGAAGTTTATTTGTGTTCGCGTTG
CCCTCGTGTGATACATCGGAAATGTGCTGAACTGACACAAGAAGACTTGG
AAGGTGACTTTGTCTGCTATTGTTGTAATATGGCAGAGTCTGAAGTGAGA
AGAACTTCTGATCCTCGAGTTGTGAGGAAGATTCATTCTGCAATCAAAAA
AACATGTGAGCAAAAACAATGTCCAATCATGGAAAGGATTCAAAGAGCCT
TGGCCATTGATAAAGTACAAATCACACGTTCACGAATAGAGCTTCAACTG
AAAAATGCAATCAAAGATGGACTGATCATTGAAAGCAGTGGTAAATCAGG
CAAAACTACTTCCATTTCTGAATCAAAATCTTCATCATTTCGGGTGCCAA
CTCAAGAAAACTTTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031519XLOC_031519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049710-exon-scaffold_165-1575043694:217577..218421TCONS_00049710-exon-scaffold_165-1575043694:217577..218421Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1575043694:209554..209709TCONS_00049710-exon-scaffold_165-1575043694:209554..209709Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1575043694:208719..208808TCONS_00049710-exon-scaffold_165-1575043694:208719..208808Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1575043694:207762..207856TCONS_00049710-exon-scaffold_165-1575043694:207762..207856Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1510915933:217577..218421TCONS_00049710-exon-scaffold_165-1510915933:217577..218421Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1510915933:209554..209709TCONS_00049710-exon-scaffold_165-1510915933:209554..209709Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1510915933:208719..208808TCONS_00049710-exon-scaffold_165-1510915933:208719..208808Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1510915933:207762..207856TCONS_00049710-exon-scaffold_165-1510915933:207762..207856Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1491911889:217577..218421TCONS_00049710-exon-scaffold_165-1491911889:217577..218421Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1491911889:209554..209709TCONS_00049710-exon-scaffold_165-1491911889:209554..209709Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1491911889:208719..208808TCONS_00049710-exon-scaffold_165-1491911889:208719..208808Clytia hemisphaericaexon
TCONS_00049710-exon-scaffold_165-1491911889:207762..207856TCONS_00049710-exon-scaffold_165-1491911889:207762..207856Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049710-proteinTCONS_00049710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:207762..218421 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.46928	2.58499	1.93242	1.89057	66.0116	51.2345	37.8624	41.4778	21.7874	25.0162	20.7863	19.8069	15.0458	16.804	14.1245	15.7331	20.8812	21.1231	10.1522	13.5319	19.2048	21.3722	8.66023	12.5293	15.79	17.5717	12.1493	10.1497	11.5674	12.3602
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
Blast
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BLAST of TCONS_00049710 vs. Swiss-Prot (Human)
Match: ZMY11 (Zinc finger MYND domain-containing protein 11 OS=Homo sapiens GN=ZMYND11 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.646e-16
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 3 
Query:  555 MAESEVRRTSDPRVVRKIHSAIKKTCEQKQCPIMERI----QRALAIDKVQITRSRIELQLKNAIKDGLIXXXXXXXXXXXXXXXXXXXXFRVPTQENFYENYEDDGHDWYCWVCHREGEVYLCSRCPRVIHRKCA--ELTQEDLEGDFVCYCCNDLESTKQYGKKEIQELATMLSYTIDRMKSKCEELWKSPDEELHPTYRLFVY 1154
            MA    RR +D + ++ + +AI+    QKQ   ++RI     R   +   + TR     QL  A+KDGLI+E+     K +     +   + +P  E    ++E + HDWYC+ CH  GEV +C  C RV H KC   E    D    + C  C  ++  K   K   QE+ T L + + RMK +  +L K   +  HP YR  V+
Sbjct:    1 MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTR-----QLSLAVKDGLIVETLTVGCKGSKAGIEQEG-YWLPGDEI---DWETENHDWYCFECHLPGEVLICDLCFRVYHSKCLSDEFRLRDSSSPWQCPVCRSIKK-KNTNK---QEMGTYLRFIVSRMKERAIDLNKKGKDNKHPMYRRLVH 193
The following BLAST results are available for this feature:
BLAST of TCONS_00049710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZMY112.646e-1631.55Zinc finger MYND domain-containing protein 11 OS=H... [more]
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