TCONS_00049725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049725
Unique NameTCONS_00049725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049725 ID=TCONS_00049725|Name=TCONS_00049725|organism=Clytia hemisphaerica|type=transcript|length=738bp
TAACTCAATCAAATTTGCTTTCCCTGTGCGGGTTCGAGTTATTGAGACTC
CGCTATACGTATTATAACATGATTTCAAAGATAATGAATTggcataattt
ttatttttaaagatatttaacaaattattttattgTAGATTTTTAGAGAA
ACGGCTATTTTATTGTTACTTTTTAGGCTTTAGACATTGGCTCTAACATT
CAATATTCACTCTGGTTACcgtaatgggctcttccagaaaagatttgaat
atgggggatgaaggatataacattttttagaaatttaccccgaacattgt
gaattttgacccgTTGACAACGGATctcacccccggacaagcatcagttg
acgcCCCGGaaattcaaaatcacccctaatcagAGAGCAAGTTTGCCCCT
CTCAAAAGGAATGTTTTAataaccccccccccggacaaatTATCTAATAT
ATCCTCCCCCCTtcccatgtacaaaaatttcctggaagagcccaattcgG
AATTCCTAATAAAGTACCACGccaaattttgttcattttcgaACCAGCAT
TTCGGTTGTCGATGATCTTTTTGAGAAGAATGGAATTCAAAAAAGTGCTT
TCTGGCTTTCTTGCTTTTATTTCAATACAAAAAAATAGCTAGAGTGAATG
tagtaaaaaattaatttttgggacTTTTGTAGAGTTTCTATTATATTATT
TAACTATAGAAGATGAAtgggaaaaaataaagaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_165:222159..222896

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049725 ID=TCONS_00049725|Name=TCONS_00049725|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at scaffold_165:222159..222896 (Clytia hemisphaerica)
ttttttctttattttttcccaTTCATCTTCTATAGTTAAATAATATAATA
GAAACTCTACAAAAgtcccaaaaattaattttttactaCATTCACTCTAG
CTATTTTTTTGTATTGAAATAAAAGCAAGAAAGCCAGAAAGCACTTTTTT
GAATTCCATTCTTCTCAAAAAGATCATCGACAACCGAAATGCTGGTtcga
aaatgaacaaaatttggCGTGGTACTTTATTAGGAATTCcgaattgggct
cttccaggaaatttttgtacatgggaAGGGGGGAGGATATATTAGATAat
ttgtccggggggggggttatTAAAACATTCCTTTTGAGAGGGGCAAACTT
GCTCTctgattaggggtgattttgaatttCCGGGgcgtcaactgatgctt
gtccgggggtgagATCCGTTGTCAAcgggtcaaaattcacaatgttcggg
gtaaatttctaaaaaatgttatatccttcatcccccatattcaaatcttt
tctggaagagcccattacgGTAACCAGAGTGAATATTGAATGTTAGAGCC
AATGTCTAAAGCCTAAAAAGTAACAATAAAATAGCCGTTTCTCTAAAAAT
CTAcaataaaataatttgttaaatatctttaaaaataaaaattatgccAA
TTCATTATCTTTGAAATCATGTTATAATACGTATAGCGGAGTCTCAATAA
CTCGAACCCGCACAGGGAAAGCAAATTTGATTGAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031530XLOC_031530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049725-exon-scaffold_165-1491911889:222159..222896TCONS_00049725-exon-scaffold_165-1491911889:222159..222896Clytia hemisphaericaexon
TCONS_00049725-exon-scaffold_165-1510915933:222159..222896TCONS_00049725-exon-scaffold_165-1510915933:222159..222896Clytia hemisphaericaexon
TCONS_00049725-exon-scaffold_165-1575043694:222159..222896TCONS_00049725-exon-scaffold_165-1575043694:222159..222896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:222159..222896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0670657	0.196199	0.0759352	0.148581	0.180884	0.0714683	25.0048	30.0284	64.088	32.4113	39.341	60.9236	12.2659	9.77372	0.152328	0.367811	0.302076	0.206412	0.427754	0.373011	0.129686	0	0	0	0	0	0	0	0.0744377	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top